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Nel, L., Thaysen, K., Jamecna, D., Olesen, E., Langer, J., Frain, K. M., Szomek, M., Höglinger, D., Wüstner, D. & Pedersen, B. P. (2025). Structural and biochemical analysis of ligand binding in yeast Niemann–Pick type C1–related protein. Life Science Alliance, 8(1), Artikel e202402990. https://doi.org/10.26508/lsa.202402990

TRACERx Consortium (2025). TRACERx analysis identifies a role for FAT1 in regulating chromosomal instability and whole-genome doubling via Hippo signalling. Nature Cell Biology, 27(1), 154-168. Artikel 4871. https://doi.org/10.1038/s41556-024-01558-w

TRACERx Consortium (2025). Ultrasensitive ctDNA detection for preoperative disease stratification in early-stage lung adenocarcinoma. Nature Medicine, 31(1), 70-76. https://doi.org/10.1038/s41591-024-03216-y

Shiraz, M. G., Nielsen, J., Widmann, J., Chung, K. H. K., Davis, T. P., Rasmussen, C., Scavenius, C., Enghild, J. J., Martin-Gallausiaux, C., Singh, Y., Javed, I. & Otzen, D. E. (2025). Young rat microbiota extracts strongly inhibit fibrillation of α-synuclein and protect neuroblastoma cells and zebrafish against α-synuclein toxicity. Molecules and Cells, 48(1), Artikel 100161. https://doi.org/10.1016/j.mocell.2024.100161

Elkhashab, M., Barreto, G., Fauconnier, M., Le Bourlout, Y., Creemers, L. B., Nieminen, H. J. & Howard, K. A. (2025). ADAMTS5-specific gapmer release from an albumin biomolecular assembly and cartilage internalization triggered by ultrasound. Drug Delivery, 32(1), Artikel 2464921. https://doi.org/10.1080/10717544.2025.2464921

Golletz, P., Jensen, S. D., Collignon, M., Hall, C., Khamas, A. B., Møllebjerg, A., Schlafer, S., Meyer, R. L. & Tykwinska, K. (2025). Coaggregation of oral pathogens by postbiotic lactobacilli. Journal of Oral Microbiology, 17(1), Artikel 2508483. https://doi.org/10.1080/20002297.2025.2508483

Nguyen, M. T. A., Andersen, E. S. & Pothoulakis, G. (2025). Construction of Small Genes with Repetitive Elements Using Oligo Extension and Golden Gate Assembly. I D. Schindler (red.), Golden Gate Cloning (s. 219-227). Humana Press. https://doi.org/10.1007/978-1-0716-4220-7_12

Ingham, A., de Vega, I. A., Morlot, L., Gittens, W., Hendriks, I. A., Kakulidis, E. S., Freire, R., Davey, N. E., Duxin, J. P., Lund Nielsen, M. & Mailand, N. (2025). CRAMP1-dependent histone H1 biogenesis is essential for topoisomerase II inhibitor tolerance. Molecular Cell, 85(13), 2487-2502. https://doi.org/10.1016/j.molcel.2025.04.006

de Evan, T., Wang, W., Foldager, L. & Weisbjerg, M. R. (2025). Dairy cow phenotypes related to methane yield. 315. Abstract fra 9th GGAA, International Greenhouse Gas & Animal Agriculture Conference, Nairobi, Kenya. https://ggaaconference.org/storage/2026/01/GGAA2025-bookofabstracts-NIBIOBook11-9.pdf

Wakabayashi, T., Andersen, S. U., Tanaka, S., Sato, S., Kawaguchi, M., Kato, K. & Setoguchi, H. (2025). Genome-wide association study identifies candidate genes contributing to flowering time variation in Lotus japonicus in Japan. Plant Biotechnology, 42(1), 17-29. https://doi.org/10.5511/plantbiotechnology.24.1023a

Teixeira, L. M. C., Paiva, P., Johansen, M. B., Sommerfeldt, A., Petersen, A. R., Rotilio, L., Sandahl, A., Morth, J. P., Westh, P., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Hydrolysis of the Urethane Bond Catalyzed by Pseudomonas sp. MIS38 Lipase: A QM/MM Mechanistic Insight. ACS Catalysis, 15, 14728-14740. https://doi.org/10.1021/acscatal.5c03228

Peña-Díaz, S., Manglano-Artuñedo, Z., Pinheiro, F. & Ventura, S. (2025). Identification of α-Synuclein Aggregation Inhibitors via High-Throughput Screening. I Neuromethods (s. 61-85). The Humana Press Inc.. https://doi.org/10.1007/978-1-0716-4232-0_3

Anagho-Mattanovich, M., Anagho-Mattanovich, H. A., Argemi-Muntadas, L., Nielsen, M. L., Gao, Q. & Moritz, T. (2025). Multi-omics analysis of thermogenic lipolysis in brown adipocytes. iScience, 28(9), Artikel 113382. https://doi.org/10.1016/j.isci.2025.113382

Gadi, S. A., Hendriks, I. A., Nielsen, C. F., Popova, P., Hickson, I. D., Nielsen, M. L. & Toledo, L. (2025). Quantitative Chromatin Protein Dynamics During Replication Origin Firing in Human Cells. Molecular and Cellular Proteomics, 24(3), Artikel 100915. https://doi.org/10.1016/j.mcpro.2025.100915

Marín-Arraiza, L., Roa-Eguiara, A., Pape, T., Sofos, N., Hendriks, I. A., Lund Nielsen, M., Steiner-Rebrova, E. M. & Taylor, N. M. I. (2025). Structural characterization of an extracellular contractile injection system from Photorhabdus luminescens in extended and contracted states. Nature Communications, 16(1), Artikel 9327. https://doi.org/10.1038/s41467-025-64377-z

ICTV Taxonomy Summary Consortium (2025). Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Fungal and Protist Viruses Subcommittee, 2025. The Journal of general virology, 106(7), Artikel 002115. https://doi.org/10.1099/jgv.0.002115

Selten, G., Gómez-Repollés, A., Lamouche, F., Radutoiu, S. & de Jonge, R. (2025). SyFi: generating and using sequence fingerprints to distinguish SynCom isolates. Microbial Genomics, 11(9), Artikel 001461. https://doi.org/10.1099/mgen.0.001461

Kofod Petersen, A., Villesen, P. & Staun Larsen, L. (2025). The oral fingerprint: rapid 3D comparison of palatal rugae for forensic identification. Frontiers in Radiology, 5, Artikel 1638294. https://doi.org/10.3389/fradi.2025.1638294

Fedosov, S. N. (2025). The uptake of ingested vitamin B12 and its total body balance: a mathematical model suggests the optimal supplementation strategy. Biochimie. Advance online publication. https://doi.org/10.1016/j.biochi.2025.12.002

Paiva, P., Teixeira, L. M. C., Ferreira, P., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Transforming Computational Power into Environmental Solutions: HPC-driven Research on Urethanase-mediated Plastic Degradation. Procedia Computer Science, 267, 207-217. https://doi.org/10.1016/j.procs.2025.08.247

Paiva, P., Teixeira, L. M. C., Wei, R., Liu, W., Weber, G., Morth, J. P., Westh, P., Petersen, A. R., Johansen, M. B., Sommerfeldt, A., Sandahl, A., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Unveiling the enzymatic pathway of UMG-SP2 urethanase: insights into polyurethane degradation at the atomic level. Chemical Science, 16(5), 2437-2452. https://doi.org/10.1039/d4sc06688j

de Evan, T., Wang, W., Foldager, L. & Weisbjerg, M. R. (2025). Variation in individual cow’s response to methane-reducing additives. 110. Abstract fra 9th GGAA, International Greenhouse Gas & Animal Agriculture Conference, Nairobi, Kenya. https://ggaaconference.org/storage/2026/01/GGAA2025-bookofabstracts-NIBIOBook11-9.pdf

Etzerodt, A., Mikkelsen, J. H., Torvund-Jensen, M., Hennig, D., Boesen, T., Graversen, J. H., Moestrup, S. K., Kollman, J. M. & Andersen, C. B. F. (2024). The Cryo-EM structure of human CD163 bound to haptoglobin-hemoglobin reveals molecular mechanisms of hemoglobin scavenging. Nature Communications, 15(1), Artikel 10871. https://doi.org/10.1038/s41467-024-55171-4

Borg, K. N., Shetty, A., Cheng, G., Zhu, S., Wang, T., Yuan, W., Ho, H. P., Knudsen, B. R., Tesauro, C. & Ho, Y. P. (2024). Hydrogel bead-based isothermal detection (BEAD-ID) for assessing the activity of DNA-modifying enzymes. iScience, 27(12), Artikel 111332. https://doi.org/10.1016/j.isci.2024.111332

Borg, K. N., Shetty, A., Cheng, G., Zhu, S., Wang, T., Ho, H. P., Knudsen, B. R., Tesauro, C. & Ho, Y.-P. (2024). Hydrogel bead-based isothermal detection (BEAD-ID) for assessing the activity of DNA-modifying enzymes. iScience, 27(12), Artikel 111332. https://doi.org/10.1016/j.isci.2024.111332

Korhonen, S., Stenberg, K., Seemab, U., Bartos, P., Mäkiniemi, K., Kjems, J., Dupont, D. M. & Subrizi, A. (2024). Targeting ocular tissues with intravenously administered aptamers selected by in vivo SELEX. Molecular Therapy Nucleic Acids, 35(4), Artikel 102352. https://doi.org/10.1016/j.omtn.2024.102352

Breinbjerg, A., Jørgensen, C. S., Walters, G. B., Grove, J., Als, T. D., Kamperis, K., Stéfansdóttir, L., Thirstrup, J. P., Borg, B., Albiñana, C., Vilhjálmsson, B. J., Eðvarðsson, V. Ö., Stefánsson, H., Mortensen, P. B., Agerbo, E., Werge, T., Børglum, A., Demontis, D., Stefánsson, K. ... Christensen, J. H. (2024). Exploring the Genetic Risk of Childhood Daytime Urinary Incontinence: A Genome-Wide Association Study. The Journal of Urology, 212(6), 851-861. https://doi.org/10.1097/JU.0000000000004187

Yamamoto, S., Nakamura, H., Kawamura, Y. K., Kitazawa, T., Kimura, M. & Kitazawa, Y. (2024). Alkoxy Substituted Brominated closo-Dodecaborates with Functionalized Aliphatic Spacers. Chemistry, 6(6), 1635-1644. https://doi.org/10.3390/chemistry6060099

Montalbano, S., Krebs, M. D., Rosengren, A., Vaez, M., Hellberg, K. L. G., Mortensen, P. B., Børglum, A. D., Geschwind, D. H., Raznahan, A., Thompson, W. K., Helenius, D., Werge, T., Ingason, A. & iPSYCH Investigators (2024). Analysis of exonic deletions in a large population study provides novel insights into NRXN1 pathology. npj Genomic Medicine, 9(1), Artikel 67. https://doi.org/10.1038/s41525-024-00450-8

Vieira de Sá, R., Sudria-Lopez, E., Cañizares Luna, M., Harschnitz, O., van den Heuvel, D. M. A., Kling, S., Vonk, D., Westeneng, H. J., Karst, H., Bloemenkamp, L., Varderidou-Minasian, S., Schlegel, D. K., Mars, M., Broekhoven, M. H., van Kronenburg, N. C. H., Adolfs, Y., Vangoor, V. R., de Jongh, R., Ljubikj, T. ... Pasterkamp, R. J. (2024). ATAXIN-2 intermediate-length polyglutamine expansions elicit ALS-associated metabolic and immune phenotypes. Nature Communications, 15(1), Artikel 7484. https://doi.org/10.1038/s41467-024-51676-0

Nielsen, I. H., Rovsing, A. B., Janns, J. H., Thomsen, E. A., Ruzo, A., Bøggild, A., Nedergaard, F., Møller, C. T., Boesen, T., Degn, S. E., Shah, J. V. & Mikkelsen, J. G. (2024). Cell-targeted gene modification by delivery of CRISPR-Cas9 ribonucleoprotein complexes in pseudotyped lentivirus-derived nanoparticles. Molecular Therapy Nucleic Acids, 35(4), Artikel 102318. https://doi.org/10.1016/j.omtn.2024.102318

Rybiczka-Tešulov, M., Garritsen, O., Venø, M. T., Wieg, L., Dijk, R. V., Rahimi, K., Gomes-Duarte, A., Wit, M. D., van de Haar, L. L., Michels, L., van Kronenburg, N. C. H., van der Meer, C., Kjems, J., Vangoor, V. R. & Pasterkamp, R. J. (2024). Circular RNAs regulate neuron size and migration of midbrain dopamine neurons during development. Nature Communications, 15(1), Artikel 6773. https://doi.org/10.1038/s41467-024-51041-1

Vangoor, V. R., Giuliani, G., de Wit, M., Rangel, C. K., Venø, M. T., Schulte, J. T., Gomes-Duarte, A., Senthilkumar, K., Puhakka, N., Kjems, J., de Graan, P. N. E. & Pasterkamp, R. J. (2024). Compartment-specific small non-coding RNA changes and nucleolar defects in human mesial temporal lobe epilepsy. Acta Neuropathologica, 148(1), Artikel 61. https://doi.org/10.1007/s00401-024-02817-8

Salomonsen, C., Martyn, A., Quilbé, J., Björgvinsdóttir, Þ. N., Andersen, S. U., Radutoiu, S. & Glasius, M. (2024). Comprehensive characterization of the rhizosphere metabolome: A novel method for non-targeted analysis of Lotus japonicus root exudates. Rhizosphere, 32, Artikel 100957. https://doi.org/10.1016/j.rhisph.2024.100957

Holst, J. M., Pedersen, M. B., Enemark, M. B., Hansen, M. C., Noerhave, P. R., Plesner, T. L., Frederiksen, H., Moeller, M. B., Hamilton-Dutoit, S. J., Noergaard, P., Mortensen, B. K., Ommen, H. B., Stentoft, J., Tam, W., Ludvigsen, M., Chan, W. C., Birkbak, N. J., Inghirami, G. & d’Amore, F. (2024). Co-shared genomic alterations within tumors from patients with both myeloproliferative neoplasms and lymphoma. Haematologica, 109(12), 4067-4072. https://doi.org/10.3324/haematol.2023.283798

Cai, H., Zhang, B., Ahrenfeldt, J., Joseph, J. V., Riedel, M., Gao, Z., Thomsen, S. K., Christensen, D. S., Bak, R. O., Hager, H., Vendelbo, M. H., Gao, X., Birkbak, N. & Thomsen, M. K. (2024). CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature Communications, 15(1), Artikel 2088. https://doi.org/10.1038/s41467-024-46370-0, https://doi.org/10.1038/s41467-024-46370-0

Mehmood, S., Thirup, S. S., Ahmed, S., Bashir, N., Saeed, A., Rafiq, M., Saeed, Q., Najam-ul-Haq, M., Khaliq, B., Ibrahim, M., Alonazi, W. B. & Akrem, A. (2024). Crystal structure of Kunitz-type trypsin inhibitor: Entomotoxic effect of native and encapsulated protein targeting gut trypsin of Tribolium castaneum Herbst. Computational and Structural Biotechnology Journal, 23, 3132-3142. https://doi.org/10.1016/j.csbj.2024.07.023

Rüegg, A. B., van der Weijden, V. A., de Sousa, J. A., von Meyenn, F., Pausch, H. & Ulbrich, S. E. (2024). Developmental progression continues during embryonic diapause in the roe deer. Communications Biology, 7(1), Artikel 270. https://doi.org/10.1038/s42003-024-05944-w

Bai, Z., Gholipourshahraki, T., Shrestha, M., Hjelholt, A., Hu, S., Kjolby, M., Rohde, P. D. & Sørensen, P. (2024). Evaluation of Bayesian Linear Regression derived gene set test methods. BMC Genomics, 25(1), Artikel 1236. https://doi.org/10.1186/s12864-024-11026-2

Mendoza-Suárez, M., Akyol, T. Y., Nadzieja, M. & Andersen, S. U. (2024). Increased diversity of beneficial rhizobia enhances faba bean growth. Nature Communications, 15(1), Artikel 10673. https://doi.org/10.1038/s41467-024-54940-5

Knudsen, L. J., Rauh, V., Pedersen, J. N., Dekker, P., Otzen, D. E., Larsen, L. B. & Nielsen, S. D. H. (2024). Insight into protein crosslinking and casein polymerization in pre- and posthydrolyzed lactose-free ultra-high-temperature milk during long-term storage. Journal of Dairy Science, 107(12), 10497-10511. https://doi.org/10.3168/jds.2024-25103

Khemka, N., Morris, G., Kazemzadeh, L., Costard, L. S., Neubert, V., Bauer, S., Rosenow, F., Venø, M. T., Kjems, J., Henshall, D. C., Prehn, J. H. M. & Connolly, N. M. C. (2024). Integrative network analysis of miRNA-mRNA expression profiles during epileptogenesis in rats reveals therapeutic targets after emergence of first spontaneous seizure. Scientific Reports, 14(1), Artikel 15313. https://doi.org/10.1038/s41598-024-66117-7

Nielsen, S. M., Johnsen, K. K., Hansen, L. B. S., Rikvold, P. D., Møllebjerg, A., Palmén, L. G., Durhuus, T., Schlafer, S. & Meyer, R. L. (2024). Large-scale screening identifies enzyme combinations that remove in situ grown oral biofilm. Biofilm, 8, Artikel 100229. https://doi.org/10.1016/j.bioflm.2024.100229

Shahsavari, S., Rad, M. B., Hajiaghajani, A., Rostami, M., Hakimian, F., Jafarzadeh, S., Hasany, M., Collingwood, J. F., Aliakbari, F., Fouladiha, H., Bardania, H., Otzen, D. E. & Morshedi, D. (2024). Magnetoresponsive liposomes applications in nanomedicine: A comprehensive review. Biomedicine & Pharmacotherapy, 181, Artikel 117665. https://doi.org/10.1016/j.biopha.2024.117665

Hobor, S., Al Bakir, M., Hiley, C. T., Skrzypski, M., Frankell, A. M., Bakker, B., Watkins, T. B. K., Markovets, A., Dry, J. R., Brown, A. P., van der Aart, J., van den Bos, H., Spierings, D., Oukrif, D., Novelli, M., Chakrabarti, T., Rabinowitz, A. H., Ait Hassou, L., Litière, S. ... TRACERx Consortium (2024). Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling. Nature Communications, 15(1), Artikel 4871. https://doi.org/10.1038/s41467-024-47606-9

Czarnocka-Cieciura, A., Poznański, J., Turtola, M., Tomecki, R., Krawczyk, P. S., Mroczek, S., Orzeł, W., Saha, U., Jensen, T. H., Dziembowski, A. & Tudek, A. (2024). Modeling of mRNA deadenylation rates reveal a complex relationship between mRNA deadenylation and decay. EMBO Journal, 43(24), 6525-6554. Artikel e1737. https://doi.org/10.1038/s44318-024-00258-3

Juul-Kristensen, T., Thiesen, C., Haurum, L. W., Keller-Socin, J. G., Lendamba, R. W., Zoleko Manego, R., Betouke, M. E., Knudsen, B. R., Pareja, E., Pareja-Tobes, E., Labouriau, R., Ghyslain, M.-N. & Tesauro, C. (2024). Non-Invasive Malaria Detection in Sub-Saharan Africa Using a DNA-Based Sensor System. Sensors, 24(24), Artikel 7947. https://doi.org/10.3390/s24247947

Birkmose, N., Frydendahl, E. U. & Knudsen, C. R. (2024). Optimized Construction of a Yeast SICLOPPS Library for Unbiased In Vivo Selection of Cyclic Peptides. Biochemistry, 63(24), 3273-3286. https://doi.org/10.1021/acs.biochem.4c00013

Fábián, Z., Kakulidis, E. S., Hendriks, I. A., Kühbacher, U., Larsen, N. B., Oliva-Santiago, M., Wang, J., Leng, X., Dirac-Svejstrup, A. B., Svejstrup, J. Q., Nielsen, M. L., Caldecott, K. & Duxin, J. P. (2024). PARP1-dependent DNA-protein crosslink repair. Nature Communications, 15(1), Artikel 6641. https://doi.org/10.1038/s41467-024-50912-x

Rodriguez-Paniagua, A., Tesauro, C., Knudsen, B. R., Fuertes, M. & Alonso, C. (2024). Phosphine Oxide Indenoquinoline Derivatives: Synthesis and Biological Evaluation as Topoisomerase I Inhibitors and Antiproliferative Agents. Molecules, 29(24), Artikel 5992. https://doi.org/10.3390/molecules29245992

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Helene Eriksen