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Peer-reviewed publications at MBG - 2025

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Rashidi, A., Füchtbauer, E. M., Vahabzadeh, Z., Soleimani, F., Rahimi, K., Nikkhoo, B., Fakhari, S., Erfan, M. B. K., Azarnezhad, A., Pooladi, A., Soheili, F. & Fathi, F. (2025). CRISPR/Cas9-mediated knockout of DYRK1B in triple-negative breast cancer cells: implications for cell proliferation, apoptosis, and therapeutic sensitivity. Biochemical Engineering Journal, 213, Article 109553. https://doi.org/10.1016/j.bej.2024.109553
Luige, J., Conrad, T., Armaos, A., Louloupi, A., Vincent, A., Meierhofer, D., Gajhede, M., Tartaglia, G. G. & Ørom, U. A. V. (2025). Design and characterization of G-quadruplex RNA aptamers reveal RNA-binding by KDM5 lysine demethylases. Computational and Structural Biotechnology Journal, 27, 2719-2729. https://doi.org/10.1016/j.csbj.2025.06.027
Sarrette, B., Luu, T. B., Johansson, A., Fliegmann, J., Pouzet, C., Pichereaux, C., Remblière, C., Sauviac, L., Carles, N., Amblard, E., Guyot, V., Bonhomme, M., Cullimore, J., Gough, C., Jacquet, C. & Pauly, N. (2025). Medicago truncatula SOBIR1 controls pathogen immunity and specificity in the Rhizobium-legume symbiosis. Plant, Cell and Environment, 48(1), 32-50. https://doi.org/10.1111/pce.15071
Nel, L., Thaysen, K., Jamecna, D., Olesen, E., Langer, J., Frain, K. M., Szomek, M., Höglinger, D., Wüstner, D. & Pedersen, B. P. (2025). Structural and biochemical analysis of ligand binding in yeast Niemann–Pick type C1–related protein. Life Science Alliance, 8(1), Article e202402990. https://doi.org/10.26508/lsa.202402990
Nguyen, M. T. A., Andersen, E. S. & Pothoulakis, G. (2025). Construction of Small Genes with Repetitive Elements Using Oligo Extension and Golden Gate Assembly. In D. Schindler (Ed.), Golden Gate Cloning (pp. 219-227). Humana Press. https://doi.org/10.1007/978-1-0716-4220-7_12
Teixeira, L. M. C., Paiva, P., Johansen, M. B., Sommerfeldt, A., Petersen, A. R., Rotilio, L., Sandahl, A., Morth, J. P., Westh, P., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Hydrolysis of the Urethane Bond Catalyzed by Pseudomonas sp. MIS38 Lipase: A QM/MM Mechanistic Insight. ACS Catalysis, 15, 14728-14740. https://doi.org/10.1021/acscatal.5c03228
da Fonseca Junior, A. M., Ispada, J., de Lima , C. B., Trabuco do Amaral, D., Juan Ross, P., Kadarmideen, H. & Pecora Milazzoto, M. (2025). Multiomics integration uncovers metabolic control of H3K27ac in bovine inner cell masses. Biology of Reproduction, 1-10.
Baindoor, S., Gibriel, H. A. Y., Kool, L., Su, J., Demaegd, K. C., Venø, M. T., Van Den Berg, L. H., Kjems, J., Van Es, M. A. & Prehn, J. H. M. (2025). Serum small non-coding RNA define molecular subtypes in amyotrophic lateral sclerosis. Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration. Advance online publication. https://doi.org/10.1080/21678421.2025.2574690
Paiva, P., Teixeira, L. M. C., Ferreira, P., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Transforming Computational Power into Environmental Solutions: HPC-driven Research on Urethanase-mediated Plastic Degradation. Procedia Computer Science, 267, 207-217. https://doi.org/10.1016/j.procs.2025.08.247
Paiva, P., Teixeira, L. M. C., Wei, R., Liu, W., Weber, G., Morth, J. P., Westh, P., Petersen, A. R., Johansen, M. B., Sommerfeldt, A., Sandahl, A., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Unveiling the enzymatic pathway of UMG-SP2 urethanase: insights into polyurethane degradation at the atomic level. Chemical Science, 16(5), 2437-2452. https://doi.org/10.1039/d4sc06688j

Peer-reviewed publications at MBG - all years

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Golan, N., Parizat, A., Tabachnikov, O., Barnea, E., Olsen, W. P., Otzen, D. E. & Landau, M. (2025). Resilience and Charge-Dependent Fibrillation of functional amyloid: Interactions of Pseudomonas Biofilm-Associated FapB and FapC Amyloids. The Journal of Biological Chemistry, 301(2), Article 108096. https://doi.org/10.1016/j.jbc.2024.108096
Hollingshead, S., McVicker, G., Nielsen, M. R., Zhang, Y., Pilla, G., Jones, R. A., Thomas, J. C., Johansen, S. E. H., Exley, R. M., Brodersen, D. E. & Tang, C. M. (2025). Shared mechanisms of enhanced plasmid maintenance and antibiotic tolerance mediated by the VapBC toxin:antitoxin system. mBio, 16(2), e0261624. https://doi.org/10.1128/mbio.02616-24
Malham, M., Vestergaard, M. V., Bataillon, T., Villesen, P., Dempfle, A., Bang, C., Engsbro, A. L., Jakobsen, C., Franke, A., Wewer, V., Thingholm, L. B. & Petersen, A. M. (2025). The Composition of the Fecal and Mucosa-adherent Microbiota Varies Based on Age and Disease Activity in Ulcerative Colitis. Inflammatory Bowel Diseases, 31(2), 501-513. https://doi.org/10.1093/ibd/izae179
Behrens, T., Balasubramanian, J., Secher, J. B.-M., Ivask, M., Kadarmideen, H. & Rabaglino, M. (2025). Effects of in vitro embryo production on the epigenomic profiles of day 15 bovine conceptus. Reproduction, Fertility and Development, 37(1), Article 114. https://doi.org/10.1071/RDv37n1Ab114
Sall, K. K., Foldager, L., Delf, C., Christensen, S. J., Agerley, M. N., Havn, K. T. & Pedersen, C. (2025). Control of neonatal diarrhea in piglets with reduced antibiotic use by application of a complementary feed - a randomized controlled farm trial. Veterinary Sciences, 12(1), Article 42. https://doi.org/10.3390/vetsci12010042
Mohr, M., Kozikowska, J., Petryszyn, Z., Ostrowska, K., Golusińska-Kardach, E., Golusiński, W., Suchorska, W. & Kulcenty, K. (2025). Interplay between hypoxia, RNA methylation, and HPV in head and neck squamous cell carcinomas: drivers of oncogenesis and resistance to therapy . EXCLI Journal, 24, 1767-1796. https://doi.org/10.17179/excli2025-8834
Car, J., Ong, Q. C., Erlikh Fox, T., Leightley, D., Kemp, S. J., Švab, I., Tsoi, K. K. F., Sam, A. H., Kent, F. M., Hertelendy, A. J., Longhurst, C. A., Powell, J., Hamdy, H., Nguyen, H. V. Q., Aoun Bahous, S., Wang, M., Baumgartner, M., Mahendradhata, Y., Popovic, N. ... Digital Health Systems Collaborative (2025). The Digital Health Competencies in Medical Education Framework: An International Consensus Statement Based on a Delphi Study. JAMA network open, 8(1), Article e2453131. https://doi.org/10.1001/jamanetworkopen.2024.53131
Ho, K. H., Trapp, M., Guida, C., Ivanova, E. L., De Jaime-Soguero, A., Jabali, A., Thomas, C., Salasova, A., Bernatík, O., Salio, C., Horschitz, S., Hasselblatt, M., Sassoe-Pognetto, M., Čajánek, L., Ishikawa, H., Schroten, H., Schwerk, C., Acebrón, S. P., Angel, P. ... Patrizi, A. (2025). Activation of Wnt/β-catenin signaling is critical for the tumorigenesis of choroid plexus. Neuro-Oncology, 27(1), 106-122. https://doi.org/10.1093/neuonc/noae176, https://doi.org/10.1093/neuonc/noae176
Bøtkjær, J. A., Poulsen, L. L. C., Noer, P. R., Grøndahl, M. L., Englund, A. L. M., Franks, S., Hardy, K., Oxvig, C. & Andersen, C. Y. (2025). Dynamics of IGF Signaling During the Ovulatory Peak in Women Undergoing Ovarian Stimulation. The Journal of clinical endocrinology and metabolism, 110(1), e160-e167. https://doi.org/10.1210/clinem/dgae132
Biswas, D., Liu, Y. H., Herrero, J., Wu, Y., Moore, D. A., Karasaki, T., Grigoriadis, K., Lu, W. T., Veeriah, S., Naceur-Lombardelli, C., Magno, N., Ward, S., Frankell, A. M., Hill, M. S., Colliver, E., de Carné Trécesson, S., East, P., Malhi, A., Snell, D. M. ... TRACERx Consortium (2025). Prospective validation of ORACLE, a clonal expression biomarker associated with survival of patients with lung adenocarcinoma. Nature Cancer, 6(1), 86-101. Article 10110. https://doi.org/10.1038/s43018-024-00883-1
Rashidi, A., Füchtbauer, E. M., Vahabzadeh, Z., Soleimani, F., Rahimi, K., Nikkhoo, B., Fakhari, S., Erfan, M. B. K., Azarnezhad, A., Pooladi, A., Soheili, F. & Fathi, F. (2025). CRISPR/Cas9-mediated knockout of DYRK1B in triple-negative breast cancer cells: implications for cell proliferation, apoptosis, and therapeutic sensitivity. Biochemical Engineering Journal, 213, Article 109553. https://doi.org/10.1016/j.bej.2024.109553
Luige, J., Conrad, T., Armaos, A., Louloupi, A., Vincent, A., Meierhofer, D., Gajhede, M., Tartaglia, G. G. & Ørom, U. A. V. (2025). Design and characterization of G-quadruplex RNA aptamers reveal RNA-binding by KDM5 lysine demethylases. Computational and Structural Biotechnology Journal, 27, 2719-2729. https://doi.org/10.1016/j.csbj.2025.06.027
Sarrette, B., Luu, T. B., Johansson, A., Fliegmann, J., Pouzet, C., Pichereaux, C., Remblière, C., Sauviac, L., Carles, N., Amblard, E., Guyot, V., Bonhomme, M., Cullimore, J., Gough, C., Jacquet, C. & Pauly, N. (2025). Medicago truncatula SOBIR1 controls pathogen immunity and specificity in the Rhizobium-legume symbiosis. Plant, Cell and Environment, 48(1), 32-50. https://doi.org/10.1111/pce.15071
Nel, L., Thaysen, K., Jamecna, D., Olesen, E., Langer, J., Frain, K. M., Szomek, M., Höglinger, D., Wüstner, D. & Pedersen, B. P. (2025). Structural and biochemical analysis of ligand binding in yeast Niemann–Pick type C1–related protein. Life Science Alliance, 8(1), Article e202402990. https://doi.org/10.26508/lsa.202402990
Nguyen, M. T. A., Andersen, E. S. & Pothoulakis, G. (2025). Construction of Small Genes with Repetitive Elements Using Oligo Extension and Golden Gate Assembly. In D. Schindler (Ed.), Golden Gate Cloning (pp. 219-227). Humana Press. https://doi.org/10.1007/978-1-0716-4220-7_12
Teixeira, L. M. C., Paiva, P., Johansen, M. B., Sommerfeldt, A., Petersen, A. R., Rotilio, L., Sandahl, A., Morth, J. P., Westh, P., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Hydrolysis of the Urethane Bond Catalyzed by Pseudomonas sp. MIS38 Lipase: A QM/MM Mechanistic Insight. ACS Catalysis, 15, 14728-14740. https://doi.org/10.1021/acscatal.5c03228
da Fonseca Junior, A. M., Ispada, J., de Lima , C. B., Trabuco do Amaral, D., Juan Ross, P., Kadarmideen, H. & Pecora Milazzoto, M. (2025). Multiomics integration uncovers metabolic control of H3K27ac in bovine inner cell masses. Biology of Reproduction, 1-10.
Baindoor, S., Gibriel, H. A. Y., Kool, L., Su, J., Demaegd, K. C., Venø, M. T., Van Den Berg, L. H., Kjems, J., Van Es, M. A. & Prehn, J. H. M. (2025). Serum small non-coding RNA define molecular subtypes in amyotrophic lateral sclerosis. Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration. Advance online publication. https://doi.org/10.1080/21678421.2025.2574690
Paiva, P., Teixeira, L. M. C., Ferreira, P., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Transforming Computational Power into Environmental Solutions: HPC-driven Research on Urethanase-mediated Plastic Degradation. Procedia Computer Science, 267, 207-217. https://doi.org/10.1016/j.procs.2025.08.247
Paiva, P., Teixeira, L. M. C., Wei, R., Liu, W., Weber, G., Morth, J. P., Westh, P., Petersen, A. R., Johansen, M. B., Sommerfeldt, A., Sandahl, A., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Unveiling the enzymatic pathway of UMG-SP2 urethanase: insights into polyurethane degradation at the atomic level. Chemical Science, 16(5), 2437-2452. https://doi.org/10.1039/d4sc06688j