Peer-reviewed articles

Publications from the department

Journal covers made by researchers from our department

Li, Z., Anankanbil, S., Pedersen, J. N., Nadzieja, M. & Guo, Z. (2023). Nanocellulose fractionated from TEMPO-mediated oxidation of cellulose as an energy-free ingredient for stabilizing Pickering emulsion. Biochemical Engineering Journal, 191, [ 108795]. https://doi.org/10.1016/j.bej.2022.108795

Mohammad-Beigi, H., Wijaya, W., Madsen, M., Hayashi, Y., Li, R., Maria Rovers, T. A., Jæger, T. C., Buell, A. K., Hougaard, A. B., Kirkensgaard, J. J. K., Westh, P., Ipsen, R. & Svensson, B. (2023). Association of caseins with β-lactoglobulin influenced by temperature and calcium ions: A multi-parameter analysis. Food Hydrocolloids, 137, [108373]. https://doi.org/10.1016/j.foodhyd.2022.108373

Alijanvand, S. H., Ladefoged, L. K., Zubrienė, A., Sakalauskas, A., Christiansen, G., Dudutiene, V., Schiøtt, B., Matulis, D., Smirnovas, V. & Otzen, D. E. (2023). Inhibitory effects of fluorinated benzenesulfonamides on insulin fibrillation. International Journal of Biological Macromolecules, 227, 590-600. https://doi.org/10.1016/j.ijbiomac.2022.12.105

Pirhaghi, M., Najarzadeh, Z., Moosavi-Movahedi, F., Shafizadeh, M., Mamashli, F., Atarod, D., Ghasemi, A., Morshedi, D., Meratan, A. A., Otzen, D. E. & Saboury, A. A. (2023). The anti-platelet drug ticlopidine inhibits FapC fibrillation and biofilm production: Highlighting its antibiotic activity. B B A - Proteins and Proteomics, 1871(2), 140883. [140883]. https://doi.org/10.1016/j.bbapap.2022.140883

Li, Z., Anankanbil, S., Li, L., Lyu, J., Nadzieja, M. & Guo, Z. (2023). Alkylsuccinylated oxidized cellulose-based amphiphiles as a novel multi-purpose ingredient for stabilizing O/W emulsions. Food Hydrocolloids, 134, [108014]. https://doi.org/10.1016/j.foodhyd.2022.108014

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Staulund, J., Song, P., Qi, H., Thrane, L., Duedahl, P., Weiss, T., Moers, C., Keller, A. K., Nørregaard, R., Pedersen, M., Leuvenink, H., Kjems, J., Jespersen, B. & Eijken, M. (2022). Assessing the quality of donor kidneys during normothermic machine perfusion using nanoparticle-based vitality sensors. Abstract from 3rd ECTORS meeting, Rotterdam, Netherlands.

Pierre-Ferre, S., Collins, B., Lukacsovich, D., Wen, SA., Chai, Y., Winterer, J., Auerbach, B., Li, M., Yan, J., Pedersen, L., Földy, C. & Brown, S. A. (2022). A single atypical phosphoswitch in specific SCN neurons gates winter seasonality in mice. Poster session presented at Society for Research on Biological Rhythms Biennial Conference, Amelia Island, Florida, United States.

Frank, M., Cortleven, A., Pěnčík, A., Novak, O. & Schmülling, T. (2022). The Photoperiod Stress Response in Arabidopsis thaliana Depends on Auxin Acting as an Antagonist to the Protectant Cytokinin. International Journal of Molecular Sciences , 23(6). https://doi.org/10.3390/ijms23062936

Martín-Rivada, Á., Guerra-Cantera, S., Campillo-Calatayud, A., Andrés-Esteban, E. M., Sánchez Holgado, M., Martos-Moreno, G., Pozo, J., Güemes, M., Soriano-Guillén, L., Pellicer, A., Oxvig, C., Frystyk, J., Chowen, J. A., Barrios, V. & Argente, J. (2022). Pappalysins and Stanniocalcins and Their Relationship With the Peripheral IGF Axis in Newborns and During Development. The Journal of clinical endocrinology and metabolism, 107(10), 2912-2924. https://doi.org/10.1210/clinem/dgac453

Keller, J. G., Mizielinski, K., Petersen, K. V., Stougaard, M., Knudsen, B. R. & Tesauro, C. (2022). Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples. Journal of visualized experiments : JoVE, (190). https://doi.org/10.3791/64484

Keller-Socin, J. G., Petersen, K. V., Knudsen, B. R. & Tesauro, C. (2022). Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer. In Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer InTechOpen. https://doi.org/doi.org/10.5772/intechopen.105758

Pirhaghi, M., Frank, S. A., Alam, P., Nielsen, J., Sereikaite, V., Gupta, A., Strømgaard, K., Andreasen, M., Sharma, D., Saboury, A. A. & Otzen, D. E. (2022). A penetratin-derived peptide reduces the membrane permeabilization and cell toxicity of α-synuclein oligomers. Journal of Biological Chemistry, 298(12), [102688]. https://doi.org/10.1016/j.jbc.2022.102688

Kjærgaard, M., Rasmussen, L. S., Vinther, J. N., Andersen, K. R., Andersen, E. S., Lorentzen, E., Thirup, S. S., Otzen, D. & Brodersen, D. E. (2022). A Semester-Long Learning Path Teaching Computational Skills via Molecular Graphics in PyMOL. The Biophysicist, 3(2), 106–114. https://doi.org/10.35459/tbp.2022.000219

He, J., Steffen, J. H., Thulstrup, P. W., Pedersen, J. N., Sauerland, M. B., Otzen, D. E., Hawkins, C. L., Gourdon, P., Davies, M. J. & Hägglund, P. (2022). Anastellin impacts on the processing of extracellular matrix fibronectin and stimulates release of cytokines from coronary artery smooth muscle cells. Scientific Reports, 12(1), 22051. https://doi.org/10.1038/s41598-022-26359-9

Zev, S., Ringel, M., Driller, R., Loll, B., Brück, T. & Major, D. T. (2022). Understanding the competing pathways leading to hydropyrene and isoelisabethatriene. Beilstein Journal of Organic Chemistry, 18, 972-978. https://doi.org/10.3762/bjoc.18.97

Salimi, M., Javadi, A. H., Nazari, M., Bamdad, S., Tabasi, F., Parsazadegan, T., Ayene, F., Karimian, M., Gholami-Mahtaj, L., Shadnia, S., Jamaati, H., Salimi, A. & Raoufy, M. R. (2022). Nasal Air Puff Promotes Default Mode Network Activity in Mechanically Ventilated Comatose Patients: A Noninvasive Brain Stimulation Approach. Neuromodulation: Technology at the Neural Interface, 25(8), 1351-1363. https://doi.org/10.1016/j.neurom.2021.11.003

Busato, S., Gordon, M., Chaudhari, M., Thorsgaard Jensen, I., Akyol, T. Y., Andersen, S. U. & Williams, C. (2022). Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies. Current Opinion in Plant Biology, 71. https://doi.org/10.1016/j.pbi.2022.102326

Maccio, U., Mihic, A., Lenggenhager, D., Kolm, I., Mittmann, C., Heikenwälder, M., Lorentzen, A. & Mihic-Probst, D. (2022). Hypoxia and Ezrin Expression in Primary Melanoma Have High Prognostic Relevance. International Journal of Molecular Sciences , 23(18), [10745]. https://doi.org/10.3390/ijms231810745

Schmauck-Medina, T., Molière, A., Lautrup, S., Zhang, J., Chlopicki, S., Madsen, H. B., Cao, S., Soendenbroe, C., Mansell, E., Vestergaard, M. B., Li, Z., Shiloh, Y., Opresko, P. L., Egly, J. M., Kirkwood, T., Verdin, E., Bohr, V. A., Cox, L. S., Stevnsner, T. ... Fang, E. F. (2022). New hallmarks of ageing: a 2022 Copenhagen ageing meeting summary. Aging, 14(16), 6829-6839. https://doi.org/10.18632/aging.204248

Zarrabian, M., Montiel, J., Sandal, N., Ferguson, S., Jin, H., Lin, Y. Y., Klingl, V., Marín, M., James, E. K., Parniske, M., Stougaard, J. & Andersen, S. U. (2022). A Promiscuity Locus Confers Lotus burttii Nodulation with Rhizobia from Five Different Genera. Molecular plant-microbe interactions : MPMI, 35(11), 1006-1017. https://doi.org/10.1094/MPMI-06-22-0124-R

Meisl, G., Xu, C. K., Taylor, J. D., Michaels, T. C. T., Levin, A., Otzen, D., Klenerman, D., Matthews, S., Linse, S., Andreasen, M. & Knowles, T. P. J. (2022). Uncovering the universality of self-replication in protein aggregation and its link to disease. Science Advances, 8(32), [eabn6831]. https://doi.org/10.1126/sciadv.abn6831

Lassen, L. B., Thomsen, M. S., Basso, E., Füchtbauer, E. M., Füchtbauer, A., Outeiro, T. F., Jensen, P. H. & Moos, T. (2022). Mutation of Tyrosine Sites in the Human Alpha-Synuclein Gene Induces Neurotoxicity in Transgenic Mice with Soluble Alpha-Synuclein Oligomer Formation. Cells, 11(22), [3673]. https://doi.org/10.3390/cells11223673

Petersen, K. V., Tesauro, C., Hede, M. S., Pages, C., Marcussen, L. B., Keller, J. G., Bugge, M., Holm, K., Bjergbæk, L., Stougaard, M., Wejse, C. & Knudsen, B. R. (2022). Rolling Circle Enhanced Detection of Specific Restriction Endonuclease Activities in Crude Cell Extracts. Sensors, 22(20), [7763]. https://doi.org/10.3390/s22207763

Overgaard, C. K., Tao, K., Zhang, S., Christensen, B. T., Blahovska, Z., Radutoiu, S., Kelly, S. & Dueholm, M. K. D. (2022). Application of ecosystem-specific reference databases for increased taxonomic resolution in soil microbial profiling. Frontiers in Microbiology, 13, [942396]. https://doi.org/10.3389/fmicb.2022.942396

Neumann, C., Rosenbaek, L. L., Flygaard, R. K., Habeck, M., Karlsen, J. L., Wang, Y., Lindorff-Larsen, K., Gad, H. H., Hartmann, R., Lyons, J. A., Fenton, R. A. & Nissen, P. (2022). Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity. The EMBO Journal, 41(23), [e110169]. https://doi.org/10.15252/embj.2021110169

Petriman, N. A., Loureiro-López, M., Taschner, M., Zacharia, N. K., Georgieva, M. M., Boegholm, N., Wang, J., Mourão, A., Russell, R. B., Andersen, J. S. & Lorentzen, E. (2022). Biochemically validated structural model of the 15-subunit intraflagellar transport complex IFT-B. The EMBO Journal, 41(24), [e112440]. https://doi.org/10.15252/embj.2022112440

Bush, J. A., Meyer, S. M., Fuerst, R., Tong, Y., Li, Y., Benhamou, R. I., Aikawa, H., Zanon, P. R. A., Gibaut, Q. M. R., Angelbello, A. J., Gendron, T. F., Zhang, Y. J., Petrucelli, L., Heick Jensen, T., Childs-Disney, J. L. & Disney, M. D. (2022). A blood-brain penetrant RNA-targeted small molecule triggers elimination of r(G₄C₂)^exp in c9ALS/FTD via the nuclear RNA exosome. Proceedings of the National Academy of Sciences of the United States of America, 119(48), [e2210532119]. https://doi.org/10.1073/pnas.2210532119

Rowe, T. B., Stafford, T. W., Fisher, D. C., Enghild, J. J., Quigg, J. M., Ketcham, R. A., Sagebiel, J. C., Hanna, R. & Colbert, M. W. (2022). Human Occupation of the North American Colorado Plateau ∼37,000 Years Ago. Frontiers in Ecology and Evolution, 10, [903795]. https://doi.org/10.3389/fevo.2022.903795

Blevins, A. S., Bassett, D. S., Scott, E. K. & Vanwalleghem, G. C. (2022). From calcium imaging to graph topology. Network Neuroscience, 6(4), 1125-1147. https://doi.org/10.1162/netn_a_00262

Neumann, C., Focht, D., Trampari, S., Lyons, J. A. & Nissen, P. (2022). Variations on a theme: Crystal forms of the amino-acid transporter MhsT. Acta Crystallographica Section F: Structural Biology Communications, 78(Part 8), 297-305. https://doi.org/10.1107/S2053230X22007154

Sheffer, M. M., Cordellier, M., Forman, M., Grewoldt, M., Hoffmann, K., Jensen, C., Kotz, M., Král, J., Kuss, A. W., Líznarová, E. & Uhl, G. (2022). Identification of sex chromosomes using genomic and cytogenetic methods in a range-expanding spider, Argiope bruennichi (Araneae: Araneidae). Biological Journal of The Linnean Society, 136(3), 405–416. https://doi.org/10.1093/biolinnean/blac039

Keller, J. G., Hymøller, K. M., Thorsager, M. E., Hansen, N. Y., Erlandsen, J. U., Tesauro, C., Simonsen, A. K. W., Andersen, A. B., Vandsø Petersen, K., Holm, L. L., Stougaard, M., Andresen, B. S., Kristensen, P., Frøhlich, R. & Knudsen, B. R. (2022). Topoisomerase 1 inhibits MYC promoter activity by inducing G-quadruplex formation. Nucleic Acids Research, 50(11), 6332-6342. https://doi.org/10.1093/nar/gkac482

Leslie, J. S., Hjeij, R., Vivante, A., Bearce, E. A., Dyer, L., Wang, J., Rawlins, L., Kennedy, J., Ubeyratna, N., Fasham, J., Irons, Z. H., Craig, S. B., Koenig, J., George, S., Pode-Shakked, B., Bolkier, Y., Barel, O., Mane, S., Frederiksen, K. K. ... Baple, E. L. (2022). Biallelic DAW1 variants cause a motile ciliopathy characterized by laterality defects and subtle ciliary beating abnormalities. Genetics in Medicine, 24(11), 2249-2261. https://doi.org/10.1016/j.gim.2022.07.019

Aagaard, A., Liu, S., Tregenza, T., Braad Lund, M., Schramm, A., Verhoeven, K. J. F., Bechsgaard, J. & Bilde, T. (2022). Adapting to climate with limited genetic diversity: Nucleotide, DNA methylation and microbiome variation among populations of the social spider Stegodyphus dumicola. Molecular Ecology, 31(22), 5765-5783. https://doi.org/10.1111/mec.16696

Kitazawa, T., Minoux, M., Ducret, S. & Rijli, F. M. (2022). Different Ectopic Hoxa2 Expression Levels in Mouse Cranial Neural Crest Cells Result in Distinct Craniofacial Anomalies and Homeotic Phenotypes. Journal of developmental biology, 10(1), [9]. https://doi.org/10.3390/jdb10010009

Pumo, G. M., Kitazawa, T. & Rijli, F. M. (2022). Epigenetic and Transcriptional Regulation of Spontaneous and Sensory Activity Dependent Programs During Neuronal Circuit Development. Frontiers in Neural Circuits, 16, 911023. https://doi.org/10.3389/fncir.2022.911023

Rattan, S. & Kaur, G. (2022). Nutrition, food and diet in health and longevity: we eat what we are. Nutrients, 14(5376). https://doi.org/10.3390/nu14245376

Harwood, S. L., Andersen, G. R. & Enghild, J. J. (2022). Recent cryogenic electron microscopy structures of human A2M may not be representative of the native protein. Proceedings of the National Academy of Sciences of the United States of America, 119(37), [e2210218119]. https://doi.org/10.1073/pnas.2210218119

Josipovic, N., Ebbesen, K. K., Zirkel, A., Danieli-Mackay, A., Dieterich, C., Kurian, L., Hansen, T. B. & Papantonis, A. (2022). circRAB3IP modulates cell proliferation by reorganizing gene expression and mRNA processing in a paracrine manner. RNA (New York, N.Y.), 28(11), 1481-1495. https://doi.org/10.1261/rna.079195.122

Grønnemose, A. L., Østerlund, E. C., Otzen, D. E. & Jørgensen, T. J. D. (2022). EGCG has Dual and Opposing Effects on the N-terminal Region of Self-associating α-synuclein Oligomers. Journal of Molecular Biology, 434(23), [167855]. https://doi.org/10.1016/j.jmb.2022.167855

Khateb, H., Sørensen, R. S., Cramer, K., Eklund, A. S., Kjems, J., Meyer, R. L., Jungmann, R. & Sutherland, D. S. (2022). The Role of Nanoscale Distribution of Fibronectin in the Adhesion of Staphylococcus aureus Studied by Protein Patterning and DNA-PAINT. ACS Nano, 16(7), 10392-10403. https://doi.org/10.1021/acsnano.2c00630

Kobberø, S. D., Gajhede, M., Mirza, O. A., Kløverpris, S., Kjær, T. R., Mikkelsen, J. H., Boesen, T. & Oxvig, C. (2022). Structure of the proteolytic enzyme PAPP-A with the endogenous inhibitor stanniocalcin-2 reveals its inhibitory mechanism. Nature Communications, 13(1), [6084]. https://doi.org/10.1038/s41467-022-33698-8

Fuchs, E., Rudnik-Jansen, I., Dinesen, A., Selnihhin, D., Mandrup, O. A., Thiam, K., Kjems, J., Pedersen, F. S. & Howard, K. A. (2022). An albumin-angiotensin converting enzyme 2-based SARS-CoV-2 decoy with FcRn-driven half-life extension. Acta Biomaterialia, 153, 411-418. https://doi.org/10.1016/j.actbio.2022.09.048

Yamamoto, K., Scavenius, C., Meschis, M. M., Gremida, A. M. E., Mogensen, E. H., Thøgersen, I. B., Bonelli, S., Scilabra, S. D., Jensen, A., Santamaria, S., Ahnström, J., Bou-Gharios, G., Enghild, J. J. & Nagase, H. (2022). A top-down approach to uncover the hidden ligandome of low-density lipoprotein receptor-related protein 1 in cartilage. Matrix Biology, 112, 190-218. https://doi.org/10.1016/j.matbio.2022.08.007

Harwood, S. L., Diep, K., Nielsen, N. S., Jensen, K. T. & Enghild, J. J. (2022). The conformational change of the protease inhibitor α₂-macroglobulin is triggered by the retraction of the cleaved bait region from a central channel. Journal of Biological Chemistry, 298(8), [102230]. https://doi.org/10.1016/j.jbc.2022.102230

Lorentzen, J., Pedersen, D. V., Gadeberg, T. A. F. & Andersen, G. R. (2022). Structure determination of an unstable macromolecular complex enabled by nanobody-peptide bridging. Protein Science, 31(10), [e4432]. https://doi.org/10.1002/pro.4432

Ung, K. L., Winkler, M., Schulz, L., Kolb, M., Janacek, D. P., Dedic, E., Stokes, D. L., Hammes, U. Z. & Pedersen, B. P. (2022). Structures and mechanism of the plant PIN-FORMED auxin transporter. Nature, 609(7927), 605-610. https://doi.org/10.1038/s41586-022-04883-y

Nayeri, Z., Aliakbari, F., Afzali, F., Parsafar, S., Gharib, E., Otzen, D. E. & Morshedi, D. (2022). Characterization of exogenous αSN response genes and their relation to Parkinson's disease using network analyses. Frontiers in Pharmacology, 13, [966760]. https://doi.org/10.3389/fphar.2022.966760

Skoven, C. S., Tomasevic, L., Kvitsiani, D., Pakkenberg, B., Dyrby, T. B. & Siebner, H. R. (2022). Dose-response relationship between the variables of unilateral optogenetic stimulation and transcallosal evoked responses in rat motor cortex. Frontiers in Neuroscience, 16, [968839]. https://doi.org/10.3389/fnins.2022.968839

Hangiu, O., Compte, M., Dinesen, A., Navarro, R., Tapia-Galisteo, A., Mandrup, O. A., Erce-Llamazares, A., Lázaro-Gorines, R., Nehme-Álvarez, D., Domínguez-Alonso, C., Harwood, S. L., Alfonso, C., Blanco, B., Rubio-Pérez, L., Jiménez-Reinoso, A., Díez-Alonso, L., Blanco, F. J., Sanz, L., Howard, K. A. & Álvarez-Vallina, L. (2022). Tumor targeted 4-1BB agonist antibody-albumin fusions with high affinity to FcRn induce anti-tumor immunity without toxicity. iScience, 25(9), [104958]. https://doi.org/10.1016/j.isci.2022.104958

Larsen, K. E. (Producer). (2022). Sus scrofa domesticus cerebral dopamine neurotrophic factor (CDNF) mRNA, complete cds. GenBank Access No. OK268246. Dataset

Larsen, K. E. (Producer). (2022). Sus scrofa domesticus mesenecephalic astrocyte-derived neurotrophic factor (MANF) gene, promoter region and partial cds. GenBank Access No. OK337617. Dataset

Larsen, K. E. (Producer). (2022). Balaena mysticetus Nei-like DNA glycosylase 3 (NEIL3) mRNA, partial cds. GenBank Access No. OL770101. Dataset

Otzen, D. E. (2022). Functional amyloid in a lipid-like environment: a merry dance of many steps. Essays in Biochemistry, 66(7). https://doi.org/10.1042/EBC20220062

Fonager, S. V., Winther, G., Wittenborn, T. R., Jensen, L., Fahlquist-Hagert, C., Hansen, L. A., Füchtbauer, E-M., Romero-Ramos, M. & Degn, S. E. (2022). Increased maternofoetal transfer of antibodies in a murine model of systemic lupus erythematosus, but no immune activation and neuroimmune sequelae in offspring. Journal of Neuroimmunology, 370, [577927]. https://doi.org/10.1016/j.jneuroim.2022.577927

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Revised 13.01.2023

Lisbeth Heilesen

Department of Molecular Biology and Genetics

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