2015

Publications 2015

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van den Berg, I. (2015). The use of whole sequence data for genomic selection in dairy cattle.

van den Berg, I., Boichard, D. & Lund, M. S. (2015). Prediction of causative genomic relationships using sequence data of five French and Danish dairy cattle breeds. Poster session præsenteret ved Plant & Animal Genome XXIII, San Diego, CA, USA.

van den Berg, I., Boichard, D. & Lund, M. S. (2015). Multi-breed GWAS and meta-analysis using sequences of five dairy cattle breeds improve QTL mapping. I Book of Abstract of the 66th Annual Meeting of the European Federation of Animal Science (Bind 21, s. 347-347). The Netherlands: Wageningen Academic Publishers. European Association for Animal Production. Annual Meeting. Book of Abstracts

van Parijs, F. R. D., Ruttink, T., Boerjan, W., Haesaert, G., Byrne, S. L., Asp, T. ... Muylle, H. (2015). Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne. Plant Biology, 17(4), 877-892. https://doi.org/10.1111/plb.12316

de los Campos, G., Sorensen, D. & Gianola, D. (2015). Genomic Heritability: What Is It? P L o S Genetics, 11(5), 1-21. https://doi.org/10.1371/journal.pgen.1005048

de Haas, Y., Pryce, J. E., Calus, M. P. L., Wall, E., Berry, D. P., Løvendahl, P. ... Veerkamp, R. F. (2015). Genomic prediction of dry matter intake in dairy cattle from an international data set consisting of research herds in Europe, North America, and Australasia. Journal of Dairy Science, 98(9), 6522-6534. https://doi.org/10.3168/jds.2014-9257

de Haas, Y. & Lassen, J. (2015). METHAGENE - towards large-scale methane measuremtns on individual ruminants for genetic evaluation. I Abstracts of the 66th Annual Meeting of the European Federation of Animal Science (Bind 21, s. 90-90). The Netherlands: Wageningen Academic Publishers. European Association for Animal Production. Annual Meeting. Book of Abstracts https://doi.org/10.3920/978-90-8686-816-2

de Ford , C., Calderon, C., Sehgal, P., Fedosova, N., Murillo, R., Olesen, C. ... Merfort, I. (2015). Discovery of Tricyclic Clerodane Diterpenes as Sarco/Endoplasmic Reticulum Ca(2+)-ATPase Inhibitors and Structure-Activity Relationships. Journal of Natural Products, 78 (6), 1262–1270.

Zuccaro, L., Tesauro, C., Kurkina, T., Fiorani, P., Ki Yu, H., Knudsen, B. R. ... Balasubramanian, K. (2015). Real-Time Label-Free Direct Electronic Monitoring of Topoisomerase Enzyme Binding Kinetics on Graphene. ACS Nano, 9(11), 11166-11176. https://doi.org/10.1021/acsnano.5b05709

Zocher, G., Vilstrup, J., Heine, D., Hallab, A., Goralski, E., Hertweck, C. ... Stehle, T. (2015). Structural basis of head to head polyketide fusion by CorB. Chemical Science, 6(11), 6525-6536. https://doi.org/10.1039/c5sc02488a

Zhang, Q., Calus, M. P. L., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2015). Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds. B M C Genetics, 16(88), 1-16. https://doi.org/10.1186/s12863-015-0227-7

Zhang, Q., Guldbrandtsen, B., Bosse, M., Lund, M. S. & Sahana, G. (2015). Runs of homozygosity and distribution of functional variants in cattle genome. B M C Genomics, 16(542), 1-16. https://doi.org/10.1186/s12864-015-1715-x

Zhang, H., Wang, W-Q., Liu, S-J., Møller, I. M. & Song, S-Q. (2015). Proteome Analysis of Poplar Seed Vigor. PLOS ONE, 10(7), [e0132509]. https://doi.org/10.1371/journal.pone.0132509

Zgadzaj, R., James, E. K., Kelly, S., Kawaharada, Y., de Jonge, N., Jensen, D. B. ... Radutoiu, S. (2015). A Legume Genetic Framework Controls Infection of Nodules by Symbiotic and Endophytic Bacteria. P L o S Genetics, 11(6), [1005280]. https://doi.org/10.1371/journal.pgen.1005280

Zetouni, L., Sørensen, A. C., Henryon, M. & Lassen, J. (2015). Direct multitrait selection gives the highest genetic response in a ratio trait. I Book of Abstracts of the 66th Annual Meeting of the European Federation of Animal Science (Bind 21, s. 288-288). The Netherlands: Wageningen Academic Publishers. European Association for Animal Production. Annual Meeting. Book of Abstracts https://doi.org/10.3920/978-90-8686-816-2

Zeng, G., Vad, B. S., Dueholm, M. S., Christiansen, G., Nilsson, M., Tolker-Nielsen, T. ... Otzen, D. E. (2015). Functional bacterial amyloid increases Pseudomonas biofilm hydrophobicity and stiffness. Frontiers in Microbiology, 6, 1099. https://doi.org/10.3389/fmicb.2015.01099

Yu, X., Pijut, P. M., Byrne, S., Asp, T., Bai, G. & Jiang, Y. (2015). Candidate gene association mapping for winter survival and spring regrowth in perennial ryegrass. Plant Science, 235, 37-45. https://doi.org/10.1016/j.plantsci.2015.03.003

Yatime, L., Maasch, C., Hoehlig, K., Klussmann, S., Andersen, G. R. & Vater, A. (2015). Structural basis for the targeting of complement anaphylatoxin C5a using a mixed L-RNA/L-DNA aptamer. Nature Communications, 6, 1-13. [6481]. https://doi.org/10.1038/ncomms7481

Yang, C., Thomsen, R. P., Ogaki, R., Kjems, J. & Mian Teo, B. (2015). Ultrastable green fluorescence carbon dots with a high quantum yield for bioimaging and use as theranostic carriers. Journal of Materials Chemistry B, 3(4577), 4577-4584. https://doi.org/10.1039/C5TB00467E

Yang, C., Ogaki, R., Hansen, L., Kjems, J. & Mian Teo, B. (2015). Theranostic carbon dots derived from garlic with efficient anti-oxidative effects towards macrophages. R S C Advances, 118, 97836-97840. https://doi.org/10.1039/C5RA16874K

Xue, Y., Wang, L., Xia, D., Li, Q., Gao, S., Dong, MD. ... Duan, X. (2015). Dental Abnormalities Caused by Novel Compound Heterozygous CTSK Mutations. Advances in Dental Research, 94(5), 674-681. https://doi.org/10.1177/0022034515573964

Xu, P. (2015). Intervention with Serine Protease Activity with Small Peptides.

Xu, P., Xu, M., Jiang, L., Yang, Q., Luo, Z., Dauter, Z. ... Andreasen, P. A. (2015). Design of Specific Serine Protease Inhibitors Based on a Versatile Peptide Scaffold: Conversion of a Urokinase Inhibitor to a Plasma Kallikrein Inhibitor. Journal of Medicinal Chemistry, 58(22), 8868-8876. https://doi.org/10.1021/acs.jmedchem.5b01128

Xiang, T., Ma, P., Ostersen, T., Legarra, A. & Christensen, O. F. (2015). Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels. Genetics Selection Evolution, 47(54), 1-12. https://doi.org/10.1186/s12711-015-0134-4

Xiang, T., Nielsen, B., Legarra, A. & Christensen, O. F. (2015). Application of single-step genomic evaluation for crossbred performance in pig. I Book of Abstract of the 66th Annual Meeting of the European Federation of Animal Science (Bind 21). The Netherlands: Wageningen Academic Publishers. European Association for Animal Production. Annual Meeting. Book of Abstracts https://doi.org/10.3920/978-90-8686-816-2

Wu, X., Lund, M. S., Sahana, G., Guldbrandtsen, B., Sun, D., Zhang, Q. & Su, G. (2015). Association analysis for udder health based on SNP-panel and sequence data in Danish Holsteins. Genetics Selection Evolution, 47(50), 1-14. https://doi.org/10.1186/s12711-015-0129-1

Wu, X., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2015). Detection of hapotypes responsible for prenatal death in cattle. I Book of Abstract of the 66th Annual Meeting of the 66th Annual Meeting of the European Federation of Animal Science (Bind 21, s. 278-278). The Netherlands: Wageningen Academic Publishers. European Association for Animal Production. Annual Meeting. Book of Abstracts https://doi.org/10.3920/978-90-8686-816-2

Wu, X., Lund, M. S., Sun, D., Zhang, Q. & Su, G. (2015). Impact of relationships between test and training animals and among training animals on reliability of genomic prediction. Journal of Animal Breeding and Genetics (Online), 132(5), 366-375. https://doi.org/10.1111/jbg.12165

Wong, J. E. M. M., Midtgaard, S. R., Gysel, K., Thygesen, M. B., Sørensen, K. K., Jensen, K. J. ... Blaise, M. (2015). An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase. Acta crystallographica Section D: Structural biology , 71(Pt 3), 592-605. https://doi.org/10.1107/S139900471402793X

Wone, B. W. M., Madsen, P., Donovan, E. R., Labocha, M. K., Sears, M. W., Downs, C. J. ... Hayes, J. P. (2015). A strong response to selection on mass-independent maximal metabolic rate without a correlated response in basal metabolic rate. Heredity, 114, 417-427. https://doi.org/10.1038/hdy.2014.122

Wolf, G., Yang, P., Füchtbauer, A. C., Füchtbauer, E-M., Silva, A. M., Park, C. ... Macfarlan, T. S. (2015). The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses. Genes & Development, 29(5), 538-54. https://doi.org/10.1101/gad.252767.114

Winther, S., Svensson, M., Jørgensen, H. S., Bouchelouche, K., Gormsen, L. C., Pedersen, B. B. ... Bøttcher, M. (2015). Diagnostic Performance of Coronary CT Angiography and Myocardial Perfusion Imaging in Kidney Transplantation Candidates. JACC. Cardiovascular imaging. https://doi.org/10.1016/j.jcmg.2014.12.028

Wiggans, G. R., Su, G., Cooper, T. A., Nielsen, U. S., Aamand, G. P., Guldbrandtsen, B. ... VanRaden, P. M. (2015). Short communication: Improving accuracy of Jersey genomic evaluations in the United States and Denmark by sharing reference population bulls. Journal of Dairy Science, 98(5), 3508-3513. https://doi.org/10.3168/jds.2014-8874

Westberg, M., Holmegaard, L., Pimenta, F. M., Etzerodt, M. & Ogilby, P. R. (2015). Rational design of an efficient, genetically encodable, protein-encased singlet oxygen photosensitizer. Journal of the American Chemical Society, 137(4), 1632-42. https://doi.org/10.1021/ja511940j

Wang, W-Q., Liu, S-J., Song, S-Q. & Møller, I. M. (2015). Proteomics of seed development, desiccation tolerance, germination and vigor. Plant Physiology and Biochemistry, 86, 1-15. https://doi.org/10.1016/j.plaphy.2014.11.003

Wang, Z., D'Annessa, I., Tesauro, C., Croce, S., Ottaviani, A., Fiorani, P. & Desideri, A. (2015). Mutation of Gly717Phe in human topoisomerase 1B has an effect on enzymatic function, reactivity to the camptothecin anticancer drug and on the linker domain orientation. BBA Proteins and Proteomics, 1854(8), 860-868. https://doi.org/10.1016/j.bbapap.2015.04.017

Wang, W-Q., Song, B-Y., Deng, Z-J., Wang, Y., Liu, S-J., Møller, I. M. & Song, S-Q. (2015). Proteomic analysis of lettuce seed germination and thermoinhibition by sampling of individual seeds at germination and removal of storage proteins by polyethylene glycol fractionation. Plant Physiology, 167(4), 1332-1350. https://doi.org/10.1104/pp.15.00045

Wang, X., Ma, P., Liu, J., Zhang, Q., Zhang, Y., Ding, X. ... Zhang, Y. (2015). Genome-wide association study in Chinese Holstein cows reveal two candidate genes for somatic cell score as an indicator for mastitis susceptibility. BMC Genetics, 16(1), [111]. https://doi.org/10.1186/s12863-015-0263-3

Wahinya, P. K., Otieno, T. O., Kosgey, I. S. & Kahi, A. K. (2015). Economic and Biological Values for Pasture-Based Dairy Cattle Porduction Systems and their Application in Genetic Improvement in the Tropics. Journal of Animal Production Advances, 5(5), 664-675. https://doi.org/10.5455/japa.20150517032130

Wack, A., Terczynska-Dyla, E. & Hartmann, R. (2015). Guarding the frontiers: the biology of type III interferons. Nature Immunology, 16(8), 802-809. https://doi.org/10.1038/ni.3212

Viuff, A. H., Besenbacher, L. M., Kamori, A., Jensen, M. T., Kilian, M., Kato, A. & Jensen, H. H. (2015). Stable analogues of nojirimycin--synthesis and biological evaluation of nojiristegine and manno-nojiristegine. Organic & Biomolecular Chemistry, 13(37), 9637-58. https://doi.org/10.1039/c5ob01281c

Vetter, M. M., Wang, J., Lorentzen, E. & Deretic, D. (2015). Novel topography of the Rab11-effector interaction network within a ciliary membrane targeting complex. Small GTPases, 6(4), 165-173. https://doi.org/10.1080/21541248.2015.1091539

Vestergaard, M., Mikkelsen, A., Bjerring, M., Spleth, P. & Kargo, M. (2015). Performance of cressbred Holstein bulls and heifer calves slaughtered at 12-month of age. I Book of Abstract of the 66th Annual Meeting of the European Federation of Animal Science (Bind 21, s. 241-241). The Netherlands. European Association for Animal Production. Annual Meeting. Book of Abstracts https://doi.org/10.3920/978-90-8686-816-2

Venø, S. T., Witt, M. B., Kulikowicz, T., Bohr, V. A. & Stevnsner, T. (2015). Regulation of the human Suv3 helicase on DNA by inorganic cofactors. Biochimie, 108, 160-168. https://doi.org/10.1016/j.biochi.2014.11.003

Venø, M. T., Hansen, T. B., Venø, S. T., Clausen, B. H., Grebing, M., Finsen, B. ... Kjems, J. (2015). Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development. Genome Biology, 16, [16:245]. https://doi.org/10.1186/s13059-015-0801-3

Vad, B. S., Balakrishnan, V. S., Nielsen, S. B. & Otzen, D. (2015). Phospholipid Ether Linkages Significantly Modulate the Membrane Affinity of the Antimicrobial Peptide Novicidin. Journal of Membrane Biology, 487-496. https://doi.org/10.1007/s00232-015-9792-y

Umićević Mirkov, M., Janss, L., Vermeulen, S. H., van de Laar, M. A. F. J., van Riel, P. L. C. M., Guchelaar, H-J. ... Coenen, M. J. H. (2015). Estimation of heritability of different outcomes for genetic studies of TNFi response in patients with rheumatoid arthritis. Annals of the Rheumatic Diseases, 74(12), 2183-2187. https://doi.org/10.1136/annrheumdis-2014-205541

Ulrich-Lynge, S. L., Dalgaard, T. S., Norup, L. R., Song, X., Sørensen, P. & Juul-Madsen, H. R. (2015). Chicken mannose-binding lectin function in relation to antibacterial activity towards Salmonella enterica. Immunobiology, 220(5), 555-563. https://doi.org/10.1016/j.imbio.2014.12.007

Ulrich-Lynge, S. L., Dalgaard, T. S., Norup, L. R., Kjærup, R. M., Olsen, J. E., Sørensen, P. & Juul-Madsen, H. R. (2015). The consequence of low mannose-binding lectin concentration in chickens in relation to susceptibility to Salmonella Infantis in chickens. Veterinary Immunology and Immunopathology, 163(1-2), 23-32. https://doi.org/10.1016/j.vetimm.2014.11.003

Tudek, A., Candelli, T. & Libri, D. (2015). Non-coding transcription by RNA polymerase II in yeast: Hasard or nécessité? Biochimie, 117(Special Issue: Regulatory RNAs), 28-36. https://doi.org/10.1016/j.biochi.2015.04.020

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