Peer-reviewed articles

Publications from the department

Journal covers made by researchers from our department

Peer-reviewed publications at MBG - 2025

Displaying results 251 to 227 out of 227

Peer-reviewed publications at MBG - all years

Fleming, S. A., Reyes, S. M., Donovan, S. M., Hernell, O., Jiang, R., Lönnerdal, B., Neu, J., Steinman, L., Sørensen, E. S., West, C. E., Kleinman, R. & Wallingford, J. C. (2024). An expert panel on the adequacy of safety data and physiological roles of dietary bovine osteopontin in infancy. Frontiers in nutrition, 11, Article 1404303. https://doi.org/10.3389/fnut.2024.1404303

Vallina, N. S., McRae, E. K. S., Geary, C. & Andersen, E. S. (2024). An RNA origami robot that traps and releases a fluorescent aptamer. Science Advances, 10(12), Article eadk1250. https://doi.org/10.1126/sciadv.adk1250

Guerreiro, I., Rang, F. J., Kawamura, Y. K., Kroon-Veenboer, C., Korving, J., Groenveld, F. C., van Beek, R. E., Lochs, S. J. A., Boele, E., Peters, A. H. M. F. & Kind, J. (2024). Antagonism between H3K27me3 and genome-lamina association drives atypical spatial genome organization in the totipotent embryo. Nature Genetics, 56(10), 2228-2237. https://doi.org/10.1038/s41588-024-01902-8

Otzen, D. E. (2024). Antibodies and α-synuclein: What to target against Parkinson's Disease? Biochimica et Biophysica Acta - Proteins and Proteomics, 1872(2), Article 140943. https://doi.org/10.1016/j.bbapap.2023.140943

Pierre-Ferrer, S., Collins, B., Lukacsovich, D., Wen, SA., Cai, Y., Winterer, J., Yan, J., Pedersen, L., Földy, C. & Brown, S. A. (2024). A phosphate transporter in VIPergic neurons of the suprachiasmatic nucleus gates locomotor activity during the light/dark transition in mice. Cell Reports, 43(5), Article 114220. https://doi.org/10.1016/j.celrep.2024.114220

Boegholm, N., Petriman, N. A., Tanvir, N. M. & Lorentzen, E. (2024). Architecture of RabL2-associated complexes at the ciliary base: A structural modeling perspective: Deciphering the structural organization of ciliary RabL2 complexes. BioEssays, 46(9), Article 2300222. https://doi.org/10.1002/bies.202300222

Mirarab, S., Rivas-González, I., Feng, S., Stiller, J., Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., Zhang, G. & Braun, E. L. (2024). A region of suppressed recombination misleads neoavian phylogenomics. Proceedings of the National Academy of Sciences (PNAS), 121(15), Article e2319506121. https://doi.org/10.1073/pnas.2319506121

Hejlesen, R., Scheffler, F. B., Byrge, C. G., Kjær-Sørensen, K., Oxvig, C., Fago, A. & Malte, H. (2024). Assessing metabolic rates in zebrafish using a 3D-printed intermittent-flow respirometer and swim tunnel system. Biology Open, 13(6), Article bio060375. https://doi.org/10.1242/bio.060375

Garland, W., Rouvière, J. O. & Heick Jensen, T. (2024). Assigning function to an unexplored Integrator module. Molecular Cell, 84(13), 2405-2406. https://doi.org/10.1016/j.molcel.2024.06.014

Dijkema, F. M., Escarpizo-Lorenzana, M. I., Nordentoft, M. K., Rabe, H. C., Sahin, C., Landreh, M., Branca, R. M., Sørensen, E. S., Christensen, B., Prestel, A., Teilum, K. & Winther, J. R. (2024). A suicidal and extensively disordered luciferase with a bright luminescence. Protein Science, 33(8), Article e5115. https://doi.org/10.1002/pro.5115

Santos, J., Cuellar, J., Pallarès, I., Byrd, E. J., Lends, A., Moro, F., Abdul-Shukkoor, M. B., Pujols, J., Velasco-Carneros, L., Sobott, F., Otzen, D. E., Calabrese, A. N., Muga, A., Pedersen, J. S., Loquet, A., Valpuesta, J. M., Radford, S. E. & Ventura, S. (2024). A Targetable N-Terminal Motif Orchestrates α-Synuclein Oligomer-to-Fibril Conversion. Journal of the American Chemical Society, 146(18), 12702-12711. https://doi.org/10.1021/jacs.4c02262

Vieira de Sá, R., Sudria-Lopez, E., Cañizares Luna, M., Harschnitz, O., van den Heuvel, D. M. A., Kling, S., Vonk, D., Westeneng, H. J., Karst, H., Bloemenkamp, L., Varderidou-Minasian, S., Schlegel, D. K., Mars, M., Broekhoven, M. H., van Kronenburg, N. C. H., Adolfs, Y., Vangoor, V. R., de Jongh, R., Ljubikj, T. ... Pasterkamp, R. J. (2024). ATAXIN-2 intermediate-length polyglutamine expansions elicit ALS-associated metabolic and immune phenotypes. Nature Communications, 15(1), Article 7484. https://doi.org/10.1038/s41467-024-51676-0

Kofod Petersen, A., Forgie, A. H., Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2024). Automatic removal of soft tissue from 3D dental photo scans; an important step in automating future forensic odontology identification. Scientific Reports, 14, Article 12421. https://doi.org/10.1038/s41598-024-63198-2

Otzen, D. & d'Angelo, J. (2024). BBA: 2024 and beyond. Biochimica et Biophysica Acta - General Subjects, 1868(2), Article 130524. https://doi.org/10.1016/j.bbagen.2023.130524

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Gould, L. M., Thodberg, K., Schrøder-Petersen, D. L. & Herskin, M. S. (2024). Behaviour of cull sows during transport to slaughter – Effects of journey duration, a stationary period and temperature. Applied Animal Behaviour Science, 271, Article 106174. https://doi.org/10.1016/j.applanim.2024.106174

Overgaard, C. K., Jamy, M., Radutoiu, S., Burki, F. & Dueholm, M. K. D. (2024). Benchmarking long-read sequencing strategies for obtaining ASV-resolved rRNA operons from environmental microeukaryotes. Molecular Ecology Resources, 24(7), Article e13991. https://doi.org/10.1111/1755-0998.13991

Palviainen, M., Puutio, J., Østergaard, R. H., Eble, J. A., Maaninka, K., Butt, U., Ndika, J., Kari, O. K., Kamali-Moghaddam, M., Kjaer-Sorensen, K., Oxvig, C., Aransay, A. M., Falcon-Perez, J. M., Federico, A., Greco, D., Laitinen, S., Hayashi, Y. & Siljander, P. R. M. (2024). Beyond basic characterization and omics: Immunomodulatory roles of platelet-derived extracellular vesicles unveiled by functional testing. Journal of Extracellular Vesicles, 13(10), Article e12513. https://doi.org/10.1002/jev2.12513

Loeschcke, V. & Schierup, M. H. (2024). Biographical sketch: Freddy Bugge Christiansen. Theoretical Population Biology, 156, 130. https://doi.org/10.1016/j.tpb.2024.02.006

Kaur, G. & Rattan, S. (Eds.) (2024). Brain and Mental Health in Ageing. Springer, Cham. Healthy Ageing and Longevity Vol. 21 https://doi.org/10.1007/978-3-031-68513-2

Chrenková, A., Bisiak, F. & Brodersen, D. E. (2024). Breaking bad nucleotides: understanding the regulatory mechanisms of bacterial small alarmone hydrolases. Trends in Microbiology, 32(8), 769-780. https://doi.org/10.1016/j.tim.2023.12.011

Digel, L., Mierzwa, M., Bonné, R., Zieger, S. E., Pavel, I. A., Ferapontova, E., Koren, K., Boesen, T., Harnisch, F., Marshall, I. P. G., Nielsen, L. P. & Kuhn, A. (2024). Cable Bacteria Skeletons as Catalytically Active Electrodes. Angewandte Chemie - International Edition, 63(6), Article e202312647. https://doi.org/10.1002/anie.202312647

Brix, F., Verner Christiansen, M. P. & Hammer, B. (2024). Cascading symmetry constraint during machine learning-enabled structural search for sulfur-induced Cu(111)- ( 43 × 43 ) surface reconstruction. Journal of Chemical Physics, 160(17), Article 174107. https://doi.org/10.1063/5.0201421

Pirhaghi, M., Mamashli, F., Moosavi-Movahedi, F., Arghavani, P., Amiri, A., Davaeil, B., Mohammad-Zaheri, M., Mousavi-Jarrahi, Z., Sharma, D., Langel, Ü., Otzen, D. E. & Saboury, A. A. (2024). Cell-Penetrating Peptides: Promising Therapeutics and Drug-Delivery Systems for Neurodegenerative Diseases. Molecular Pharmaceutics, 21(5), 2097-2117. https://doi.org/10.1021/acs.molpharmaceut.3c01167

Nielsen, I. H., Rovsing, A. B., Janns, J. H., Thomsen, E. A., Ruzo, A., Bøggild, A., Nedergaard, F., Møller, C. T., Boesen, T., Degn, S. E., Shah, J. V. & Mikkelsen, J. G. (2024). Cell-targeted gene modification by delivery of CRISPR-Cas9 ribonucleoprotein complexes in pseudotyped lentivirus-derived nanoparticles. Molecular Therapy Nucleic Acids, 35(4), Article 102318. https://doi.org/10.1016/j.omtn.2024.102318

Taleski, M., Jin, M., Chapman, K., Taylor, K., Winning, C., Frank, M., Imin, N. & Djordjevic, M. A. (2024). CEP hormones at the nexus of nutrient acquisition and allocation, root development, and plant-microbe interactions. Journal of Experimental Botany, 75(2), 538-552. https://doi.org/10.1093/jxb/erad444

Rubio-Pérez, L., Frago, S., Compte, M., Navarro, R., Harwood, S. L., Lázaro-Gorines, R., Gómez-Rosel, M., Hangiu, O., Silva-Pilipich, N., Vanrell, L., Smerdou, C. & Álvarez-Vallina, L. (2024). Characterization of a Trispecific PD-L1 Blocking Antibody That Exhibits EGFR-Conditional 4-1BB Agonist Activity. Antibodies, 13(2), Article 34. https://doi.org/10.3390/antib13020034

Tamburini, P., Pedersen, D. V., Devore, D., Cone, J., Patel, R., Hunter, T., Sun, F., Andersen, G. R. & Hunter, J. (2024). Characterization of the bispecific VHH antibody tarperprumig (ALXN1820) specific for properdin and designed for low-volume administration. mAbs, 16(1), Article 2415060. https://doi.org/10.1080/19420862.2024.2415060

Dodd, R. J., Blundell, C. D., Sattelle, B. M., Enghild, J. J., Milner, C. M. & Day, A. J. (2024). Chemical modification of hyaluronan oligosaccharides differentially modulates hyaluronan–hyaladherin interactions. The Journal of Biological Chemistry, 300(9), Article 107668. https://doi.org/10.1016/j.jbc.2024.107668

Andersen, D. G., Pedersen, A. B., Jørgensen, M. H., Montasell, M. C., Søgaard, A. B., Chen, G., Schroeder, A., Andersen, G. R. & Zelikin, A. N. (2024). Chemical Zymogens and Transmembrane Activation of Transcription in Synthetic Cells. Advanced Materials, 36(6), Article 2309385. https://doi.org/10.1002/adma.202309385

Okholm, T. L. H., Kamstrup, A. B., Nielsen, M. M., Hollensen, A. K., Graversgaard, M. L., Sørensen, M. H., Kristensen, L. S., Vang, S., Park, S. S., Yeo, E., Dyrskjøt, L., Kjems, J., Pedersen, J. S. & Damgaard, C. K. (2024). circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA. eLife, 13, Article RP91783. https://doi.org/10.7554/eLife.91783

Rybiczka-Tešulov, M., Garritsen, O., Venø, M. T., Wieg, L., Dijk, R. V., Rahimi, K., Gomes-Duarte, A., Wit, M. D., van de Haar, L. L., Michels, L., van Kronenburg, N. C. H., van der Meer, C., Kjems, J., Vangoor, V. R. & Pasterkamp, R. J. (2024). Circular RNAs regulate neuron size and migration of midbrain dopamine neurons during development. Nature Communications, 15(1), Article 6773. https://doi.org/10.1038/s41467-024-51041-1

Scoyni, F., Sitnikova, V., Giudice, L., Korhonen, P., Trevisan, D. M., Hernandez de Sande, A., Gomez-Budia, M., Giniatullina, R., Ugidos, I. F., Dhungana, H., Pistono, C., Korvenlaita, N., Välimäki, N. N., Kangas, S. M., Hiltunen, A. E., Gribchenko, E., Kaikkonen-Määttä, M. U., Koistinaho, J., Ylä-Herttuala, S. ... Malm, T. (2024). ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling. Cell Reports, 43(3), Article 113862. https://doi.org/10.1016/j.celrep.2024.113862

Thodberg, K., Foldager, L., Schrøder-Petersen, D. L., Kobek-Kjeldager, C., Gould, L. M. & Herskin, M. S. (2024). Clinical condition of cull sows before and after transport to slaughter – Effects of journey duration and a stationary period. Research in Veterinary Science, 168, Article 105124. https://doi.org/10.1016/j.rvsc.2023.105124

Vangoor, V. R., Giuliani, G., de Wit, M., Rangel, C. K., Venø, M. T., Schulte, J. T., Gomes-Duarte, A., Senthilkumar, K., Puhakka, N., Kjems, J., de Graan, P. N. E. & Pasterkamp, R. J. (2024). Compartment-specific small non-coding RNA changes and nucleolar defects in human mesial temporal lobe epilepsy. Acta Neuropathologica, 148(1), Article 61. https://doi.org/10.1007/s00401-024-02817-8

Stiller, J., Feng, S., Chowdhury, A.-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G. ... Zhang, G. (2024). Complexity of avian evolution revealed by family-level genomes. Nature, 629(8013), 851-860. https://doi.org/10.1038/s41586-024-07323-1

Jensen, I. T., Janss, L., Radutoiu, S. & Waagepetersen, R. (2024). Compositionally aware estimation of crosscorrelations for microbiome data. PLoS One, 19(6), Article e0305032. https://doi.org/10.1371/journal.pone.0305032

Salomonsen, C., Martyn, A., Quilbé, J., Björgvinsdóttir, Þ. N., Andersen, S. U., Radutoiu, S. & Glasius, M. (2024). Comprehensive characterization of the rhizosphere metabolome: A novel method for non-targeted analysis of Lotus japonicus root exudates. Rhizosphere, 32, Article 100957. https://doi.org/10.1016/j.rhisph.2024.100957

Frain, K. M., Dedic, E., Nel, L., Bohush, A., Olesen, E., Thaysen, K., Wüstner, D., Stokes, D. L. & Pedersen, B. P. (2024). Conformational changes in the Niemann-Pick type C1 protein NCR1 drive sterol translocation. Proceedings of the National Academy of Sciences of the United States of America, 121(15), e2315575121. Article e2315575121. https://doi.org/10.1073/pnas.2315575121

Grigoriadis, K., Huebner, A., Bunkum, A., Colliver, E., Frankell, A. M., Hill, M. S., Thol, K., Birkbak, N. J., Swanton, C., Zaccaria, S. & McGranahan, N. (2024). Conipher: a computational framework for scalable phylogenetic reconstruction with error correction. Nature Protocols, 19(1), 159-183. https://doi.org/10.1038/s41596-023-00913-9

Larsen, S. T., Dannersø, J. K., Nielsen, C. J. F., Poulsen, L. R., Palmgren, M. & Nissen, P. (2024). Conserved N-terminal Regulation of the ACA8 Calcium Pump with Two Calmodulin Binding Sites. Journal of Molecular Biology, 436(20), Article 168747. https://doi.org/10.1016/j.jmb.2024.168747

Holst, J. M., Pedersen, M. B., Enemark, M. B., Hansen, M. C., Noerhave, P. R., Plesner, T. L., Frederiksen, H., Moeller, M. B., Hamilton-Dutoit, S. J., Noergaard, P., Mortensen, B. K., Ommen, H. B., Stentoft, J., Tam, W., Ludvigsen, M., Chan, W. C., Birkbak, N. J., Inghirami, G. & d’Amore, F. (2024). Co-shared genomic alterations within tumors from patients with both myeloproliferative neoplasms and lymphoma. Haematologica, 109(12), 4067-4072. https://doi.org/10.3324/haematol.2023.283798

Cai, H., Zhang, B., Ahrenfeldt, J., Joseph, J. V., Riedel, M., Gao, Z., Thomsen, S. K., Christensen, D. S., Bak, R. O., Hager, H., Vendelbo, M. H., Gao, X., Birkbak, N. & Thomsen, M. K. (2024). CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature Communications, 15(1), Article 2088. https://doi.org/10.1038/s41467-024-46370-0, https://doi.org/10.1038/s41467-024-46370-0

Gobet, A., Moissonnier, L. & Chaptal, V. (2024). CryoEM Data Analysis of Membrane Proteins. Practical Considerations on Amphipathic Belts, Ligands, and Variability Analysis. In Bacterial Secretion Systems (Vol. 2715, pp. 471-483). Humana Press. https://doi.org/10.1007/978-1-0716-3445-5_28

McRae, E. K. S., Wan, C. J. K., Kristoffersen, E. L., Hansen, K., Gianni, E., Gallego, I., Curran, J. F., Attwater, J., Holliger, P. & Andersen, E. S. (2024). Cryo-EM structure and functional landscape of an RNA polymerase ribozyme. Proceedings of the National Academy of Sciences (PNAS), 121(3), e2313332121. Article e2313332121. https://doi.org/10.1073/pnas.2313332121

Pedersen, C. N., Yang, F., Ita, S., Xu, Y., Akunuri, R., Trampari, S., Neumann, C. M. T., Desdorf, L. M., Schiøtt, B., Salvino, J. M., Mortensen, O. V., Nissen, P. & Shahsavar, A. (2024). Cryo-EM structure of the dopamine transporter with a novel atypical non-competitive inhibitor bound to the orthosteric site. Journal of Neurochemistry, 168(9), 2043-2055. https://doi.org/10.1111/jnc.16179

Mehmood, S., Thirup, S. S., Ahmed, S., Bashir, N., Saeed, A., Rafiq, M., Saeed, Q., Najam-ul-Haq, M., Khaliq, B., Ibrahim, M., Alonazi, W. B. & Akrem, A. (2024). Crystal structure of Kunitz-type trypsin inhibitor: Entomotoxic effect of native and encapsulated protein targeting gut trypsin of Tribolium castaneum Herbst. Computational and Structural Biotechnology Journal, 23, 3132-3142. https://doi.org/10.1016/j.csbj.2024.07.023

Olsen, W. P., Courtade, G., Peña-Díaz, S., Nagaraj, M., Sønderby, T. V., Mulder, F. A. A., Malle, M. G. & Otzen, D. E. (2024). CsgA gatekeeper residues control nucleation but not stability of functional amyloid. Protein Science, 33(10), Article e5178. https://doi.org/10.1002/pro.5178

Chapman, K., Taleski, M., Frank, M. & Djordjevic, M. A. (2024). C-TERMINALLY ENCODED PEPTIDE (CEP) and cytokinin hormone signaling intersect to promote shallow lateral root angles. Journal of Experimental Botany, 75(2), 631-641. https://doi.org/10.1093/jxb/erad353

Moya-Molina, M., Dorgau, B., Flood, E., Letteboer, S. J. F., Lorentzen, E., Coxhead, J., Smith, G., Roepman, R., Nagaraja Grellscheid, S., Armstrong, L. & Lako, M. (2024). Deciphering the impact of PROM1 alternative splicing on human photoreceptor development and maturation. Cell Death & Disease, 15(10), Article 721. https://doi.org/10.1038/s41419-024-07105-7

Shamsi, W., Heinzelmann, R., Ulrich, S., Kondo, H. & Cornejo, C. (2024). Decoding the RNA virome of the tree parasite Armillaria provides new insights into the viral community of soil-borne fungi. Environmental Microbiology, 26(2), Article e16583. https://doi.org/10.1111/1462-2920.16583

Displaying results 251 to 300 out of 5435

Open Access

Revised 13.11.2025

Lisbeth Heilesen

Department of Molecular Biology and Genetics

Peer-reviewed articles

Publications from the department

Peer-reviewed publications at MBG - 2025

Peer-reviewed publications at MBG - all years

Search for publications