Bergman, J., Pedersen, R., Lundgren, E. J., Lemoine, R. T., Monsarrat, S., Pearce, E. A., Schierup, M. H. & Svenning, J. C. (2023).
Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change.
Nature Communications,
14(1), Article 7679.
https://doi.org/10.1038/s41467-023-43426-5
Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. ... Farh, K. K. H. (2023).
The landscape of tolerated genetic variation in humans and primates.
Science (New York, N.Y.),
380(6648), Article abn8197.
https://doi.org/10.1126/science.abn8197
Vogl, C., Karapetiants, M., Yıldırım, B., Kjartansdóttir, H., Kosiol, C.
, Bergman, J., Majka, M. & Mikula, L. C. (2024).
Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed).
BMC Bioinformatics,
25(1), Article 151.
https://doi.org/10.1186/s12859-024-05751-4
Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D.
, Bataillon, T., Manu, S., Valenzuela, A. ... Farh, K. K. H. (2024).
Identification of constrained sequence elements across 239 primate genomes.
Nature,
625(7996), 735-742.
https://doi.org/10.1038/s41586-023-06798-8
Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S.
, Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J. ... Rogers, J. (2023).
Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons.
Science (New York, N.Y.),
380(6648), Article eabn8153.
https://doi.org/10.1126/science.abn8153