Peer-reviewed articles

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Peer-reviewed publications at MBG - 2025

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Behrens, T., Balasubramanian, J., Secher, J. B.-M., Ivask, M., Kadarmideen, H. & Rabaglino, M. (2025). Effects of in vitro embryo production on the epigenomic profiles of day 15 bovine conceptus. Reproduction, Fertility and Development, 37(1), Article 114. https://doi.org/10.1071/RDv37n1Ab114

Basse Hansen, S., Flygaard, R. K., Kjaergaard, M. & Nissen, P. (2025). Structure of the [Ca]E2P intermediate of Ca²⁺-ATPase 1 from Listeria monocytogenes. EMBO Reports, 26(7), 1709-1723. Article eadd9742. https://doi.org/10.1038/s44319-025-00392-x

Baindoor, S., Gibriel, H. A. Y., Kool, L., Su, J., Demaegd, K. C., Venø, M. T., Van Den Berg, L. H., Kjems, J., Van Es, M. A. & Prehn, J. H. M. (2025). Serum small non-coding RNA define molecular subtypes in amyotrophic lateral sclerosis. Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration. Advance online publication. https://doi.org/10.1080/21678421.2025.2574690

Bærentsen, R. L., Kronborg, K., Brodersen, D. E. & Zhang, Y. E. (2025). Catalytic mechanism and differential alarmone regulation of a conserved stringent nucleosidase. Structure. Advance online publication. https://doi.org/10.1016/j.str.2025.10.012

Auxillos, J., Stigliani, A., Vaagensø, C. S., Garland, W., Niazi, A. M., Valen, E., Jensen, T. H. & Sandelin, A. (2025). True length of diverse capped RNA sequencing (TLDR-seq): 5'-3'-end sequencing of capped RNAs regardless of 3'-end status. Nucleic Acids Research, 53(6), Article gkaf240. https://doi.org/10.1093/nar/gkaf240

Asenjo-Martinez, A., Dragicevic, K., Hou, W. H., Ozsvar, A., Winther Hansen, N., Pfisterer, U., Rydbirk, R., Demharter, S., Møller, B. E., Gasthaus, J., Korshunova, I., Perrier, J. F., Capogna, M., Vasistha, N. A. & Khodosevich, K. (2025). Dysfunction of cortical GABAergic projection neurons as a major hallmark in a model of neuropsychiatric syndrome. Neuron, 113(19), 3204-3223. https://doi.org/10.1016/j.neuron.2025.08.028

Andreasen, M. D., Souza, P. C. T., Schiøtt, B. & Zuzic, L. (2025). Creating Coarse-Grained Systems with COBY: Toward Higher Accuracy of Complex Biological Systems. Journal of Chemical Information and Modeling, 65(10), 4760-4766. https://doi.org/10.1021/acs.jcim.5c00069

André, A. A. M., Rehnberg, N., Garg, A. & Kjærgaard, M. (2025). Toward Design Principles for Biomolecular Condensates for Metabolic Pathways. Advanced Biology, 9(5), Article 2400672. https://doi.org/10.1002/adbi.202400672

Andersen-Civil, A. I. S., Mantel, M., Soh, J., Mostowy, S., Brugman, S. & Vanwalleghem, G. C. (2025). Novel and unscrutinized immune entities of the zebrafish gut. FEBS Letters. Advance online publication. https://doi.org/10.1002/1873-3468.70161

Andersen, H. H., Andersen, M. K., Bossow, K. A., Vestergaard, A. L., Bor, P. & Larsen, A. (2025). High-dose vitamin D supplementation in pregnancy ameliorates obesity-induced increase in maternal IL-1β level without affecting obesity-induced increase in IL-6 and MCP. The Journal of Steroid Biochemistry and Molecular Biology, 250, Article 106742. https://doi.org/10.1016/j.jsbmb.2025.106742

Andersen, C. G., Bavnhøj, L., Brag, S., Bohush, A., Chrenková, A., Driller, J. H. & Pedersen, B. P. (2025). Comparative analysis of STP6 and STP10 unravels molecular selectivity in sugar transport proteins. Proceedings of the National Academy of Sciences of the United States of America, 122(17), Article e2417370122. https://doi.org/10.1073/pnas.2417370122

Almeida, A. V., Jensen, K. T., Harwood, S. L., Jørgensen, M. H., Nielsen, N. S., Thøgersen, I. B., Enghild, J. J. & Andersen, G. R. (2025). Three cryo-EM structures of CD109 reveal its mechanism of protease inhibition. Cell Reports, 44(6), Article 115787. https://doi.org/10.1016/j.celrep.2025.115787

Abdulkadir, M., Larsen, J. T., Clausen, L., Hübel, C., Albiñana, C., Thornton, L. M., Vilhjálmsson, B. J., Bulik, C. M., Yilmaz, Z. & Petersen, L. V. (2025). Descriptives and genetic correlates of eating disorder diagnostic transitions and presumed remission in the Danish registry. Biological Psychiatry, 98(3), 230-236. https://doi.org/10.1016/j.biopsych.2025.01.008

Displaying results 201 to 213 out of 213

Peer-reviewed publications at MBG - all years

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Wernersson, R., Schierup, M. H., Jørgensen, F. G., Gorodkin, J., Panitz, F., Staerfeldt, HH., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Jun, W., Liu, B., Hu, S., Dong, W., Li, W., Wong, GK.-S., Yu, J., Wang, J., Bendixen, C. ... Bolund, L. (2005). Pigs in Sequence Space: A 0.66X Coverage Pig Genome Survey based on Shotgun Sequencing. BMC Genomics, 6(70). http://www.biomedcentral.com/1471-2164/6/70

Welling, M., Mohr, M. A., Ponti, A., Rullan Sabater, L., Boni, A., Kawamura, Y. K., Liberali, P., Peters, A. H., Pelczar, P. & Pantazis, P. (2019). Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins. eLife, 8. https://doi.org/10.7554/eLife.44491

Weizmann, Y. & Andersen, E. S. (2017). RNA nanotechnology-The knots and folds of RNA nanoparticle engineering. MRS Bulletin, 42(12), 930-935. https://doi.org/10.1557/mrs.2017.277

Weissman, L., de Souza-Pinto, N. C., Stevnsner, T. V. & Bohr, V. (2006). DNA repair, mitochondria, and neurodegeneration. Neuroscience, (145), 1318-1329.

Weissman, L., de Souza-Pinto, N. C., Stevnsner, T. & Bohr, V. A. (2007). DNA repair, mitochondria, and neurodegeneration. Neuroscience, 145(4), 1318-1329. https://doi.org/10.1016/j.neuroscience.2006.08.061

Weiss, S., Lamy, P., Rusan, M., Nørgaard, M., Ulhøi, B. P., Knudsen, M., Kassentoft, C. G., Farajzadeh, L., Jensen, J. B., Pedersen, J. S., Borre, M. & Sørensen, K. D. (2024). Exploring the tumor genomic landscape of aggressive prostate cancer by whole-genome sequencing of tissue or liquid biopsies. International Journal of Cancer, 155(2), 298-313. https://doi.org/10.1002/ijc.34949

Weiner, D. J., Wigdor, E. M., Ripke, S., Walters, R. K., Kosmicki, J. A., Grove, J., Samocha, K. E., Goldstein, J. I., Okbay, A., Bybjerg-Grauholm, J., Werge, T., Hougaard, D. M., Taylor, J., Skuse, D., Devlin, B., Anney, R., Sanders, S. J., Bishop, S., Mortensen, P. B. ... iPSYCH-Broad Autism Group (2017). Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders. Nature Genetics, 49(7), 978-985. https://doi.org/10.1038/ng.3863

Weiner, D. J., Ling, E., Erdin, S., Tai, D. J. C., Yadav, R., Grove, J., Fu, J. M., Nadig, A., Carey, C. E., Baya, N., Bybjerg-Grauholm, J., iPSYCH Consortium, ASD Working Group of the Psychiatric Genomics Consortium, ADHD Working Group of the Psychiatric Genomics Consortium, Berretta, S., Macosko, E. Z., Sebat, J., O'Connor, L. J., Hougaard, D. M. ... Robinson, E. B. (2022). Statistical and functional convergence of common and rare genetic influences on autism at chromosome 16p. Nature Genetics, 54(11), 1630-1639. https://doi.org/10.1038/s41588-022-01203-y

Wegel, E., Schauser, L., Sandal, N., Stougaard, J. & Parniske, M. (1998). Mycorrhiza mutants of Lotus japonicus define genetically independent steps during symbiotic infection. Molecular plant-microbe interactions, 11(9), 933-936.

Wedge, E., Ahmadov, U., Hansen, T. B., Gao, Z., Tulstrup, M., Côme, C., Nonavinkere Srivatsan, S., Ahmed, T., Jespersen, J. S., Schlotmann, B. C., Schöllkopf, C., Raaschou-Jensen, K., Ødum, N., Kjems, J., Bak, R. O., Walter, M. J., Grønbæk, K. & Kristensen, L. S. (2023). Impact of U2AF1 mutations on circular RNA expression in myelodysplastic neoplasms. Leukemia, 37(5), 1113-1125. https://doi.org/10.1038/s41375-023-01866-4

Weber, M., Schneider, D., Prodöhl, A., Dreher, C., Becker, C., Underhaug, J., Svane, A. S. P., Malmendal, A., Nielsen, N. C. & Otzen, D. (2011). SDS-facilitated in vitro formation of a transmembrane B-type cytochrome is mediated by changes in local pH. Journal of Molecular Biology, 407(4), 594-606. https://doi.org/10.1016/j.jmb.2011.02.005

Weber, M., Tome, L., Otzen, D. & Schneider, D. (2012). A Ser residue influences the structure and stability of a Pro-kinked transmembrane helix dimer. BBA General Subjects, 1818(9), 2103-7. https://doi.org/10.1016/j.bbamem.2012.04.003

Watson-Haigh, N. S., Kadarmideen, H. N. & Reverter, A. (2009). PCIT: An R package for weighted gene co-expression networks based on partial correlation and information theory approaches. Bioinformatics, 26(3), 411-413. https://doi.org/10.1093/bioinformatics/btp674

Watson-Haigh, N. S., O'Neill, C. J. & Kadarmideen, H. N. (2012). Proximity loggers: Data handling and classification for quality control. IEEE Sensors Journal, 12(5), 1611-1617. Article 6072229. https://doi.org/10.1109/JSEN.2011.2175215

Anorexia Nervosa Genetics Initiative (2019). Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa. Nature Genetics, 51(8), 1207-1214. https://doi.org/10.1038/s41588-019-0439-2

Watkins, T. B. K., Lim, E. L., Petkovic, M., Elizalde, S., Birkbak, N. J., Wilson, G. A., Moore, D. A., Grönroos, E., Rowan, A., Dewhurst, S. M., Demeulemeester, J., Dentro, S. C., Horswell, S., Au, L., Haase, K., Escudero, M., Rosenthal, R., Bakir, M. A., Xu, H. ... Swanton, C. (2020). Pervasive chromosomal instability and karyotype order in tumour evolution. Nature, 587, 126-132. https://doi.org/10.1038/s41586-020-2698-6

Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ingvartsen, K. L., Ferris, C. P., Hostens, M., Crowe, M. A. & GplusE Consortium (2021). Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation. Journal of Dairy Science, 104(3), 3596-3616. https://doi.org/10.3168/jds.2020-19165

Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ferris, C. P., Hostens, M., Crowe, M. A. & GplusE Consortium (2021). Corrigendum to "Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation" (J. Dairy Sci. 104: 3596-3616). Journal of Dairy Science, 104(5), 6327. https://doi.org/10.3168/jds.2021-104-5-6327

Wathes, D. C., Becker, F., Buggiotti, L., Crowe, M. A., Ferris, C. P., Foldager, L., Grelet, C., Hostens, M., Ingvartsen, K. L., Marchitelli, C., Salavati, M., Signorelli, F., Takeda, H., Tang, L., Cheng, Z. & GplusE Consortium (2021). Associations between circulating IGF-1 concentrations, disease status and the leukocyte transcriptome in early lactation dairy cows. Ruminants, 1(2), 147-177. https://doi.org/10.3390/ruminants1020012

Watanabe, T., Sato, T., Amano, T., Kawamura, Y., Kawamura, N., Kawaguchi, H., Yamashita, N., Kurihara, H. & Nakaoka, T. (2008). Dnm3os, a non-coding RNA, is required for normal growth and skeletal development in mice. Developmental Dynamics, 237(12), 3738-48. https://doi.org/10.1002/dvdy.21787

Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R. ... Stadler, P. F. (2007). Structured RNAs in the ENCODE selected regions of the human genome. Genome Research, 17(6), 852-64. https://doi.org/10.1101/gr.5650707

Warrington, N. M., Beaumont, R. N., Horikoshi, M., Day, F. R., Helgeland, Ø., Laurin, C., Bacelis, J., Peng, S., Hao, K., Feenstra, B., Wood, A. R., Mahajan, A., Tyrrell, J., Robertson, N. R., Rayner, N. W., Qiao, Z., Moen, G.-H., Vaudel, M., Marsit, C. J. ... Freathy, R. M. (2019). Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors. Nature Genetics, 51(5), 804-814. https://doi.org/10.1038/s41588-019-0403-1

the iPSYCH-Broad autism group & the 23andMe Research Team (2018). Genome-wide analyses of self-reported empathy: Correlations with autism, schizophrenia, and anorexia nervosa. Translational Psychiatry, 8(1), Article 35. https://doi.org/10.1038/s41398-017-0082-6

Warrier, V., Toro, R., Won, H., Leblond, C. S., Cliquet, F., Delorme, R., De Witte, W., Bralten, J., Chakrabarti, B., Børglum, A. D., Grove, J., Poelmans, G., Hinds, D. A., Bourgeron, T. & Baron-Cohen, S. (2019). Social and non-social autism symptoms and trait domains are genetically dissociable. Communications Biology, 2(1), Article 328. https://doi.org/10.1038/s42003-019-0558-4

Warrier, V., Zhang, X., Reed, P., Havdahl, A., Moore, T. M., Cliquet, F., Leblond, C. S., Rolland, T., Rosengren, A., Rowitch, D. H., Hurles, M. E., Geschwind, D. H., Børglum, A. D., Robinson, E. B., Grove, J., Martin, H. C., Bourgeron, T., Baron-Cohen, S., EU-AIMS LEAP ... Spectrum 10K and APEX Consortia (2022). Genetic correlates of phenotypic heterogeneity in autism. Nature Genetics, 54(9), 1293-1304. https://doi.org/10.1038/s41588-022-01072-5

Warnet, X. L., Bakke Krog, H., Sevillano-Quispe, O. G., Poulsen, H. & Kjaergaard, M. (2021). The C-terminal domains of the NMDA receptor: How intrinsically disordered tails affect signalling, plasticity and disease. European Journal of Neuroscience, 54(8), 6713-6739. https://doi.org/10.1111/ejn.14842

Warncke, S. R. & Knudsen, C. R. (2022). Detection methods targeting the positive- and negative-sense RNA transcripts from plus-stranded RNA viruses. APMIS, 130(5), 284-292. https://doi.org/10.1111/apm.13202

Wang, Y., Knudsen, B. R., Bjergbæk, L., Westergaard, O. & Andersen, A. H. (2006). Stimulated activity of human topoisomerase IIα and IIβ on RNA containing substrates. Journal of Biological Chemistry, 274, 22839-22846.

Wang, Y., Thyssen, A., Westergaard, O. & Andersen, A. H. (2000). Position-specific effect of ribonucleotides on the cleavage activity of human topoisomerase II. Nucleic Acids Research, 28(24), 4815-21.