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Larsen, K. E. (Producer), Heide-Jørgensen, M. P. (Producer) & Majgren, B. F. (Producer). (2021). (2021) Balaena mysticetus Nei-like DNA glycosylase 1 (NEIL1) mRNA, complete cds. GenBank Accession No. MZ055365. Dataset

Larsen, K. E. (Producer), Heide-Jorgenssen, M. P. (Producer), Majgren, B. F. (Producer) & Jørgensen, H. (Producer). (2021). ) Balaena mysticetus Nei-like DNA glycosylase 2 (NEIL2) mRNA, complete cds. GenBank Accession No. MZ055369.. Dataset

Shrestha, A., Zhong, S., Therrien, J., Huebert, T., Sato, S., Mun, T., Andersen, S. U., Stougaard, J., Lepage, A., Niebel, A., Ross, L. & Szczyglowski, K. (2021). Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling. New Phytologist, 229(3), 1535-1552. https://doi.org/10.1111/nph.16950

Jakobsen, A-K., Keller-Socin, J. G., Gonzales, M., Martín-Encinas, E., Palacios, F., Alonso, C., Knudsen, B. R. & Stougaard, M. (2021). A Dual-Sensor-Based Screening System for In Vitro Selection of TDP1 Inhibitors. Sensors, 21(14), [4832]. https://doi.org/10.3390/s21144832

Prabakaran, T., Troldborg, A., Kumpunya, S., Alee, I., Marinković, E., Windross, S. J., Nandakumar, R., Narita, R., Zhang, B-C., Carstensen, M., Vejvisithsakul, P., Marqvorsen, M. H. S., Iversen, M. B., Holm, C. K., Østergaard, L. J., Pedersen, F. S., Pisitkun, T., Behrendt, R., Pisitkun, P. & Paludan, S. R. (2021). A STING antagonist modulating the interaction with STIM1 blocks ER-to-Golgi trafficking and inhibits lupus pathology. EBioMedicine, 66, [103314]. https://doi.org/10.1016/j.ebiom.2021.103314

Otzen, D. E., Morshedi, D., Mohammad-Beigi, H. & Aliakbari, F. (2021). A Triple Role for a Bilayer: Using Nanoliposomes to Cross and Protect Cellular Membranes. Journal of Membrane Biology, 254(1), 29-39. https://doi.org/10.1007/s00232-020-00159-6

Quidwai, T., Wang, J., Hall, E. A., Petriman, N. A., Leng, W., Kiesel, P., Wells, J. N., Murphy, L. C., Keighren, M. A., A Marsh, J., Lorentzen, E., Pigino, G. & Mill, P. (2021). A WDR35-dependent coat protein complex transports ciliary membrane cargo vesicles to cilia. eLife, 10, [e69786]. https://doi.org/10.7554/eLife.69786

Rasmussen, H. Ø., Otzen, D. E. & Pedersen, J. S. (2021). A multimethod approach for analyzing FapC fibrillation and determining mass per length. Biophysical Journal, 120(11), 2262-2275. https://doi.org/10.1016/j.bpj.2021.03.031

Focht, D., Neumann, C., Lyons, J., Eguskiza Bilbao, A., Blunck, R., Malinauskaite, L., Schwarz, I. O., Javitch, J. A., Quick, M. & Nissen, P. (2021). A non-helical region in transmembrane helix 6 of hydrophobic amino acid transporter MhsT mediates substrate recognition. EMBO Journal, 40(1), [e105164]. https://doi.org/10.15252/embj.2020105164

Nakamoto, C., Goto, Y., Tomizawa, Y., Fukata, Y., Fukata, M., Harpsøe, K., Gloriam, D. E., Aoki, K. & Takeuchi, T. (2021). A novel red fluorescence dopamine biosensor selectively detects dopamine in the presence of norepinephrine in vitro. Molecular Brain, 14(1), [173]. https://doi.org/10.1186/s13041-021-00882-8

Choong, F. X., Huzell, S., Rosenberg, M., Eckert, J. A., Nagaraj, M., Zhang, T., Melican, K., Otzen, D. E. & Richter-Dahlfors, A. (2021). A semi high-throughput method for real-time monitoring of curli producing Salmonella biofilms on air-solid interfaces. Biofilm, 3, [100060]. https://doi.org/10.1016/j.bioflm.2021.100060

Valero, J., Civit, L., Dupont, D. M., Selnihhin, D., Reinert, L. S., Idorn, M., Israels, B. A., Bednarz, A. M., Bus, C., Asbach, B., Peterhoff, D., Pedersen, F. S., Birkedal, V., Wagner, R., Paludan, S. R. & Kjems, J. (2021). A serum-stable RNA aptamer specific for SARS-CoV-2 neutralizes viral entry. Proceedings of the National Academy of Sciences of the United States of America, 118(50), [e2112942118]. https://doi.org/10.1073/pnas.2112942118

Bayraktar, G., Højgaard, K., Nijssen, L. & Takeuchi, T. (2021). A within-subject experimental design using an object location task in rats. Journal of Visualized Experiments, 2021(171), [e62458]. https://doi.org/10.3791/62458

Lykke-Andersen, S., Rouvière, J. O. & Jensen, T. H. (2021). ARS2/SRRT: At the nexus of RNA polymerase II transcription, transcript maturation and quality control. Biochemical Society Transactions, 49(3), 1325-1336. https://doi.org/10.1042/BST20201008

Zielke, S., Kardo, S., Zein, L., Mari, M., Covarrubias-Pinto, A., Kinzler, M. N., Meyer, N., Stolz, A., Fulda, S., Reggiori, F., Kögel, D. & van Wijk, S. (2021). ATF4 links ER stress with reticulophagy in glioblastoma cells. Autophagy, 17(9), 2432-2448. https://doi.org/10.1080/15548627.2020.1827780

Lamy, A., Macarini-Bruzaferro, E., Dieudonné, T., Perálvarez-Marín, A., Lenoir, G., Montigny, C., le Maire, M. & Vázquez-Ibar, J. L. (2021). ATP2, The essential P4-ATPase of malaria parasites, catalyzes lipid-stimulated ATP hydrolysis in complex with a Cdc50 β-subunit. Emerging Microbes and Infections, 10(1), 132-147. https://doi.org/10.1080/22221751.2020.1870413

Rahimi Aqdam, S., Otzen, D. E., Mahmoodi, N. M. & Morshedi, D. (2021). Adsorption of azo dyes by a novel bio-nanocomposite based on whey protein nanofibrils and nano-clay: Equilibrium isotherm and kinetic modeling. Journal of Colloid and Interface Science, 602, 490-503. https://doi.org/10.1016/j.jcis.2021.05.174

Serpell, L. C., Radford, S. E. & Otzen, D. (2021). AlphaFold: A Special Issue and a Special time for Protein Science. Journal of Molecular Biology, 433(20), [167231]. https://doi.org/10.1016/j.jmb.2021.167231

Olsen, D., Wellner, N., Ollendorff, M. K., de Jong, I. E. M., Sotty, F., Didriksen, M., Glerup, S. & Nykjær, A. (2021). Altered dopaminergic firing pattern and novelty response underlie ADHD-like behavior of SorCS2-deficient mice. Translational Psychiatry, 11, [74]. https://doi.org/10.1038/s41398-021-01199-9

Xu, J., Sagnelli, D., Faisal, M., Perzon, A., Taresco, V., Mais, M., Giosafatto, C. V. L., Hebelstrup, K. H., Ulvskov, P., Jørgensen, B., Chen, L., Howdle, S. M. & Blennow, A. (2021). Amylose/cellulose nanofiber composites for all-natural, fully biodegradable and flexible bioplastics. Carbohydrate Polymers, 253, [117277]. https://doi.org/10.1016/j.carbpol.2020.117277

Del Amo-Maestro, L., Sagar, A., Pompach, P., Goulas, T., Scavenius, C., Ferrero, D. S., Castrillo-Briceño, M., Taulés, M., Enghild, J. J., Bernadó, P. & Gomis-Rüth, F. X. (2021). An Integrative Structural Biology Analysis of Von Willebrand Factor Binding and Processing by ADAMTS-13 in Solution. Journal of Molecular Biology, 433(13), [166954]. https://doi.org/10.1016/j.jmb.2021.166954

Dubey, V., Stokes, D. L., Pedersen, B. P. & Khandelia, H. (2021). An Intracellular Pathway Controlled by the N-terminus of the Pump Subunit Inhibits the Bacterial KdpFABC Ion Pump in High K⁺ Conditions. Journal of Molecular Biology, 433(15), [167008]. https://doi.org/10.1016/j.jmb.2021.167008

Vogt, S., Bobbili, M. R., Stadlmayr, G., Stadlbauer, K., Kjems, J., Rüker, F., Grillari, J. & Wozniak-Knopp, G. (2021). An engineered CD81-based combinatorial library for selecting recombinant binders to cell surface proteins: Laminin binding CD81 enhances cellular uptake of extracellular vesicles. Journal of Extracellular Vesicles, 10(11), [e12139]. https://doi.org/10.1002/jev2.12139

Momeni, J., Parejo, M., Nielsen, R. O., Langa, J., Montes, I., Papoutsis, L., Farajzadeh, L., Bendixen, C., Cauia, E., Charrière, J-D., Coffey, M. F., Costa, C., Dall'Olio, R., De la Rúa, P., Drazic, M. M., Filipi, J., Galea, T., Golubovski, M., Gregorc, A. ... Estonba, A. (2021). Authoritative subspecies diagnosis tool for European honey bees based on ancestry informative SNPs. BMC Genomics, 22, [101]. https://doi.org/10.1186/s12864-021-07379-7

Klionsky, D. J., Petroni, G., Amaravadi, R. K., Baehrecke, E. H., Ballabio, A., Boya, P., Bravo-San Pedro, J. M., Cadwell, K., Cecconi, F., Choi, A. M. K., Choi, M. E., Chu, C. T., Codogno, P., Colombo, M. I., Cuervo, A. M., Deretic, V., Dikic, I., Elazar, Z., Eskelinen, E-L. ... Pietrocola, F. (2021). Autophagy in major human diseases. The EMBO Journal, 40(19), e108863. https://doi.org/10.15252/embj.2021108863

Green, K., Wittenborn, T. R., Fahlquist-Hagert, C., Terczynska-Dyla, E., van Campen, N., Jensen, L., Reinert, L., Hartmann, R., Paludan, S. R. & Degn, S. E. (2021). B Cell Intrinsic STING Signaling Is Not Required for Autoreactive Germinal Center Participation. Frontiers in Immunology, 12, [782558]. https://doi.org/10.3389/fimmu.2021.782558

Larsen, K. E. (Producer), Heide-Jorgenssen, M. P. (Producer) & Majgren, B. F. (Producer). (2021). Balaena mysticetus Nei-like DNA glycosylase 1 (NEIL1) mRNA, complete cds. GenBank Accession No. MZ055366. Dataset

Larsen, K. E. (Producer). (2021). Balaena mysticetus clone 1 CAMP responsive element binding protein 1 (CREB1) mRNA, partial cds. GenBank Accession No. MW147363. Dataset

Larsen, K. E. (Producer) & Heide-Jorgenssen, M. P. (Producer). (2021). Balaena mysticetus cytoglobin (CYGB) mRNA, complete cds. GenBank Accession No. MW280859. Dataset

Krintel, C., Dorosz, J., Larsen, A. H., Thorsen, T. S., Venskutonytė, R., Mirza, O., Gajhede, M., Boesen, T. & Kastrup, J. S. (2021). Binding of a negative allosteric modulator and competitive antagonist can occur simultaneously at the ionotropic glutamate receptor GluA2. FEBS Journal, 288(3), 995-1007. https://doi.org/10.1111/febs.15455

Noji, M., Samejima, T., Yamaguchi, K., So, M., Yuzu, K., Chatani, E., Akazawa-Ogawa, Y., Hagihara, Y., Kawata, Y., Ikenaka, K., Mochizuki, H., Kardos, J., Otzen, D. E., Bellotti, V., Buchner, J. & Goto, Y. (2021). Breakdown of supersaturation barrier links protein folding to amyloid formation. Communications Biology, 4(1), [120]. https://doi.org/10.1038/s42003-020-01641-6

Amodeo, G. F., Lee, B. Y., Krilyuk, N., Filice, C. T., Valyuk, D., Otzen, D. E., Noskov, S., Leonenko, Z. & Pavlov, E. V. (2021). C subunit of the ATP synthase is an amyloidogenic calcium dependent channel-forming peptide with possible implications in mitochondrial permeability transition. Scientific Reports, 11(1), [8744]. https://doi.org/10.1038/s41598-021-88157-z

Lassen, T. R., Just, J., Hjortbak, M. V., Jespersen, N. R., Stenz, K. T., Gu, T., Yan, Y., Su, J., Hansen, J., Bæk, R., Jørgensen, M. M., Nyengaard, J. R., Kristiansen, S. B., Drasbek, K. R., Kjems, J. & Bøtker, H. E. (2021). Cardioprotection by remote ischemic conditioning is transferable by plasma and mediated by extracellular vesicles. Basic Research in Cardiology, 116(1), [16]. https://doi.org/10.1007/s00395-021-00856-w

Compte, M., Harwood, S. L., Martínez-Torrecuadrada, J., Perez-Chacon, G., González-García, P., Tapia-Galisteo, A., Van Bergen en Henegouwen, P. M. P., Sánchez, A., Fabregat, I., Sanz, L., Zapata, J. M. & Alvarez-Vallina, L. (2021). Case Report: An EGFR-Targeted 4-1BB-agonistic Trimerbody Does Not Induce Hepatotoxicity in Transgenic Mice With Liver Expression of Human EGFR. Frontiers in Immunology, 11, [614363]. https://doi.org/10.3389/fimmu.2020.614363

Morales, A. C., Rice, A. M., Ho, A. T., Mordstein, C., Mühlhausen, S., Watson, S., Cano, L., Young, B., Kudla, G. & Hurst, L. D. (2021). Causes and Consequences of Purifying Selection on SARS-CoV-2. Genome Biology and Evolution, 13(10), [evab196]. https://doi.org/10.1093/gbe/evab196

Moldovan, L. I., Tsoi, L. C., Ranjitha, U., Hager, H., Weidinger, S., Gudjonsson, J. E., Kjems, J. & Kristensen, L. S. (2021). Characterization of Circular RNA Transcriptomes in Psoriasis and Atopic Dermatitis Reveals Disease-specific Expression Profiles. Experimental Dermatology, 30(8), 1187-1196. https://doi.org/10.1111/exd.14227

Mendoza-Suárez, M., Andersen, S. U., Poole, P. S. & Sánchez-Cañizares, C. (2021). Competition, Nodule Occupancy, and Persistence of Inoculant Strains: Key Factors in the Rhizobium-Legume Symbioses. Frontiers in Plant Science, 12, [690567]. https://doi.org/10.3389/fpls.2021.690567

Jensen, R. K., Bajic, G., Sen, M., Springer, T. A., Vorup-Jensen, T. & Andersen, G. R. (2021). Complement receptor 3 forms a compact high-affinity complex with iC3b. Journal of Immunology, 206(12), 3032-3042. https://doi.org/10.4049/jimmunol.2001208

Frank, M., Kaulfürst-Soboll, H., Fischer, K. & von Schaewen, A. (2021). Complex-Type N-Glycans Influence the Root Hair Landscape of Arabidopsis Seedlings by Altering the Auxin Output. Frontiers in Plant Science, 12, [635714]. https://doi.org/10.3389/fpls.2021.635714

Larsen, K. & Heide-Jørgensen, M. P. (2021). Conservation of A-to-I RNA editing in bowhead whale and pig. PLOS ONE, 16(12 ), [e0260081]. https://doi.org/10.1371/journal.pone.0260081

Fujito, S., Akyol, T. Y., Mukae, T., Wako, T., Yamashita, K. I., Tsukazaki, H., Hirakawa, H., Tanaka, K., Mine, Y., Sato, S. & Shigyo, M. (2021). Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L. BMC Genomics, 22(1), [481]. https://doi.org/10.1186/s12864-021-07803-y

Harwood, S. L., Nielsen, N. S., Jensen, K. T., Nielsen, P. K., Thøgersen, I. B. & Enghild, J. J. (2021). Correction: α2-Macroglobulin-like protein 1 can conjugate and inhibit proteases through their hydroxyl groups, because of an enhanced reactivity of its thiol ester (The Journal of biological chemistry (2020) 295 49 (16732-16742) PII: S0021-9258(20)00204-5). The Journal of Biological Chemistry, 296, 100208. https://doi.org/10.1016/j.jbc.2020.100208

Pennemann, F. L., Mussabekova, A., Urban, C., Stukalov, A., Andersen, L. L., Grass, V., Lavacca, T. M., Holze, C., Oubraham, L., Benamrouche, Y., Girardi, E., Boulos, R. E., Hartmann, R., Superti-Furga, G., Habjan, M., Imler, J. L., Meignin, C. & Pichlmair, A. (2021). Cross-species analysis of viral nucleic acid interacting proteins identifies TAOKs as innate immune regulators. Nature Communications, 12(1), [7009]. https://doi.org/10.1038/s41467-021-27192-w

Yan, Y., Gu, T., Christensen, S. D. K., Su, J., Lassen, T. R., Hjortbak, M. V., Lo, I., Venø, S. T., Tóth, A. E., Song, P., Nielsen, M. S., Bøtker, H. E., Blagoev, B., Drasbek, K. R. & Kjems, J. (2021). Cyclic hypoxia conditioning alters the content of myoblast-derived extracellular vesicles and enhances their cell-protective functions. Biomedicines, 9(9), [1211]. https://doi.org/10.3390/biomedicines9091211

Otzen, D. E., Pedersen, J. N., Somavarapu, A. K., Clement, A., Ji, M., Petersen, E. H., Pedersen, J. S., Urban, S. & Schafer, N. P. (2021). Cys-labelling kinetics of membrane protein GlpG: a role for specific SDS binding and micelle changes? Biophysical Journal, 120(18), 4115-4128. https://doi.org/10.1016/j.bpj.2021.08.001

Lemcke, R., Sjökvist, E., Visentin, S., Kamble, M., James, E. K., Hjørtshøj, R., Wright, K. M., Avrova, A., Newton, A. C., Havis, N. D., Radutoiu, S. & Lyngkjær, M. F. (2021). Deciphering Molecular Host-Pathogen Interactions During Ramularia Collo-Cygni Infection on Barley. Frontiers in Plant Science, 12, [747661]. https://doi.org/10.3389/fpls.2021.747661

Silberberg, J. M., Corey, R. A., Hielkema, L., Stock, C., Stansfeld, P. J., Paulino, C. & Hänelt, I. (2021). Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC. Nature Communications, 12(1), [5098]. https://doi.org/10.1038/s41467-021-25242-x

Young, J. P. W., Moeskjær, S., Afonin, A., Rahi, P., Maluk, M., James, E. K., Cavassim, M. I. A., Rashid, M. H. O., Aserse, A. A., Perry, B. J., Wang, E. T., Velázquez, E., Andronov, E. E., Tampakaki, A., Félix, J. D. F., González, R. R., Youseif, S. H., Lepetit, M., Boivin, S. ... Tian, C. F. (2021). Defining the rhizobium leguminosarum species complex. Genes, 12(1), [111]. https://doi.org/10.3390/genes12010111

Harwood, S. L., Nielsen, N. S., Diep, K., Jensen, K. T., Nielsen, P. K., Yamamoto, K. & Enghild, J. J. (2021). Development of selective protease inhibitors via engineering of the bait region of human α2-macroglobulin. The Journal of Biological Chemistry, 297(1), [100879]. https://doi.org/10.1016/j.jbc.2021.100879

Bertelsen, A. B., Hackney, C. M., Bayer, C. N., Kjelgaard, L. D., Rennig, M., Christensen, B. S., Sorensen, E. S., Safavi-Hemami, H., Wulff, T., Ellgaard, L. & Norholm, M. H. H. (2021). DisCoTune: versatile auxiliary plasmids for the production of disulphide-containing proteins and peptides in the E. coli T7 system. Microbial Biotechnology, 14(6), 2566-2580. https://doi.org/10.1111/1751-7915.13895

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Revised 18.01.2022 -

Lisbeth Heilesen

Department of Molecular Biology and Genetics

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