Peer-reviewed articles

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Latest peer-reviewed publications at MBG

Displaying results 451 to 192 out of 192

Peer-reviewed publications at MBG - all years

Chrenková, A., Bisiak, F. & Brodersen, D. E. (2024). Breaking bad nucleotides: understanding the regulatory mechanisms of bacterial small alarmone hydrolases. Trends in Microbiology, 32(8), 769-780. https://doi.org/10.1016/j.tim.2023.12.011

Digel, L., Mierzwa, M., Bonné, R., Zieger, S. E., Pavel, I. A., Ferapontova, E., Koren, K., Boesen, T., Harnisch, F., Marshall, I. P. G., Nielsen, L. P. & Kuhn, A. (2024). Cable Bacteria Skeletons as Catalytically Active Electrodes. Angewandte Chemie - International Edition, 63(6), Article e202312647. https://doi.org/10.1002/anie.202312647

Pirhaghi, M., Mamashli, F., Moosavi-Movahedi, F., Arghavani, P., Amiri, A., Davaeil, B., Mohammad-Zaheri, M., Mousavi-Jarrahi, Z., Sharma, D., Langel, Ü., Otzen, D. E. & Saboury, A. A. (2024). Cell-Penetrating Peptides: Promising Therapeutics and Drug-Delivery Systems for Neurodegenerative Diseases. Molecular Pharmaceutics, 21(5), 2097-2117. https://doi.org/10.1021/acs.molpharmaceut.3c01167

Nielsen, I. H., Rovsing, A. B., Janns, J. H., Thomsen, E. A., Ruzo, A., Bøggild, A., Nedergaard, F., Møller, C. T., Boesen, T., Degn, S. E., Shah, J. V. & Mikkelsen, J. G. (2024). Cell-targeted gene modification by delivery of CRISPR-Cas9 ribonucleoprotein complexes in pseudotyped lentivirus-derived nanoparticles. Molecular Therapy Nucleic Acids, 35(4), Article 102318. https://doi.org/10.1016/j.omtn.2024.102318

Taleski, M., Jin, M., Chapman, K., Taylor, K., Winning, C., Frank, M., Imin, N. & Djordjevic, M. A. (2024). CEP hormones at the nexus of nutrient acquisition and allocation, root development, and plant-microbe interactions. Journal of Experimental Botany, 75(2), 538-552. https://doi.org/10.1093/jxb/erad444

Tamburini, P., Pedersen, D. V., Devore, D., Cone, J., Patel, R., Hunter, T., Sun, F., Andersen, G. R. & Hunter, J. (2024). Characterization of the bispecific VHH antibody tarperprumig (ALXN1820) specific for properdin and designed for low-volume administration. mAbs, 16(1), Article 2415060. https://doi.org/10.1080/19420862.2024.2415060

Dodd, R. J., Blundell, C. D., Sattelle, B. M., Enghild, J. J., Milner, C. M. & Day, A. J. (2024). Chemical modification of hyaluronan oligosaccharides differentially modulates hyaluronan–hyaladherin interactions. The Journal of Biological Chemistry, 300(9), Article 107668. https://doi.org/10.1016/j.jbc.2024.107668

Andersen, D. G., Pedersen, A. B., Jørgensen, M. H., Montasell, M. C., Søgaard, A. B., Chen, G., Schroeder, A., Andersen, G. R. & Zelikin, A. N. (2024). Chemical Zymogens and Transmembrane Activation of Transcription in Synthetic Cells. Advanced Materials, 36(6), Article 2309385. https://doi.org/10.1002/adma.202309385

Okholm, T. L. H., Kamstrup, A. B., Nielsen, M. M., Hollensen, A. K., Graversgaard, M. L., Sørensen, M. H., Kristensen, L. S., Vang, S., Park, S. S., Yeo, E., Dyrskjøt, L., Kjems, J., Pedersen, J. S. & Damgaard, C. K. (2024). circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA. eLife, 13, Article RP91783. https://doi.org/10.7554/eLife.91783

Rybiczka-Tešulov, M., Garritsen, O., Venø, M. T., Wieg, L., Dijk, R. V., Rahimi, K., Gomes-Duarte, A., Wit, M. D., van de Haar, L. L., Michels, L., van Kronenburg, N. C. H., van der Meer, C., Kjems, J., Vangoor, V. R. & Pasterkamp, R. J. (2024). Circular RNAs regulate neuron size and migration of midbrain dopamine neurons during development. Nature Communications, 15(1), Article 6773. https://doi.org/10.1038/s41467-024-51041-1

Scoyni, F., Sitnikova, V., Giudice, L., Korhonen, P., Trevisan, D. M., Hernandez de Sande, A., Gomez-Budia, M., Giniatullina, R., Ugidos, I. F., Dhungana, H., Pistono, C., Korvenlaita, N., Välimäki, N. N., Kangas, S. M., Hiltunen, A. E., Gribchenko, E., Kaikkonen-Määttä, M. U., Koistinaho, J., Ylä-Herttuala, S. ... Malm, T. (2024). ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling. Cell Reports, 43(3), Article 113862. https://doi.org/10.1016/j.celrep.2024.113862

Thodberg, K., Foldager, L., Schrøder-Petersen, D. L., Kobek-Kjeldager, C., Gould, L. M. & Herskin, M. S. (2024). Clinical condition of cull sows before and after transport to slaughter – Effects of journey duration and a stationary period. Research in Veterinary Science, 168, Article 105124. https://doi.org/10.1016/j.rvsc.2023.105124

Vangoor, V. R., Giuliani, G., de Wit, M., Rangel, C. K., Venø, M. T., Schulte, J. T., Gomes-Duarte, A., Senthilkumar, K., Puhakka, N., Kjems, J., de Graan, P. N. E. & Pasterkamp, R. J. (2024). Compartment-specific small non-coding RNA changes and nucleolar defects in human mesial temporal lobe epilepsy. Acta Neuropathologica, 148(1), Article 61. https://doi.org/10.1007/s00401-024-02817-8

Stiller, J., Feng, S., Chowdhury, A.-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G. ... Zhang, G. (2024). Complexity of avian evolution revealed by family-level genomes. Nature, 629(8013), 851-860. https://doi.org/10.1038/s41586-024-07323-1

Jensen, I. T., Janss, L., Radutoiu, S. & Waagepetersen, R. (2024). Compositionally aware estimation of crosscorrelations for microbiome data. PLoS One, 19(6), Article e0305032. https://doi.org/10.1371/journal.pone.0305032

Salomonsen, C., Martyn, A., Quilbé, J., Björgvinsdóttir, Þ. N., Andersen, S. U., Radutoiu, S. & Glasius, M. (2024). Comprehensive characterization of the rhizosphere metabolome: A novel method for non-targeted analysis of Lotus japonicus root exudates. Rhizosphere, 32, Article 100957. https://doi.org/10.1016/j.rhisph.2024.100957

Liu, J. C. Y., Ackermann, L., Hoffmann, S., Gál, Z., Hendriks, I. A., Jain, C., Morlot, L., Tatham, M. H., McLelland, G. L., Hay, R. T., Nielsen, M. L., Brummelkamp, T., Haahr, P. & Mailand, N. (2024). Concerted SUMO-targeted ubiquitin ligase activities of TOPORS and RNF4 are essential for stress management and cell proliferation. Nature Structural and Molecular Biology, 31(9), 1355-1367. https://doi.org/10.1038/s41594-024-01294-7

Frain, K. M., Dedic, E., Nel, L., Bohush, A., Olesen, E., Thaysen, K., Wüstner, D., Stokes, D. L. & Pedersen, B. P. (2024). Conformational changes in the Niemann-Pick type C1 protein NCR1 drive sterol translocation. Proceedings of the National Academy of Sciences of the United States of America, 121(15), e2315575121. Article e2315575121. https://doi.org/10.1073/pnas.2315575121

Grigoriadis, K., Huebner, A., Bunkum, A., Colliver, E., Frankell, A. M., Hill, M. S., Thol, K., Birkbak, N. J., Swanton, C., Zaccaria, S. & McGranahan, N. (2024). Conipher: a computational framework for scalable phylogenetic reconstruction with error correction. Nature Protocols, 19(1), 159-183. https://doi.org/10.1038/s41596-023-00913-9

Larsen, S. T., Dannersø, J. K., Nielsen, C. J. F., Poulsen, L. R., Palmgren, M. & Nissen, P. (2024). Conserved N-terminal Regulation of the ACA8 Calcium Pump with Two Calmodulin Binding Sites. Journal of Molecular Biology, 436(20), Article 168747. https://doi.org/10.1016/j.jmb.2024.168747

Holst, J. M., Pedersen, M. B., Enemark, M. B., Hansen, M. C., Noerhave, P. R., Plesner, T. L., Frederiksen, H., Moeller, M. B., Hamilton-Dutoit, S. J., Noergaard, P., Mortensen, B. K., Ommen, H. B., Stentoft, J., Tam, W., Ludvigsen, M., Chan, W. C., Birkbak, N. J., Inghirami, G. & d’Amore, F. (2024). Co-shared genomic alterations within tumors from patients with both myeloproliferative neoplasms and lymphoma. Haematologica, 109(12), 4067-4072. https://doi.org/10.3324/haematol.2023.283798

Cai, H., Zhang, B., Ahrenfeldt, J., Joseph, J. V., Riedel, M., Gao, Z., Thomsen, S. K., Christensen, D. S., Bak, R. O., Hager, H., Vendelbo, M. H., Gao, X., Birkbak, N. & Thomsen, M. K. (2024). CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature Communications, 15(1), Article 2088. https://doi.org/10.1038/s41467-024-46370-0, https://doi.org/10.1038/s41467-024-46370-0

Gobet, A., Moissonnier, L. & Chaptal, V. (2024). CryoEM Data Analysis of Membrane Proteins. Practical Considerations on Amphipathic Belts, Ligands, and Variability Analysis. In Bacterial Secretion Systems (Vol. 2715, pp. 471-483). Humana Press. https://doi.org/10.1007/978-1-0716-3445-5_28

McRae, E. K. S., Wan, C. J. K., Kristoffersen, E. L., Hansen, K., Gianni, E., Gallego, I., Curran, J. F., Attwater, J., Holliger, P. & Andersen, E. S. (2024). Cryo-EM structure and functional landscape of an RNA polymerase ribozyme. Proceedings of the National Academy of Sciences (PNAS), 121(3), e2313332121. Article e2313332121. https://doi.org/10.1073/pnas.2313332121

Pedersen, C. N., Yang, F., Ita, S., Xu, Y., Akunuri, R., Trampari, S., Neumann, C. M. T., Desdorf, L. M., Schiøtt, B., Salvino, J. M., Mortensen, O. V., Nissen, P. & Shahsavar, A. (2024). Cryo-EM structure of the dopamine transporter with a novel atypical non-competitive inhibitor bound to the orthosteric site. Journal of Neurochemistry, 168(9), 2043-2055. https://doi.org/10.1111/jnc.16179

Mehmood, S., Thirup, S. S., Ahmed, S., Bashir, N., Saeed, A., Rafiq, M., Saeed, Q., Najam-ul-Haq, M., Khaliq, B., Ibrahim, M., Alonazi, W. B. & Akrem, A. (2024). Crystal structure of Kunitz-type trypsin inhibitor: Entomotoxic effect of native and encapsulated protein targeting gut trypsin of Tribolium castaneum Herbst. Computational and Structural Biotechnology Journal, 23, 3132-3142. https://doi.org/10.1016/j.csbj.2024.07.023

Olsen, W. P., Courtade, G., Peña-Díaz, S., Nagaraj, M., Sønderby, T. V., Mulder, F. A. A., Malle, M. G. & Otzen, D. E. (2024). CsgA gatekeeper residues control nucleation but not stability of functional amyloid. Protein Science, 33(10), Article e5178. https://doi.org/10.1002/pro.5178

Chapman, K., Taleski, M., Frank, M. & Djordjevic, M. A. (2024). C-TERMINALLY ENCODED PEPTIDE (CEP) and cytokinin hormone signaling intersect to promote shallow lateral root angles. Journal of Experimental Botany, 75(2), 631-641. https://doi.org/10.1093/jxb/erad353

Moya-Molina, M., Dorgau, B., Flood, E., Letteboer, S. J. F., Lorentzen, E., Coxhead, J., Smith, G., Roepman, R., Nagaraja Grellscheid, S., Armstrong, L. & Lako, M. (2024). Deciphering the impact of PROM1 alternative splicing on human photoreceptor development and maturation. Cell Death & Disease, 15(10), Article 721. https://doi.org/10.1038/s41419-024-07105-7

Shamsi, W., Heinzelmann, R., Ulrich, S., Kondo, H. & Cornejo, C. (2024). Decoding the RNA virome of the tree parasite Armillaria provides new insights into the viral community of soil-borne fungi. Environmental Microbiology, 26(2), Article e16583. https://doi.org/10.1111/1462-2920.16583

Zhang, X., Malle, M. G., Thomsen, R. P., Sørensen, R. S., Sørensen, E. W., Hatzakis, N. S. & Kjems, J. (2024). Deconvoluting the Effect of Cell-Penetrating Peptides for Enhanced and Controlled Insertion of Large-Scale DNA Nanopores. A C S Applied Materials and Interfaces, 16(15), 18422-18433. https://doi.org/10.1021/acsami.3c18636

Kaur, G. & Rattan, S. (2024). Defining, Re-defining, and Understanding the Brain and Mental Health During Ageing. In G. Kaur & S. I. S. Rattan (Eds.), Brain and Mental Health in Ageing (pp. 3-16). Springer, Cham. https://doi.org/10.1007/978-3-031-68513-2_1

Garg, A., González-Foutel, N. S., Gielnik, M. B. & Kjaergaard, M. (2024). Design of functional intrinsically disordered proteins. Protein Engineering, Design and Selection, 37, Article gzae004. https://doi.org/10.1093/protein/gzae004

Rüegg, A. B., van der Weijden, V. A., de Sousa, J. A., von Meyenn, F., Pausch, H. & Ulbrich, S. E. (2024). Developmental progression continues during embryonic diapause in the roe deer. Communications Biology, 7(1), Article 270. https://doi.org/10.1038/s42003-024-05944-w

Rusbjerg-Weberskov, C. E., Gant, M. S., Chamot-Rooke, J., Nielsen, N. S. & Enghild, J. J. (2024). Development of a top-down MS assay for specific identification of human periostin isoforms. Frontiers in Molecular Biosciences, 11, Article 1399225. https://doi.org/10.3389/fmolb.2024.1399225

Gamaleldin, M., Yu, N. K., Diedrich, J. K., Ma, Y., Wienand, A., McClatchy, D. B., Nykjaer, A., Nabavi, S. & Yates, J. R. (2024). DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity. Journal of Proteome Research, 23(11), 4878-4895. https://doi.org/10.1021/acs.jproteome.4c00180

Sprenger, R. R., Bilgin, M., Ostenfeld, M. S., Bjørnshave, A., Rasmussen, J. T. & Ejsing, C. S. (2024). Dietary intake of a MFGM/EV-rich concentrate promotes accretion of very long odd-chain sphingolipids and increases lipid metabolic turnover at the whole-body level. Food Research International, 190, Article 114601. https://doi.org/10.1016/j.foodres.2024.114601

Palimaru Manhoobi, I., Tramm, T., Redsted, S., Bodilsen, A., Foldager, L. & Christiansen, P. (2024). Digital breast tomosynthesis versus X-ray of the breast specimen for intraoperative margin assessment: A randomized trial. The Breast, 73, Article 103616. https://doi.org/10.1016/j.breast.2023.103616

Baindoor, S., Gibriel, H. A. Y., Venø, M. T., Su, J., Morrissey, E. P., Jirström, E., Woods, I., Kenny, A., Alves, M., Halang, L., Fabbrizio, P., Bilen, M., Engel, T., Hogg, M. C., Bendotti, C., Nardo, G., Slack, R. S., Kjems, J. & Prehn, J. H. M. (2024). Distinct fingerprints of tRNA-derived small non-coding RNA in animal models of neurodegeneration. Disease Models & Mechanisms, 17(11), Article dmm050870. https://doi.org/10.1242/dmm.050870

Rezi, C. K., Aslanyan, M. G., Diwan, G. D., Cheng, T., Chamlali, M., Junger, K., Anvarian, Z., Lorentzen, E., Pauly, K. B., Afshar-Bahadori, Y., Fernandes, E. F. A., Qian, F., Tosi, S., Christensen, S. T., Pedersen, S. F., Strømgaard, K., Russell, R. B., Miner, J. H., Mahjoub, M. R. ... Pedersen, L. B. (2024). DLG1 functions upstream of SDCCAG3 and IFT20 to control ciliary targeting of polycystin-2. EMBO Reports, 25(7), 3040-3063. https://doi.org/10.1038/s44319-024-00170-1

Davidson, L., Rouvière, J. O., Sousa-Luís, R., Nojima, T., Proudfoot, N. J., Jensen, T. H. & West, S. (2024). DNA-directed termination of mammalian RNA polymerase II. Genes and Development, 38(21-24), 998-1019. https://doi.org/10.1101/gad.351978.124

Balachandra, V., Shrestha, R. L., Hammond, C. M., Lin, S., Hendriks, I. A., Sethi, S. C., Chen, L., Sevilla, S., Caplen, N. J., Chari, R., Karpova, T. S., McKinnon, K., Todd, M. A. M., Koparde, V., Cheng, K. C. C., Nielsen, M. L., Groth, A. & Basrai, M. A. (2024). DNAJC9 prevents CENP-A mislocalization and chromosomal instability by maintaining the fidelity of histone supply chains. EMBO Journal, 43(11), 2166-2197. https://doi.org/10.1038/s44318-024-00093-6

Gøkhan, M. A., Sørensen, E. S. & Baad-Hansen, L. (2024). Do milk proteins relieve capsaicin-induced burning sensation in the oral cavity? Journal of Sensory Studies, 39(3), Article e12921. https://doi.org/10.1111/joss.12921