Peer-reviewed articles

Publications from the department

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Peer-reviewed publications at MBG - 2025

Displaying results 251 to 57 out of 57

Peer-reviewed publications at MBG - all years

Dai, Y., Idorn, M., Serrero, M. C., Pan, X., Thomsen, E. A., Narita, R., Maimaitili, M., Qian, X., Iversen, M. B., Reinert, L. S., Flygaard, R. K., Chen, M., Ding, X., Zhang, B. C., Carter-Timofte, M. E., Lu, Q., Jiang, Z., Zhong, Y., Zhang, S. ... Paludan, S. R. (2024). TMEFF1 is a neuron-specific restriction factor for herpes simplex virus. Nature, 632(8024), 383-389. https://doi.org/10.1038/s41586-024-07670-z

Rivas-González, I., Schierup, M. H., Wakeley, J. & Hobolth, A. (2024). Trails: Tree reconstruction of ancestry using incomplete lineage sorting. PLOS Genetics, 20(2), Article e1010836. https://doi.org/10.1371/journal.pgen.1010836

Pektas, A., Panitz, F. & Thomsen, B. (2024). TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation. Genes, 15(12), Article 1547. https://doi.org/10.3390/genes15121547

Monti, M., Milanetti, E., Frans, M. T., Miotto, M., Di Rienzo, L., Baranov, M. V., Gosti, G., Somavarapu, A. K., Nagaraj, M., Golbek, T. W., Rossing, E., Moons, S. J., Boltje, T. J., van den Bogaart, G., Weidner, T., Otzen, D. E., Tartaglia, G. G., Ruocco, G. & Roeters, S. J. (2024). Two Receptor Binding Strategy of SARS-CoV-2 Is Mediated by Both the N-Terminal and Receptor-Binding Spike Domain. The journal of physical chemistry. B, 128(2), 451-464. https://doi.org/10.1021/acs.jpcb.3c06258

Jørgensen, A. G., Dupont, D. M., Fjelstrup, S., Bus, C., Hansen, C. B., Benfield, T., Garred, P., Heegaard, P. M. H. & Kjems, J. (2024). Unbiased plasma profiling using pre-selected RNA aptamer pools predicts mortality in COVID-19 and identifies protein risk factors. Molecular Therapy Nucleic Acids, 35(3), Article 102253. https://doi.org/10.1016/j.omtn.2024.102253

Andersen, J. S., Vijayakumaran, A., Godbehere, C., Lorentzen, E., Mennella, V. & Schou, K. B. (2024). Uncovering structural themes across cilia microtubule inner proteins with implications for human cilia function. Nature Communications, 15(1), Article 2687. https://doi.org/10.1038/s41467-024-46737-3

Serrano, K., Tedeschi, F., Andersen, S. U. & Scheller, H. V. (2024). Unraveling plant-microbe symbioses using single-cell and spatial transcriptomics. Trends in Plant Science, 29(12), 1356-1367. https://doi.org/10.1016/j.tplants.2024.06.008

Ottosson, F., Russo, F., Abrahamsson, A., MacSween, N., Courraud, J., Skogstrand, K., Melander, O., Ericson, U., Orho-Melander, M., Cohen, A. S., Grove, J., Mortensen, P. B., Hougaard, D. M. & Ernst, M. (2024). Unraveling the metabolomic architecture of autism in a large Danish population-based cohort. BMC Medicine, 22(1), Article 302. https://doi.org/10.1186/s12916-024-03516-7

Paiva, P., Teixeira, L. M. C., Wei, R., Liu, W., Weber, G., Morth, J. P., Westh, P., Petersen, A. R., Johansen, M. B., Sommerfeldt, A., Sandahl, A., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2024). Unveiling the enzymatic pathway of UMG-SP2 urethanase: insights into polyurethane degradation at the atomic level. Chemical Science, 16(5), 2437-2452. https://doi.org/10.1039/d4sc06688j

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2024). Validation of behavioural sampling techniques for 20-25 kg pigs during transport. Livestock Science, 280, Article 105411. https://doi.org/10.1016/j.livsci.2024.105411

Nielsen, L. S., Šantl-Temkiv, T., Palomeque Sánchez, M., Massling, A., Ward, J. C., Jensen, P. B., Boesen, T., Petters, M., Finster, K., Bilde, M. & Rosati, B. (2024). Water Uptake of Airborne Cells of P. syringae Measured with a Hygroscopicity Tandem Differential Mobility Analyzer. Environmental Science & Technology, 58(43), 19211-19221. https://doi.org/10.1021/acs.est.4c01817

Kim, S. W., Lee, H., Song, D. Y., Lee, G. H., Ji, J., Park, J. W., Han, J. H., Lee, J. W., Byun, H. J., Son, J. H., Kim, Y. R., Lee, Y., Kim, J., Jung, A., Lee, J., Kim, E., Kim, S. H., Lee, J. H., Satterstrom, F. K. ... An, J. Y. (2024). Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism. Genome Medicine, 16(1), 114. Article 114. https://doi.org/10.1186/s13073-024-01385-6

Lin, J., Bjørk, P. K., Kolte, M. V., Poulsen, E., Dedic, E., Drace, T., Andersen, S. U., Nadzieja, M., Liu, H., Castillo-Michel, H., Escudero, V., González-Guerrero, M., Boesen, T., Pedersen, J. S., Stougaard, J., Andersen, K. R. & Reid, D. (2024). Zinc mediates control of nitrogen fixation via transcription factor filamentation. Nature, 631(8019), 164-169. https://doi.org/10.1038/s41586-024-07607-6

Andersen, C. B., Lausdahl, A. K., Nielsen, J., Clausen, M. P., Mulder, F. A. A., Otzen, D. E. & Arnspang, E. C. (2023). 4-Oxo-2-nonenal-Induced α-Synuclein Oligomers Interact with Membranes in the Cell, Leading to Mitochondrial Fragmentation. Biochemistry, 62(16), 2417-2425. https://doi.org/10.1021/acs.biochem.3c00114

Seeler, S., Andersen, M. S., Sztanka-Toth, T., Rybiczka-Tešulov, M., van den Munkhof, M. H., Chang, C. C., Maimaitili, M., Venø, M. T., Hansen, T. B., Pasterkamp, R. J., Rybak-Wolf, A., Denham, M., Rajewsky, N., Kristensen, L. S. & Kjems, J. (2023). A Circular RNA Expressed from the FAT3 Locus Regulates Neural Development. Molecular Neurobiology, 60(6), 3239–3260. https://doi.org/10.1007/s12035-023-03253-7

Fruergaard, M. U., Nielsen, C. J. F., Kjeldsen, C. R., Iversen, L., Andersen, J. L. & Nissen, P. (2023). Activation and inhibition of the C-terminal kinase domain of p90 ribosomal S6 kinases. Life Science Alliance, 6(5), Article e202201425. https://doi.org/10.26508/lsa.202201425

Dieudonné, T., Kümmerer, F., Laursen, M. J., Stock, C., Flygaard, R. K., Khalid, S., Lenoir, G., Lyons, J. A., Lindorff-Larsen, K. & Nissen, P. (2023). Activation and substrate specificity of the human P4-ATPase ATP8B1. Nature Communications, 14, Article 7492. https://doi.org/10.1038/s41467-023-42828-9

Coutant, M. P., Malmkvist, J., Tallet, C., Williams, C., Kaiser, M., Foldager, L. & Herskin, M. S. (2023). Administration of procaine-based local anaesthetic prior to surgical castration influences post-operative behaviours of piglets. Applied Animal Behaviour Science, 258, Article 105813. https://doi.org/10.1016/j.applanim.2022.105813

Pedersen, E. M., Agerbo, E., Plana-Ripoll, O., Steinbach, J., Krebs, M. D., Hougaard, D. M., Werge, T., Nordentoft, M., Børglum, A. D., Musliner, K. L., Ganna, A., Schork, A. J., Mortensen, P. B., McGrath, J. J., Privé, F. & Vilhjálmsson, B. J. (2023). ADuLT: An efficient and robust time-to-event GWAS. Nature Communications, 14(1), Article 5553. https://doi.org/10.1038/s41467-023-41210-z

Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A. ... Bonet, T. M. (2023). A global catalog of whole-genome diversity from 233 primate species. Science, 380(6648), 906-913. https://doi.org/10.1126/science.abn7829

Kelly, S., Hansen, S. B., Rübsam, H., Saake, P., Pedersen, E. B., Gysel, K., Madland, E., Wu, S., Wawra, S., Reid, D., Sullivan, J. T., Blahovska, Z., Vinther, M., Muszynski, A., Azadi, P., Thygesen, M. B., Aachmann, F. L., Ronson, C. W., Zuccaro, A. ... Stougaard, J. (2023). A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus. PLoS Biology, 21(5), Article e3002127. https://doi.org/10.1371/journal.pbio.3002127

Li, Z., Anankanbil, S., Li, L., Lyu, J., Nadzieja, M. & Guo, Z. (2023). Alkylsuccinylated oxidized cellulose-based amphiphiles as a novel multi-purpose ingredient for stabilizing O/W emulsions. Food Hydrocolloids, 134, Article 108014. https://doi.org/10.1016/j.foodhyd.2022.108014

Ali, S. A., Chung, K. H. K., Forgham, H., Olsen, W. P., Kakinen, A., Balaji, A., Otzen, D. E., Davis, T. P. & Javed, I. (2023). Alzheimer's Progenitor Amyloid-β Targets and Dissolves Microbial Amyloids and Impairs Biofilm Function. Advanced Science, 10(29), Article e2301423. https://doi.org/10.1002/advs.202301423

Sun, C. & Schuman, E. (2023). A multi-omics view of neuronal subcellular protein synthesis. Current Opinion in Neurobiology, 80, Article 102705. https://doi.org/10.1016/j.conb.2023.102705

Sun, C., Desch, K., Nassim-Assir, B., Giandomenico, S. L., Nemcova, P., Langer, J. D. & Schuman, E. M. (2023). An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Science, 380(6647), Article 811. https://doi.org/10.1126/SCIENCE.ADF2018

Jespersen, J. H., Harazin, A., Bohn, A. B., Christensen, A., Lorentzen, E. & Lorentzen, A. (2023). Analysis of cortical cell polarity by imaging flow cytometry. Journal of Cellular Biochemistry, 124(11), 1685-1694. https://doi.org/10.1002/jcb.30476

Borg, K. N., Cheng, G., Shetty, A., Wang, T., Tesauro, C., Knudsen, B. R. & Ho, Y.-P. (2023). An Integrated Platform for the Assessment of Fluorescent Signals in Hydrogel Beads Produced by Droplet Microfluidics. In Proceedings 2023 IEEE 23rd International Conference on Nanotechnology (NANO) (pp. 180-184). IEEE. https://doi.org/10.1109/NANO58406.2023.10231287

Omelková, M., Fenger, C. D., Murray, M., Hammer, T. B., Pravata, V. M., Bartual, S. G., Czajewski, I., Bayat, A., Ferenbach, A. T., Stavridis, M. P. & van Aalten, D. M. F. (2023). An O-GlcNAc transferase pathogenic variant linked to intellectual disability affects pluripotent stem cell self-renewal. DMM Disease Models and Mechanisms, 16(6), Article dmm049132. https://doi.org/10.1242/dmm.049132

Yuan, C., Tang, L., Lopdell, T., Petrov, V. A., Oget-Ebrad, C., Moreira, G. C. M., Duarte, J. L. G., Sartelet, A., Cheng, Z., Salavati, M., Wathes, D. C., Crowe, M. A., GplusE Consortium, Coppieters, W., Littlejohn, M., Charlier, C., Druet, T., Georges, M. & Takeda, H. (2023). An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants. Genome Research, 33(10), 1848-1864. https://doi.org/10.1101/gr.277947.123

Sampedro Vallina, N., McRae, E. K. S., Geary, C. & Andersen, E. S. (2023). An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly. Small (Weinheim an der Bergstrasse, Germany), 19(13), e2204651. Article 2204651. https://doi.org/10.1002/smll.202204651

Ferapontov, A., Omer, M., Baudrexel, I., Nielsen, J. S., Dupont, D. M., Juul-Madsen, K., Steen, P., Eklund, A. S., Thiel, S., Vorup-Jensen, T., Jungmann, R., Kjems, J. & Degn, S. E. (2023). Antigen footprint governs activation of the B cell receptor. Nature Communications, 14(1), Article 976. https://doi.org/10.1038/s41467-023-36672-0

Manjunath, L., Oh, S., Ortega, P., Bouin, A., Bournique, E., Sanchez, A., Martensen, P. M., Auerbach, A. A., Becker, J. T., Seldin, M., Harris, R. S., Semler, B. L. & Buisson, R. (2023). APOBEC3B drives PKR-mediated translation shutdown and protects stress granules in response to viral infection. Nature Communications, 14(1), Article 820. https://doi.org/10.1038/s41467-023-36445-9

Lopes-Rodrigues, V., Boxy, P., Sim, E., Park, D. I., Habeck, M., Carbonell, J., Andersson, A., Fernández-Suárez, D., Nissen, P., Nykjær, A. & Kisiswa, L. (2023). AraC interacts with p75^NTR transmembrane domain to induce cell death of mature neurons. Cell Death and Disease, 14(7), Article 440. https://doi.org/10.1038/s41419-023-05979-7

Montiel, J., García-Soto, I., James, E. K., Reid, D., Cárdenas, L., Napsucialy-Mendivil, S., Ferguson, S., Dubrovsky, J. G. & Stougaard, J. (2023). Aromatic amino acid biosynthesis impacts root hair development and symbiotic associations in Lotus japonicus. Plant Physiology, 193(2), 1508-1526. https://doi.org/10.1093/plphys/kiad398

Rouvière, J. O., Salerno-Kochan, A., Lykke-Andersen, S., Garland, W., Dou, Y., Rathore, O., Molska, E. Š., Wu, G., Schmid, M., Bugai, A., Jakobsen, L., Žumer, K., Cramer, P., Andersen, J. S., Conti, E. & Jensen, T. H. (2023). ARS2 instructs early transcription termination-coupled RNA decay by recruiting ZC3H4 to nascent transcripts. Molecular Cell, 83(13), 2240-2257. https://doi.org/10.1016/j.molcel.2023.05.028

Ferguson, S., Abel, N. B., Reid, D., Madsen, L. H., Luu, T. B., Andersen, K. R., Stougaard, J. & Radutoiu, S. (2023). A simple and efficient protocol for generating transgenic hairy roots using Agrobacterium rhizogenes. PLOS ONE, 18(11), Article e0291680. https://doi.org/10.1371/journal.pone.0291680

Mohammad-Beigi, H., Wijaya, W., Madsen, M., Hayashi, Y., Li, R., Maria Rovers, T. A., Jæger, T. C., Buell, A. K., Hougaard, A. B., Kirkensgaard, J. J. K., Westh, P., Ipsen, R. & Svensson, B. (2023). Association of caseins with β-lactoglobulin influenced by temperature and calcium ions: A multi-parameter analysis. Food Hydrocolloids, 137, Article 108373. https://doi.org/10.1016/j.foodhyd.2022.108373

Wurtz, K. E., Tahamtani, F. M., Foldager, L., Thodberg, K. & Riber, A. B. (2023). Associations of range use with individual behaviour, clinical welfare indicators, fear response and gastrointestinal characteristics of two laying hen hybrids. Applied Animal Behaviour Science, 265, Article 105978. https://doi.org/10.1016/j.applanim.2023.105978

Abild Meyer, C., De Dios Andres, P., Brodszkij, E., Westensee, I. N., Lyons, J., Vaz, S. H. & Städler, B. (2023). Astrocytes in Paper Chips and Their Interaction with Hybrid Vesicles. Advanced Biology, 7(1), Article 2200209. https://doi.org/10.1002/adbi.202200209

Książek, M., Goulas, T., Mizgalska, D., Rodríguez-Banqueri, A., Eckhard, U., Veillard, F., Waligórska, I., Benedyk-Machaczka, M., Sochaj-Gregorczyk, A. M., Madej, M., Thøgersen, I. B., Enghild, J. J., Cuppari, A., Arolas, J. L., de Diego, I., López-Pelegrín, M., Garcia-Ferrer, I., Guevara, T., Dive, V. ... Gomis-Rüth, F. X. (2023). A unique network of attack, defence and competence on the outer membrane of the periodontitis pathogen Tannerella forsythia. Chemical Science, 14(4), 869-888. https://doi.org/10.1039/d2sc04166a

ADHD Working Group of the Psychiatric Genomics Consortium (2023). Author Correction: Genome-wide analyses of ADHD identify 27 risk loci, refine the genetic architecture and implicate several cognitive domains. Nature Genetics, 55(4), 730. https://doi.org/10.1038/s41588-023-01350-w

Kofod Petersen, A., Staun Larsen, L. & Villesen, P. (2023). Automated use of 3D data in forensic odontology identification. Abstract from PhD dag, Aarhus, Denmark. https://phd.health.au.dk/fileadmin/phd.health.au.dk/Health_NY_filliste/About_us/Events/PhD_Day_2023/Abstract_book_PhD_Day_2023.pdf

Kofod Petersen, A., Forgie, A. H., Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2023). Automatic tissue removal from 3D dental photoscans. Abstract from Trienial I.O.F.O.S. Congres of Forensic Odonto-Stomatology, Dubrovnik, Croatia. https://iofos.eu/wp-content/uploads/2023/07/IOFOS.-Book-of-abstracts.pdf

Ung, K. L., Schulz, L., Kleine-Vehn, J., Pedersen, B. P. & Hammes, U. Z. (2023). Auxin transport at the endoplasmic reticulum: Roles and structural similarity of PIN-FORMED and PIN-LIKES. Journal of Experimental Botany, 74(22), 6893-6903. https://doi.org/10.1093/jxb/erad192

Larsen, K. E. (2023). Balaena mysticetus rhodopsin (RHO) mRNA, complete cds. GenBank Accession No. OQ632458. Dataset

Catapano, C., Rahm, J. V., Omer, M., Teodori, L., Kjems, J., Dietz, M. S. & Heilemann, M. (2023). Biased activation of the receptor tyrosine kinase HER2. Cellular and Molecular Life Sciences, 80(6), Article 158. https://doi.org/10.1007/s00018-023-04806-8