Cheng, Z., Ferris, C., Crowe, M. A.
, Ingvartsen, K. L., Grelet, C., Vanlierde, A.
, Foldager, L., Becker, F., Wathes, D. C. & GplusE Consortium (2023).
Hepatic global transcriptomic profiles of Holstein cows according to parity reveal age-related changes in early lactation.
International Journal of Molecular Sciences ,
24(12), Artikel 9906.
https://doi.org/10.3390/ijms24129906
Hao, D., Wang, X., Yang, Y., Chen, H.
, Thomsen, B. & Holm, L. E. (2023).
MicroRNA sequence variation can impact interactions with target mRNA in cattle.
Gene,
868, Artikel 147373.
https://doi.org/10.1016/j.gene.2023.147373
Rivas-González, I., Rousselle, M., Li, F., Zhou, L.
, Dutheil, J. Y., Munch, K., Shao, Y., Wu, D.
, Schierup, M. H. & Zhang, G. (2023).
Pervasive incomplete lineage sorting illuminates speciation and selection in primates.
Science,
380(6648), eabn4409. Artikel eabn4409.
https://doi.org/10.1126/science.abn4409
Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B. L., Shao, F., Chen, J. W., Chen, C. Y., Bi, X., Zhuang, X. L., Zhu, H. L., Hu, J., Sun, Z., Li, X., Wang, D.
, Rivas-González, I., Wang, S., Wang, Y. M., Chen, W. ... Wu, D. D. (2023).
Phylogenomic analyses provide insights into primate evolution.
Science (New York, N.Y.),
380(6648), 913-924.
https://doi.org/10.1126/science.abn6919
Gielnik, M., Szymańska, A., Dong, X., Jarvet, J., Svedružić, Ž. M., Gräslund, A., Kozak, M. & Wärmländer, S. K. T. S. (2023).
Prion Protein Octarepeat Domain Forms Transient β-Sheet Structures upon Residue-Specific Binding to Cu(II) and Zn(II) Ions.
Biochemistry,
62(11), 1689-1705.
https://doi.org/10.1021/acs.biochem.3c00129
Bavnhøj, L., Driller, J. H., Zuzic, L., Stange, A. D., Schiøtt, B. & Pedersen, B. P. (2023).
Structure and sucrose binding mechanism of the plant SUC1 sucrose transporter.
Nature Plants,
9(6), 938-950.
https://doi.org/10.1038/s41477-023-01421-0
Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. ... Farh, K. K. H. (2023).
The landscape of tolerated genetic variation in humans and primates.
Science (New York, N.Y.),
380(6648), Artikel abn8197.
https://doi.org/10.1126/science.abn8197
Fruergaard, M. U., Nielsen, C. J. F., Kjeldsen, C. R., Iversen, L., Andersen, J. L. & Nissen, P. (2023).
Activation and inhibition of the C-terminal kinase domain of p90 ribosomal S6 kinases.
Life science alliance,
6(5), Artikel e202201425.
https://doi.org/10.26508/lsa.202201425
Kelly, S., Hansen, S. B., Rübsam, H., Saake, P., Pedersen, E. B.
, Gysel, K., Madland, E., Wu, S., Wawra, S.
, Reid, D., Sullivan, J. T.
, Blahovska, Z., Vinther, M., Muszynski, A., Azadi, P., Thygesen, M. B., Aachmann, F. L., Ronson, C. W., Zuccaro, A.
... Stougaard, J. (2023).
A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus.
PLoS Biology,
21(5), Artikel e3002127.
https://doi.org/10.1371/journal.pbio.3002127
Sun, C., Desch, K., Nassim-Assir, B., Giandomenico, S. L., Nemcova, P., Langer, J. D. & Schuman, E. M. (2023).
An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses.
Science,
380(6647), Artikel 811.
https://doi.org/10.1126/SCIENCE.ADF2018
Keller, J. G.
, Petersen, K. V., Mizielinski, K.
, Thiesen, C., Bjergbæk, L., Reguera, R. M., Pérez-Pertejo, Y., Balaña-Fouce, R., Trejo, A., Masdeu, C., Alonso, C.
, Knudsen, B. R. & Tesauro, C. (2023).
Gel-Free Tools for Quick and Simple Screening of Anti-Topoisomerase 1 Compounds.
Pharmaceuticals,
16(5), Artikel 657.
https://doi.org/10.3390/ph16050657
Chen, Y., Atashi, H., Grelet, C., Mota, R. R., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023).
Genome-wide association study and functional annotation analyses for nitrogen efficiency index and its composition traits in dairy cattle.
Journal of Dairy Science,
106(5), 3397-3410.
https://doi.org/10.3168/jds.2022-22351
Wedge, E.
, Ahmadov, U., Hansen, T. B., Gao, Z., Tulstrup, M., Côme, C., Nonavinkere Srivatsan, S., Ahmed, T., Jespersen, J. S., Schlotmann, B. C., Schöllkopf, C., Raaschou-Jensen, K., Ødum, N.
, Kjems, J., Bak, R. O., Walter, M. J., Grønbæk, K.
& Kristensen, L. S. (2023).
Impact of U2AF1 mutations on circular RNA expression in myelodysplastic neoplasms.
Leukemia,
37(5), 1113-1125.
https://doi.org/10.1038/s41375-023-01866-4
Lassen, J. K., Wang, T., Nielsen, K. L., Hasselstrøm, J. B., Johannsen, M. & Villesen, P. (2023).
Large-Scale metabolomics: Predicting biological age using 10,133 routine untargeted LC–MS measurements.
Aging Cell,
22(5), Artikel e13813.
https://doi.org/10.1111/acel.13813
Larsen, T. V., Daugaard, T. F., Gad, H. H., Hartmann, R. & Nielsen, A. L. (2023).
PD-L1 and PD-L2 immune checkpoint protein induction by type III interferon in non-small cell lung cancer cells.
Immunobiology,
228(3), Artikel 152389.
https://doi.org/10.1016/j.imbio.2023.152389
Sampedro Vallina, N., McRae, E. K. S., Hansen, B. K., Boussebayle, A. & Andersen, E. S. (2023).
RNA origami scaffolds facilitate cryo-EM characterization of a Broccoli-Pepper aptamer FRET pair.
Nucleic Acids Research,
51(9), 4613-4624.
https://doi.org/10.1093/nar/gkad224
Zhang, X., Galenkamp, N. S., Heide, N. J. V. D.
, Valero Moreno, J., Maglia, G.
& Kjems, J. (2023).
Specific Detection of Proteins by a Nanobody-Functionalized Nanopore Sensor.
ACS Nano,
17(10), 9167-9177.
https://doi.org/10.1021/acsnano.2c12733
Mohammad-Beigi, H., Wijaya, W., Madsen, M.
, Hayashi, Y., Li, R., Maria Rovers, T. A., Jæger, T. C., Buell, A. K., Hougaard, A. B., Kirkensgaard, J. J. K., Westh, P., Ipsen, R. & Svensson, B. (2023).
Association of caseins with β-lactoglobulin influenced by temperature and calcium ions: A multi-parameter analysis.
Food Hydrocolloids,
137, Artikel 108373.
https://doi.org/10.1016/j.foodhyd.2022.108373
Afonine, P. V.
, Gobet, A., Moissonnier, L., Martin, J., Poon, B. K. & Chaptal, V. (2023).
Conformational space exploration of cryo-EM structures by variability refinement.
B B A - Biomembranes,
1865(4), 184133.
https://doi.org/10.1016/j.bbamem.2023.184133
Skovbjerg, C. K., Angra, D., Robertson-Shersby-Harvie, T., Kreplak, J., Keeble-Gagnère, G., Kaur, S., Ecke, W., Windhorst, A., Nielsen, L. K., Schiemann, A., Knudsen, J., Gutierrez, N., Tagkouli, V.
, Fechete, L. I., Janss, L., Stougaard, J., Warsame, A., Alves, S., Khazaei, H.
... Andersen, S. U. (2023).
Genetic analysis of global faba bean diversity, agronomic traits and selection signatures.
Theoretical and Applied Genetics,
136(5), Artikel 114.
https://doi.org/10.1007/s00122-023-04360-8
Pedersen, M. L., Pedersen, D. V., Winkler, M. B. L., Olesen, H. G., Søgaard, O. S., Østergaard, L., Laursen, N. S., Rahimic, A. H. F. & Tolstrup, M. (2023).
Nanobody-mediated complement activation to kill HIV-infected cells.
EMBO Molecular Medicine,
15(4), Artikel e16422.
https://doi.org/10.15252/emmm.202216422
Bergeron, L. A.
, Besenbacher, S., Zheng, J., Li, P.
, Bertelsen, M. F., Quintard, B., Hoffman, J. I., Li, Z., St. Leger, J., Shao, C., Stiller, J.
, Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2023).
Evolution of the germline mutation rate across vertebrates.
Nature,
615(7951), 285-291.
https://doi.org/10.1038/s41586-023-05752-y
Hernández-Castellano, L. E., Sørensen, M. T., Foldager, L., Herskin, M. S., Gross, J. J., Bruckmaier, R. M.
& Larsen, M. (2023).
Effects of feeding level, milking frequency, and single injection of cabergoline on blood metabolites, hormones, and minerals around dry-off in dairy cows.
Journal of Dairy Science,
106(4), 2919-2932.
https://doi.org/10.3168/jds.2022-22648
Holm, S., Larsen, R. M.
, Holst, C. M., Heide-Jørgensen, M. P., Steffensen, J. F.
, Stevnsner, T. & Larsen, K. (2023).
Bowhead NEIL1: molecular cloning, characterization, and enzymatic properties.
Biochimie,
206, 136-149.
https://doi.org/10.1016/j.biochi.2022.10.014
Taleski, M., Chapman, K., Novák, O., Schmülling, T.
, Frank, M. & Djordjevic, M. A. (2023).
CEP peptide and cytokinin pathways converge on CEPD glutaredoxins to inhibit root growth.
Nature Communications,
14(1), Artikel 1683.
https://doi.org/10.1038/s41467-023-37282-6
Somavarapu, A. K., Kleijwegt, G.
, Nagaraj, M., Alam, P., Nielsen, J. & Otzen, D. E. (2023).
Drug repurposing screens identify compounds that inhibit α-synuclein oligomers' membrane disruption and block antibody interactions.
Chemical Science,
14(11), 3030-3047.
https://doi.org/10.1039/d2sc05534a
Rasmussen, M. Q., Tindbæk, G., Nielsen, M. M., Merrild, C., Steiniche, T., Pedersen, J. S., Moestrup, S. K., Degn, S. E. & Madsen, M. (2023).
Epigenetic Silencing of LRP2 Is Associated with Dedifferentiation and Poor Survival in Multiple Solid Tumor Types.
Cancers,
15(6), Artikel 1830.
https://doi.org/10.3390/cancers15061830
Skov, L., Coll Macià, M., Lucotte, E. A., Cavassim, M. I. A., Castellano, D.
, Schierup, M. H. & Munch, K. (2023).
Extraordinary selection on the human X chromosome associated with archaic admixture.
Cell Genomics,
3(3), Artikel 100274.
https://doi.org/10.1016/j.xgen.2023.100274
Winters, J. F. M., Foldager, L., Krogh, U., Nørskov, N. & Sørensen, M. T. (2023).
Impact of glyphosate residues in sow diets on neonatal piglets: tail kinks, stillborn and diarrhoea.
Livestock Science,
269, Artikel 105172.
https://doi.org/10.1016/j.livsci.2023.105172
Christensen, B., Nielsen, N. R., Sørensen, M. R., Jacobsen, L. N.
, Ostenfeld, M. S. & Sørensen, E. S. (2023).
Naturally Occurring N-Terminal Fragments of Bovine Milk Osteopontin Are Transported across Models of the Intestinal Barrier.
Biomedicines,
11(3), Artikel 893.
https://doi.org/10.3390/biomedicines11030893
Sørensen, S. G., Shrikhande, A.
, Poulsgaard, G. A., Christensen, M. H., Bertl, J., Laursen, B. E., Hoffmann, E. R.
& Pedersen, J. S. (2023).
Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns.
eLife,
12, Artikel e81224.
https://doi.org/10.7554/elife.81224
Liu, H., Micic, N.
, Miller, S., Crocoll, C. & Bjarnholt, N. (2023).
Species-specific dynamics of specialized metabolism in germinating sorghum grain revealed by temporal and tissue-resolved transcriptomics and metabolomics. Plant Physiology and Biochemistry,
196, 807-820.
https://doi.org/10.1016/j.plaphy.2023.02.031
Mühleip, A.
, Flygaard, R. K., Baradaran, R., Haapanen, O., Gruhl, T., Tobiasson, V., Marechal, A., Sharma, V. & Amunts, A. (2023).
Structural basis of mitochondrial membrane bending by the I-II-III2-IV2 supercomplex.
Nature,
615(7954), 934-938.
https://doi.org/10.1038/s41586-023-05817-y
Jayakodi, M., Golicz, A. A., Kreplak, J.
, Fechete, L. I., Angra, D., Bednář, P.
, Bornhofen, E., Zhang, H., Boussageon, R., Kaur, S., Cheung, K., Čížková, J., Gundlach, H., Hallab, A., Imbert, B., Keeble-Gagnère, G., Koblížková, A., Kobrlová, L., Krejčí, P.
... Andersen, S. U. (2023).
The giant diploid faba genome unlocks variation in a global protein crop.
Nature,
615(7953), 652-659.
https://doi.org/10.1038/s41586-023-05791-5
Christensen, B., Buitenhuis, A. J., Jacobsen, L. N., Ostenfeld, M. S. & Sørensen, E. S. (2023).
The Effect of Human and Bovine Milk Osteopontin on Intestinal Caco-2 Cells: A Transcriptome Comparison.
Nutrients,
15(5), Artikel 1166.
https://doi.org/10.3390/nu15051166
Kurihara, Y., Ekimoto, T., Gordon, C. T., Uchijima, Y., Sugiyama, R.
, Kitazawa, T., Iwase, A., Kotani, R., Asai, R., Pingault, V., Ikeguchi, M., Amiel, J. & Kurihara, H. (2023).
Mandibulofacial dysostosis with alopecia results from ETAR gain-of-function mutations via allosteric effects on ligand binding.
Journal of Clinical Investigation,
133(4), Artikel e151536.
https://doi.org/10.1172/JCI151536
Busato, S., Gordon, M., Chaudhari, M.
, Thorsgaard Jensen, I., Akyol, T. Y., Andersen, S. U. & Williams, C. (2023).
Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies.
Current Opinion in Plant Biology,
71, Artikel 102326.
https://doi.org/10.1016/j.pbi.2022.102326