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Department of Molecular Biology and Genetics

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Peer-reviewed publications at MBG - 2025

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Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ingvartsen, K. L., Ferris, C. P., Hostens, M., Crowe, M. A. & GplusE Consortium (2021). Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation. Journal of Dairy Science, 104(3), 3596-3616. https://doi.org/10.3168/jds.2020-19165

Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ferris, C. P., Hostens, M., Crowe, M. A. & GplusE Consortium (2021). Corrigendum to "Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation" (J. Dairy Sci. 104: 3596-3616). Journal of Dairy Science, 104(5), 6327. https://doi.org/10.3168/jds.2021-104-5-6327

Wathes, D. C., Becker, F., Buggiotti, L., Crowe, M. A., Ferris, C. P., Foldager, L., Grelet, C., Hostens, M., Ingvartsen, K. L., Marchitelli, C., Salavati, M., Signorelli, F., Takeda, H., Tang, L., Cheng, Z. & GplusE Consortium (2021). Associations between circulating IGF-1 concentrations, disease status and the leukocyte transcriptome in early lactation dairy cows. Ruminants, 1(2), 147-177. https://doi.org/10.3390/ruminants1020012

Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R. ... Stadler, P. F. (2007). Structured RNAs in the ENCODE selected regions of the human genome. Genome Research, 17(6), 852-64. https://doi.org/10.1101/gr.5650707

the iPSYCH-Broad autism group & the 23andMe Research Team (2018). Genome-wide analyses of self-reported empathy: Correlations with autism, schizophrenia, and anorexia nervosa. Translational Psychiatry, 8(1), Article 35. https://doi.org/10.1038/s41398-017-0082-6

Warrier, V., Toro, R., Won, H., Leblond, C. S., Cliquet, F., Delorme, R., De Witte, W., Bralten, J., Chakrabarti, B., Børglum, A. D., Grove, J., Poelmans, G., Hinds, D. A., Bourgeron, T. & Baron-Cohen, S. (2019). Social and non-social autism symptoms and trait domains are genetically dissociable. Communications Biology, 2(1), Article 328. https://doi.org/10.1038/s42003-019-0558-4

Warrier, V., Zhang, X., Reed, P., Havdahl, A., Moore, T. M., Cliquet, F., Leblond, C. S., Rolland, T., Rosengren, A., Rowitch, D. H., Hurles, M. E., Geschwind, D. H., Børglum, A. D., Robinson, E. B., Grove, J., Martin, H. C., Bourgeron, T., Baron-Cohen, S., EU-AIMS LEAP ... Spectrum 10K and APEX Consortia (2022). Genetic correlates of phenotypic heterogeneity in autism. Nature Genetics, 54(9), 1293-1304. https://doi.org/10.1038/s41588-022-01072-5

Warnet, X. L., Bakke Krog, H., Sevillano-Quispe, O. G., Poulsen, H. & Kjaergaard, M. (2021). The C-terminal domains of the NMDA receptor: How intrinsically disordered tails affect signalling, plasticity and disease. European Journal of Neuroscience, 54(8), 6713-6739. https://doi.org/10.1111/ejn.14842

Warncke, S. R. & Knudsen, C. R. (2022). Detection methods targeting the positive- and negative-sense RNA transcripts from plus-stranded RNA viruses. APMIS, 130(5), 284-292. https://doi.org/10.1111/apm.13202

Wang, Y., Knudsen, B. R., Bjergbæk, L., Westergaard, O. & Andersen, A. H. (2006). Stimulated activity of human topoisomerase IIα and IIβ on RNA containing substrates. Journal of Biological Chemistry, 274, 22839-22846.

Wang, Y., Thyssen, A., Westergaard, O. & Andersen, A. H. (2000). Position-specific effect of ribonucleotides on the cleavage activity of human topoisomerase II. Nucleic Acids Research, 28(24), 4815-21.

Wang, J., Jensen, U. B., Jensen, G. V., Shipovskov, S., Balakrishnan, V. S., Otzen, D., Pedersen, J. S., Besenbacher, F. & Sutherland, D. S. (2011). Soft Interactions at Nanoparticles Alter Protein Function and Conformation in a Size Dependent Manner. Nano Letters, 11(11), 4985-4991. https://doi.org/10.1021/nl202940k

Wang, W.-Q., Cheng, H.-Y., Møller, I. M. & Song, S.-Q. (2012). The role of recovery of mitochondrial structure and function in desiccation tolerance of pea seeds. Physiologia Plantarum, 144(1), 20-34. https://doi.org/10.1111/j.1399-3054.2011.01518.x

Wang, W.-Q., Møller, I. M. & Song, S.-Q. (2012). Proteomic analysis of embryonic axis of Pisum sativum seeds during germination and identification of proteins associated with loss of desiccation tolerance. Journal of Proteomics, 77, 68-86. https://doi.org/10.1016/j.jprot.2012.07.005

Wang, H., Andersen, K. K., Vad, B. S. & Otzen, D. E. (2013). OmpA can form folded and unfolded oligomers. B B A - Proteins and Proteomics, 1834(1), 127-136. https://doi.org/10.1016/j.bbapap.2012.09.002

Wang, H., Andersen, K. K., Sehgal, P., Hagedorn, J., Westh, P., Borch, K. & Otzen, D. E. (2013). pH regulation of the kinetic stability of the lipase from Thermomyces lanuginosus. Biochemistry, 52(1), 264-276. https://doi.org/10.1021/bi301258e

Wang, H., Hagedorn, J., Svendsen, A., Borch, K. & Otzen, D. (2013). Variant of the Thermomyces lanuginosus lipase with improved kinetic stability: a candidate for enzyme replacement therapy. Biophysical Chemistry, 172, 43-52. https://doi.org/10.1016/j.bpc.2012.12.003

Wang, W.-Q., Ye, J.-Q., Rogowska-Wrzesinska, A., Wojdyla, K. I., Jensen, O. N., Møller, I. M. & Song, S.-Q. (2014). Proteomic Comparison between Maturation Drying and Prematurely Imposed Drying of Zea mays Seeds Reveals a Potential Role of Maturation Drying in Preparing Proteins for Seed Germination, Seedling Vigor, and Pathogen Resistance. Journal of Proteome Research, 13(2), 606-626. https://doi.org/10.1021/pr4007574

Wang, W.-Q., Liu, S.-J., Song, S.-Q. & Møller, I. M. (2015). Proteomics of seed development, desiccation tolerance, germination and vigor. Plant Physiology and Biochemistry, 86, 1-15. https://doi.org/10.1016/j.plaphy.2014.11.003

Wang, K., Sitsel, O., Meloni, G., Autzen, H. E., Andersson, M., Klymchuk, T., Nielsen, A. M., Rees, D. C., Nissen, P. & Gourdon, P. (2014). Structure and mechanism of Zn²⁺-transporting P-type ATPases. Nature, 514(7523), 518-522. https://doi.org/10.1038/nature13618

Wang, Z., D'Annessa, I., Tesauro, C., Croce, S., Ottaviani, A., Fiorani, P. & Desideri, A. (2015). Mutation of Gly717Phe in human topoisomerase 1B has an effect on enzymatic function, reactivity to the camptothecin anticancer drug and on the linker domain orientation. BBA Proteins and Proteomics, 1854(8), 860-868. https://doi.org/10.1016/j.bbapap.2015.04.017

Wang, W.-Q., Song, B.-Y., Deng, Z.-J., Wang, Y., Liu, S.-J., Møller, I. M. & Song, S.-Q. (2015). Proteomic analysis of lettuce seed germination and thermoinhibition by sampling of individual seeds at germination and removal of storage proteins by polyethylene glycol fractionation. Plant Physiology, 167(4), 1332-1350. https://doi.org/10.1104/pp.15.00045

Wang, J., Liu, J., Thomsen, J., Selnihhin, D., Hede, M. S., Kirsebom, F. C. M., Franch, O., Fjelstrup, S., Stougaard, M., Ho, Y.-P., Pedersen, F. S. & Knudsen, B. R. (2017). Novel DNA sensor system for highly sensitive and quantitative retrovirus detection using virus encoded integrase as a biomarker. Nanoscale, 9(1), 440-448. https://doi.org/10.1039/c6nr07428f

Wang, Z., Ouyang, H., Tesauro, C., Ottaviani, A., He, Y., Fiorani, P., Xie, H., Desideri, A. & Fu, Z. (2018). Real-time analysis of cleavage and religation activity of human topoisomerase 1 based on ternary fluorescence resonance energy transfer DNA substrate. Archives of Biochemistry and Biophysics, 643, 1-6. https://doi.org/10.1016/j.abb.2018.02.006

Wang, W. Q., Wang, Y., Zhang, Q., Møller, I. M. & Song, S. Q. (2018). Changes in the mitochondrial proteome of developing maize seed embryos. Physiologia Plantarum, 163(4), 552-572. https://doi.org/10.1111/ppl.12725

Wang, W. Q., Jensen, O. N., Møller, I. M., Hebelstrup, K. H. & Rogowska-Wrzesinska, A. (2018). Evaluation of sample preparation methods for mass spectrometry-based proteomic analysis of barley leaves. Plant Methods, 14(1), Article 72. https://doi.org/10.1186/s13007-018-0341-4

Wang, Q., Taschner, M., Ganzinger, K. A., Kelley, C., Villasenor, A., Heymann, M., Schwille, P., Lorentzen, E. & Mizuno, N. (2018). Membrane association and remodeling by intraflagellar transport protein IFT172. Nature Communications, 9(1), Article 4684. https://doi.org/10.1038/s41467-018-07037-9

Wang, J., Andersen, S. U. & Ratet, P. (2018). Editorial: Molecular and cellular mechanisms of the legume-rhizobia symbiosis. Frontiers in Plant Science, 9, Article 1839. https://doi.org/10.3389/fpls.2018.01839

Wang, Y., Holleufer, A., Gad, H. H. & Hartmann, R. (2020). Length dependent activation of OAS proteins by dsRNA. Cytokine, 126, Article 154867. https://doi.org/10.1016/j.cyto.2019.154867

Wang, J., Taschner, M., Petriman, N. A., Andersen, M. B., Basquin, J., Bhogaraju, S., Vetter, M., Wachter, S., Lorentzen, A. & Lorentzen, E. (2020). Purification and crystal structure of human ODA16: Implications for ciliary import of outer dynein arms by the intraflagellar transport machinery. Protein Science, 29(6), 1502-1510. https://doi.org/10.1002/pro.3864

Wang, Z., D Annessa, I., Tesauro, C., Ottaviani, A., Soren, B. C., Dasari, J. B., Messina, B., Thareparambil, A. & Fiorani, P. (2019). The human DNA topoisomerase I mutant Gly717Asp: Higher religation rate is not always associated with camptothecin resistance. Archives of Biochemistry and Biophysics, 663, 165-172.

Wang, T., Nielsen, K. L., Frisch, K., Lassen, J. K., Nielsen, C. B., Andersen, C. U., Villesen, P., Andreasen, M. F., Hasselstrøm, J. B. & Johannsen, M. (2022). A Retrospective Metabolomics Analysis of Gamma-Hydroxybutyrate in Humans: New Potential Markers and Changes in Metabolism Related to GHB Consumption. Frontiers in Pharmacology, 13, Article 816376. https://doi.org/10.3389/fphar.2022.816376

Wang, S., Chavez, A. D., Thomas, S., Li, H., Flanders, N. C., Sun, C., Strauss, M. J., Chen, L. X., Markvoort, A. J., Bredas, J. L. & Dichtel, W. R. (2019). Pathway Complexity in the Stacking of Imine-Linked Macrocycles Related to Two-Dimensional Covalent Organic Frameworks. Chemistry of Materials, 31(17), 7104-7111. https://doi.org/10.1021/acs.chemmater.9b03088

Wang, X., Walker, A., Revez, J. A., Ni, G., Adams, M. J., McIntosh, A. M. & Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2023). Polygenic risk prediction: why and when out-of-sample prediction R² can exceed SNP-based heritability. American Journal of Human Genetics, 110(7), 1207-1215. https://doi.org/10.1016/j.ajhg.2023.06.006

Wang, J., Kidmose, R. T., Boegholm, N., Zacharia, N. K., Thomsen, M. B., Christensen, A., Malik, T., Lechtreck, K. & Lorentzen, E. (2025). Integrative in silico and biochemical analyses demonstrate direct Arl3-mediated ODA16 release from the intraflagellar transport machinery. Journal of Biological Chemistry, 301(3), Article 108237. https://doi.org/10.1016/j.jbc.2025.108237

Walther, R., Monge, P., Pedersen, A., Benderoth, A., Pedersen, J., Farzadfard, A., Mandrup, O., Howard, K., Otzen, D. & Zelikin, A. N. (2021). Per-glycosylation of the Surface-Accessible Lysines: One-Pot Aqueous Route to Stabilized Proteins with Native Activity. ChemBioChem, 22(14), 2478-2485. https://doi.org/10.1002/cbic.202100228

Walter, P., Klein, F., Lorentzen, E., Ilchmann, A., Klug, G. & Evguenieva-Hackenberg, E. (2006). Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Microbiol., 62(4), 1076-1089.

Walter, A., Bechsgaard, J., Scavenius, C., Dyrlund, T. S., Sanggaard, K. W., Enghild, J. J. & Bilde, T. (2017). Characterisation of protein families in spider digestive fluids and their role in extra-oral digestion. BMC Genomics, 18, Article 600. https://doi.org/10.1186/s12864-017-3987-9

The Baboon Genome Analysis Consortium (2017). Papio baboon species indicative Alu elements. Genome Biology and Evolution, 9(6), 1788-1796. https://doi.org/10.1093/gbe/evx130

Walker, J. A., Jordan, V. E., Storer, J. M., Steely, C. J., Gonzalez-Quiroga, P., Beckstrom, T. O., Rewerts, L. C., St. Romain, C. P., Rockwell, C. E., Rogers, J., Jolly, C. J., Konkel, M. K., The Baboon Genome Analysis Consortium & Batzer, M. A. (2019). Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry. Mobile DNA, 10(1), Article 46. https://doi.org/10.1186/s13100-019-0187-y

Walia, V., Cuenca, A., Vetter, M., Insinna, C., Perera, S., Lu, Q., Ritt, D. A., Semler, E., Specht, S., Stauffer, J., Morrison, D. K., Lorentzen, E. & Westlake, C. J. (2019). Akt Regulates a Rab11-Effector Switch Required for Ciliogenesis. Developmental Cell, 50(2), 229-246.e7. https://doi.org/10.1016/j.devcel.2019.05.022

Waldvogel, A. M., Feldmeyer, B., Rolshausen, G., Exposito-Alonso, M., Rellstab, C., Kofler, R., Mock, T., Schmid, K., Schmitt, I., Bataillon, T., Savolainen, O., Bergland, A., Flatt, T., Guillaume, F. & Pfenninger, M. (2020). Evolutionary genomics can improve prediction of species’ responses to climate change. Evolution Letters, 4(1), 4-18. https://doi.org/10.1002/evl3.154

Walden, H., Taylor, L. G., Lorentzen, E., Pohl, E., Lilie, H., Schramm, A., Knura, T., Stubbe, K., Tjaden, B. & Hensel, R. (2004). Structure and function of a regulated archaeal triosephosphate isomerase adapted to high temperature. J. Mol. Biol., 342(3), 861-875.

Waight, A. B., Pedersen, B. P., Schlessinger, A., Bonomi, M., Chau, B. H., Roe-Zurz, Z., Risenmay, A. J., Sali, A. & Stroud, R. M. (2013). Structural basis for alternating access of a eukaryotic calcium/proton exchanger. Nature, 499(7456), 107-110. https://doi.org/10.1038/nature12233

Wæhrens, L. N., Rasmussen, J. T., Heegaard, C. W. & Falborg, L. (2007). Preparation and in vitro evaluation of 99mTc-labelled bovine lactadherin as a novel radioligand for apoptosis detection. Journal of Labelled Compounds and Radiopharmaceuticals, 50, 211.

Wæhrens, L. N., Heegaard, C. W., Gilbert, G. E. & Rasmussen, J. T. (2009). Bovine Lactadherin as a Calcium-independent Imaging Agent of Phosphatidylserine Expressed on the Surface of Apoptotic HeLa Cells. Journal of Histochemistry and Cytochemistry, 57(10), 907-914.

Wack, A., Terczynska-Dyla, E. & Hartmann, R. (2015). Guarding the frontiers: the biology of type III interferons. Nature Immunology, 16(8), 802-809. https://doi.org/10.1038/ni.3212

Wachter, S., Jung, J., Shafiq, S., Basquin, J., Fort, C., Bastin, P. & Lorentzen, E. (2019). Binding of IFT22 to the intraflagellar transport complex is essential for flagellum assembly. EMBO Journal, 38(9), Article e101251. https://doi.org/10.15252/embj.2018101251

W. Abdallah, M., Larsen, N., Grove, J., Bonefeld-Jørgensen, E. C., Nørgaard-Pedersen, B., M. Hougaard , D. & L. Mortensen, E. (2013). Neonatal chemokine levels and risk of autism spectrum disorders: Findings from a Danish historic birth cohort follow-up study. Cytokine, 61(2), 370–376. https://doi.org/10.1016/j.cyto.2012.11.015

W. Abdallah, M., L. Mortensen, E., Greaves-Lord, K., Larsen, N., Bonefeld-Jørgensen, E. C., Nørgaard-Pedersen, B., M. Hougaard, D. & Grove, J. (2013). Neonatal Levels of Neurotrophic Factors and Risk of Autism Spectrum Disorders. Acta Psychiatrica Scandinavica, 128(1). https://doi.org/10.1111/acps.12020

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