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Department of Molecular Biology and Genetics

2017

Publications 2017

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Ebbesen, K. & Kjems, J. (2017). microRNA sponging by a new hearty circRNA. Non-coding RNA Investigation.

Luecke, S., Holleufer, A., Christensen, M. H., Jønsson, K. L., Boni, G. A., Sørensen, L. K. ... Paludan, S. R. (2017). cGAS is activated by DNA in a length-dependent manner. E M B O Reports, 18(10), 1707–1715. https://doi.org/10.15252/embr.201744017

Khatun, M., Jorgensen, H. B. H., Ehsani, A., Lund, M. S., Sahana, G., Sorensen, P. & Rontved, C. M. (2017). Whole blood optimization and genetic association of ex vivo TNF-alpha responsiveness to killed E-coli in Danish Holstein cows. Livestock Science, 201, 92-98. https://doi.org/10.1016/j.livsci.2017.04.014

Tholey, A., Taylor, N. L., Heazlewood, J. L. & Bendixen, E. (2017). We Are Not Alone: The iMOP Initiative and Its Roles in a Biology- and Disease-Driven Human Proteome Project. Journal of Proteome Research, 16(12), 4273-4280. https://doi.org/10.1021/acs.jproteome.7b00408

Engholm, D. H., Goodsell, D., Kilian, M., Andersen, E. S., Pedersen, B. P. & Kjærgaard, R. S. (2017). Visualizing the Bacterium Streptococcus pneumoniae. In L. Philipsen & R. Schmidt Kjærgaard (Eds.), The Aesthetics of Scientific Data Representation: More than Pretty Pictures (1. ed. ed., pp. 1-15). New York: Routledge. https://doi.org/10.4324/9781315563411

Shah, N. (2017). Variant detection and population genetics analysis in Lotus japonicus. Aarhus Universitet, Institut for Molekylærbiologi og genetik.

Mun, T., Malolepszy, A., Sandal, N., Stougaard, J. & Andersen, S. U. (2017). User Guide for the LORE1 Insertion Mutant Resource. In Plant Genomics. Methods in Molecular Biology (Vol. 1610, pp. 13-23). Humana Press. Methods in molecular biology (Clifton, N.J.) https://doi.org/10.1007/978-1-4939-7003-2_2

Davidson, S., McCabe, T. M., Crotta, S., Gad, H. H., Hartmann, R., Hessel, E. M. ... Wack, A. (2017). Unique and Overlapping Actions of Type I and III IFNs in Influenza A Virus Infection and Implications for Therapy. Cytokine, 100, 123-124.

Hagensen, M. K., Mortensen, M. B., Kjolby, M., Stillits, N. L., Steffensen, L. B. & Bentzon, J. F. (2017). Type 1 diabetes increases retention of low-density lipoprotein in the atherosclerosis-prone area of the murine aorta. Atherosclerosis, 263, 7-14. https://doi.org/10.1016/j.atherosclerosis.2017.05.019

Jensen, J. H., Madsen, L. B., Panitz, F., Hornshøj, H., Nielsen, R. O., Bendixen, C. ... Thomsen, B. (2017). Transcriptome dynamics during proliferation and differentiation of porcine primary satellite cells. Gene Reports, 7, 169-175. https://doi.org/10.1016/j.genrep.2017.04.007

Duan, J., Sanggaard, K. W., Schauser, L., Lauridsen, S. E., Enghild, J. J., Schierup, M. H. & Wang, T. (2017). Transcriptome Analysis of the Response of Burmese Python to Digestion. GigaScience, 6(8), 1-51. https://doi.org/10.1093/gigascience/gix057

Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A., Pedersen, C. N. S. & Brodersen, D. E. (2017). Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Research, 45(5), 2875-2886. https://doi.org/10.1093/nar/gkw1266

Lyons, J., Laban, M., Mikkelsen, S., Ulstrup, J., Mogensen, L. S., Montigny, C. ... Nissen, P. (2017). Towards the structure of yeast and mammalian P4-ATPases: Poster at the 15th International Conference on Na,K-ATPase and Related Transport ATPases, Otsu, Japan, 2017.

Yang, C., Vu Quang, H., Husum, D. M. U., Tingskov, S. J. H., Vinding, M. S., Nielsen, T. ... Kjems, J. (2017). Theranostic poly(lactic-co-glycolic acid) nanoparticle for magnetic resonance/infrared fluorescence bimodal imaging and efficient siRNA delivery to macrophages and its evaluation in a kidney injury model. Nanomedicine: Nanotechnology, Biology and Medicine, 13(8), 2451–2462. https://doi.org/10.1016/j.nano.2017.08.007

Okholm, A. H. & Kjems, J. (2017). The utility of DNA nanostructures for drug delivery in vivo. Expert Opinion on Drug Delivery, 14(2), 137-139. https://doi.org/10.1080/17425247.2017.1266335

Clausen, M. V., Hilbers, F. & Poulsen, H. (2017). The structure and function of the Na,K-ATPase isoforms in health and disease. Frontiers in Physiology, 8(JUN), [371]. https://doi.org/10.3389/fphys.2017.00371

Andersen, O. J., Risør, M. W., Poulsen, E. C., Nielsen, N. C., Miao, Y., Enghild, J. J. & Schiøtt, B. (2017). The reactive center loop insertion in α-1-antitrypsin captured by accelerated molecular dynamics simulation. Biochemistry, 56(4), 634-646. https://doi.org/10.1021/acs.biochem.6b00839

Rao, R. S. P., Salvato, F., Thal, B., Eubel, H., Thelen, J. J. & Møller, I. M. (2017). The proteome of higher plant mitochondria. Mitochondrion, 33, 22-37. https://doi.org/10.1016/j.mito.2016.07.002

Li, X., Lund, M. S., Janss, L., Wang, C., Ding, X., Zhang, Q. & Su, G. (2017). The patterns of genomic variances and covariances across genome for milk production traits between Chinese and Nordic Holstein populations. BMC Genetics, 18, [26]. https://doi.org/10.1186/s12863-017-0491-9

Hansen, T. B. & Kjems, J. (2017). The invasion of circRNAs. RNA Biology, 14(8), 973-974. https://doi.org/10.1080/15476286.2017.1360467

Andersen, J. L., Lindberg, S., Langgård, M., Maltas, P. J., Rønn, L. C. B., Bundgaard, C. ... Watson, S. P. (2017). The identification of novel acid isostere based inhibitors of the VPS10P family sorting receptor Sortilin. Bioorganic & Medicinal Chemistry Letters, 27(11), 2629-2633. https://doi.org/10.1016/j.bmcl.2017.02.028

Cai, Z., Petersen, B., Sahana, G., Madsen, L. B., Larsen, K., Thomsen, B. ... Panitz, F. (2017). The first draft reference genome of the American mink (Neovison vison). Scientific Reports, 7(1), [14564]. https://doi.org/10.1038/s41598-017-15169-z

Qu, S., Zhong, Y., Shang, R., Zhang, X., Song, W., Kjems, J. & Li, H. (2017). The emerging landscape of circular RNA in life processes. RNA Biology, 14(8), 992-999. https://doi.org/10.1080/15476286.2016.1220473

Liu, M., Yuan, C., Jensen, J. K., Zhao, B., Jiang, Y., Jiang, L. & Huang, M. (2017). The crystal structure of a multidomain protease inhibitor (HAI-1) reveals the mechanism of its auto-inhibition. Journal of Biological Chemistry, 292(20), 8412-8423. https://doi.org/10.1074/jbc.M117.779256

Barbuskaite, D., Praetorius, J., Christensen, H. L., Rojek, A., Nielsen, H. M., Fuchtbauer, E-M. ... Damkier, H. H. (2017). The choroid plexus sodium-bicarbonate cotransporter NBCe2 regulates cerebrospinal fluid pH. F A S E B Journal, 31.

Schytte, G. N. (2017). The biological relevance of phosphorylations on secreted proteins. Abstract from Nordic-Baltic Network on sustainable milk production from native cattle from a dairy and health perspective, Larkollen, Norway.

Pedersen, G. A., Jensen, H. H., Schelde, A-S. B., Toft, C., Pedersen, H. N., Ulrichsen, M. ... Nejsum, L. N. (2017). The basolateral vesicle sorting machinery and basolateral proteins are recruited to the site of enteropathogenic E. coli microcolony growth at the apical membrane. P L o S One, 12(6), [e0179122]. https://doi.org/10.1371/journal.pone.0179122

Stagsted, L. V. W., Daugaard, I. & Hansen, T. B. (2017). The agotrons: Gene regulators or Argonaute protectors? BioEssays, 39(4). https://doi.org/10.1002/bies.201600239

Hede, M. S. & Knudsen, B. R. (2017). The Use of Highly Sensitive Detection Methods for Eradication of Plasmodium. Annals of Clinical Cytology and Pathology , 3(8), [1084].

Nazipi, S., Stødkilde-Jørgensen, K., Scavenius, C. & Brüggemann, H. (2017). The Skin Bacterium Propionibacterium acnes Employs Two Variants of Hyaluronate Lyase with Distinct Properties. Microorganisms, 5(3). https://doi.org/10.3390/microorganisms5030057

Poulsen, E. T., Pedersen, K. W., Marzeda, A. M. & Enghild, J. J. (2017). The Serum Amyloid P Component (SAP) Interactome in Human Plasma Containing Physiological Calcium Levels. Biochemistry, 56(6), 896-902. https://doi.org/10.1021/acs.biochem.6b01027

Qvist, P., Christensen, J. H., Vardya, I., Rajkumar, A. P., Mørk, A., Paternoster, V. ... Børglum, A. D. (2017). The Schizophrenia-Associated BRD1 Gene Regulates Behavior, Neurotransmission, and Expression of Schizophrenia Risk Enriched Gene Sets in Mice. Biological Psychiatry, 82(1), 62-76. https://doi.org/10.1016/j.biopsych.2016.08.037

Christiansen, S. H., Murphy, R. A., Juul-Madsen, K., Fredborg, M., Hvam, M. L., Axelgaard, E. ... Vorup-Jensen, T. (2017). The Immunomodulatory Drug Glatiramer Acetate is Also an Effective Antimicrobial Agent that Kills Gram-negative Bacteria. Scientific Reports, 7, [15653]. https://doi.org/10.1038/s41598-017-15969-3

Hjortebjerg, R., Laugesen, E., Høyem, P., Oxvig, C., Stausbøl-Grøn, B., Knudsen, S. T. ... Frystyk, J. (2017). The IGF system in patients with type 2 diabetes: associations with markers of cardiovascular target organ damage. European Journal of Endocrinology. Supplement, 176(5), 521-531. https://doi.org/10.1530/EJE-16-0940

Brito, A., Grapov, D., Fahrmann, J., Harvey, D., Green, R., Miller, J. ... Allen, L. (2017). The Human Serum Metabolome of Vitamin B-12 Deficiency and Repletion, and Associations with Neurological Function in Elderly Adults. Journal of Nutrition, 147(10), 1839–1849. https://doi.org/10.3945/jn.117.248278

Sikora, E. & Rattan, S. (2017). The Future of Ageing: not more of the same. Biogerontology, 18(4), 429-432. https://doi.org/10.1007/s10522-017-9720-x

Kawaharada, Y., James, E. K., Kelly, S., Sandal, N. & Stougaard, J. (2017). The Ethylene Responsive Factor Required for Nodulation1 (ERN1) Transcription Factor is Required for Infection-Thread Formation in Lotus japonicus. Molecular Plant - Microbe Interactions, 30(3), 194-204. https://doi.org/10.1094/MPMI-11-16-0237-R

Fjelstrup, S., Andersen, M. B., Thomsen, J., Wang, J., Stougaard, M., Pedersen, F. S. ... Knudsen, B. R. (2017). The Effects of Dithiothreitol on DNA. Sensors, 17(6), [1201]. https://doi.org/10.3390/s17061201

Malmos, K. G., Stenvang, M., Sahin, C., Christiansen, G. & Otzen, D. E. (2017). The Changing Face of Aging: Highly Sulfated Glycosaminoglycans Induce Amyloid Formation in a Lattice Corneal Dystrophy Model Protein. Journal of Molecular Biology, 429(18). https://doi.org/10.1016/j.jmb.2017.07.014

Malmos, K., Blancas-Mejia, L. M., Weber, B., Buchner, J., Ramirez-Alvarado, M., Naiki, H. & Otzen, D. (2017). ThT 101: a primer on the use of thioflavin T to investigate amyloid formation. Amyloid: the Journal of Protein Folding Disorders, 24(1), 1-16. https://doi.org/10.1080/13506129.2017.1304905

Westberg, M., Bregnhøj, M., Etzerodt, M. & Ogilby, P. R. (2017). Temperature Sensitive Singlet Oxygen Photosensitization by LOV-Derived Fluorescent Flavoproteins. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 121(12), 2561-2574. https://doi.org/10.1021/acs.jpcb.7b00561

Meola, N. & Jensen, T. H. (2017). Targeting the nuclear RNA exosome: Poly(A) binding proteins enter the stage. RNA Biology, 14(7), 820-826. https://doi.org/10.1080/15476286.2017.1312227

Steger, M., Diez, F., Dhekne, H. S., Lis, P., Nirujogi, R. S., Karayel, O. ... Mann, M. (2017). Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis. eLife, 6, [e31012]. https://doi.org/10.7554/eLife.31012

Bocchio, M., Nabavi, S. & Capogna, M. (2017). Synaptic Plasticity, Engrams, and Network Oscillations in Amygdala Circuits for Storage and Retrieval of Emotional Memories. Neuron, 94(4), 731-743. https://doi.org/10.1016/j.neuron.2017.03.022

He, Y., Staley, J. P., Andersen, G. R. & Nielsen, K. H. (2017). Structure of DEAH/RHA ATPase Prp43p bound to RNA implicates a pair of hairpins and motif Va in translocation along RNA. RNA, 23, 1110-1124. https://doi.org/10.1261/rna.060954.117

Mortensen, S. A., Sander, B., Jensen, R. K., Pedersen, J. S., Golas, M. M., Jensenius, J. C. ... Andersen, G. R. (2017). Structure and activation of C1, the complex initiating the classical pathway of the complement cascade. Proceedings of the National Academy of Sciences of the United States of America, 114(5), 986-991. https://doi.org/10.1073/pnas.1616998114

Gadeberg, T. A. F., Pedersen, D. V. & Andersen, G. R. (2017). Structural studies of convertases in the complement system. The properdin-stabilised proconvertase, and the C5 convertase. Molecular Immunology, 89(Special issue: EMCHD2017), 198. https://doi.org/10.1016/j.molimm.2017.06.208

Xu, P., Andreasen, P. A. & Huang, M. (2017). Structural principles in the development of cyclic peptidic enzyme inhibitors. International Journal of Biological Sciences, 13(10), 1222-1233. https://doi.org/10.7150/ijbs.21597

Senissar, M., Manav, M. C. & Brodersen, D. E. (2017). Structural conservation of the PIN domain active site across all domains of life. Protein Science, 26(8), 1474-1492. https://doi.org/10.1002/pro.3193

Taschner, M., Mourao, A., Awasthi, M., Basquin, J. & Lorentzen, E. (2017). Structural basis of outer dynein arm intraflagellar transport by the transport adaptor protein ODA16 and the intraflagellar transport protein IFT46. Journal of Biological Chemistry, 292(18), 7462-7473. https://doi.org/10.1074/jbc.M117.780155

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Lisbeth Heilesen

Revised 23.01.2020