Charmouh, A. P., Porsborg, P. S., Hansen, L. T., Besenbacher, S., Boeg Winge, S., Almstrup, K.
, Hobolth, A., Bataillon, T. & Schierup, M. H. (2025).
Estimating Gene Conversion Tract Length and Rate From PacBio HiFi Data.
Molecular Biology and Evolution,
42(2), Article msaf019.
https://doi.org/10.1093/molbev/msaf019
Pitfield, J., Brix, F., Tang, Z., Slavensky, A. M.
, Rønne, N., Christiansen, M. P. V. & Hammer, B. (2025).
Augmentation of Universal Potentials for Broad Applications.
Physical Review Letters,
134(5), Article 056201.
https://doi.org/10.1103/PhysRevLett.134.056201
Kjær, M. B., Jørgensen, A. G., Fjelstrup, S., Dupont, D. M., Bus, C., Eriksen, P. L., Thomsen, K. L., Risikesan, J., Nielsen, S., Wernberg, C. W., Lauridsen, M. M., Bugianesi, E., Rosso, C.
, Grønbæk, H. & Kjems, J. (2025).
Diagnosis and Staging of Metabolic Dysfunction-Associated Steatotic Liver Disease Using Biomarker-Directed Aptamer Panels.
Biomolecules,
15(2), Article 255.
https://doi.org/10.3390/biom15020255
Christensen, B., Krüger, T. F., Hjorth, T. P., Buhl, E. H. & Sørensen, E. S. (2025).
Milk osteopontin mediates zinc uptake in intestinal cells in the presence of phytic acid.
International Dairy Journal,
161, Article 106113.
https://doi.org/10.1016/j.idairyj.2024.106113
Subrahmaniam, H. J., Pico, X.
, Bataillon, T., Salomonsen, C. L., Glasius, M. & Ehlers, B. (2025).
Natural variation in root exudate composition in the genetically structured Arabidopsis thaliana in the Iberian Peninsula.
New Phytologist,
245(4), 1437-1449.
https://doi.org/10.1111/nph.20314
Golan, N., Parizat, A., Tabachnikov, O., Barnea, E., Olsen, W. P.
, Otzen, D. E. & Landau, M. (2025).
Resilience and Charge-Dependent Fibrillation of functional amyloid: Interactions of Pseudomonas Biofilm-Associated FapB and FapC Amyloids.
The Journal of Biological Chemistry,
301(2), Article 108096.
https://doi.org/10.1016/j.jbc.2024.108096
Hollingshead, S., McVicker, G.
, Nielsen, M. R., Zhang, Y., Pilla, G., Jones, R. A., Thomas, J. C.
, Johansen, S. E. H., Exley, R. M.
, Brodersen, D. E. & Tang, C. M. (2025).
Shared mechanisms of enhanced plasmid maintenance and antibiotic tolerance mediated by the VapBC toxin:antitoxin system.
mBio,
16(2), e0261624.
https://doi.org/10.1128/mbio.02616-24
Malham, M., Vestergaard, M. V.
, Bataillon, T., Villesen, P., Dempfle, A., Bang, C., Engsbro, A. L., Jakobsen, C., Franke, A., Wewer, V.
, Thingholm, L. B. & Petersen, A. M. (2025).
The Composition of the Fecal and Mucosa-adherent Microbiota Varies Based on Age and Disease Activity in Ulcerative Colitis.
Inflammatory Bowel Diseases,
31(2), 501-513.
https://doi.org/10.1093/ibd/izae179
Eg Gadegaard, I. S., Eskildsen, M. H., Østergaard, S. K., Nielsen, J. L.
& Rasmussen, J. T. (2025).
Xanthine oxidase-lactoperoxidase system: Dose-dependent antibacterial effects and global gene expression changes in infant oral microbiota.
Food Research International,
201, Article 115596.
https://doi.org/10.1016/j.foodres.2024.115596
Behrens, T., Balasubramanian, J., Secher, J. B.-M., Ivask, M.
, Kadarmideen, H. & Rabaglino, M. (2025).
Effects of in vitro embryo production on the epigenomic profiles of day 15 bovine conceptus.
Reproduction, Fertility and Development,
37(1), Article 114.
https://doi.org/10.1071/RDv37n1Ab114
Boonkaew, S., Teodori, L., Vendelbo, M. H., Kjems, J. & Ferapontova, E. E. (2025).
Nanobodies' duo facilitates ultrasensitive serum HER-2/neu immunoassays via enhanced avidity interactions.
Analytica Chimica Acta,
1335, Article 343472.
https://doi.org/10.1016/j.aca.2024.343472
Yuan, H., Mitchell, C. W., Ferenbach, A. T., Bonati, M. T., Feresin, A., Benke, P. J., Tan, Q. K. G.
& van Aalten, D. M. F. (2025).
Exploiting O-GlcNAc dyshomeostasis to screen O-GlcNAc transferase intellectual disability variants.
Stem Cell Reports,
20(1), 102380. Article 102380.
https://doi.org/10.1016/j.stemcr.2024.11.010
Sall, K. K.
, Foldager, L., Delf, C., Christensen, S. J., Agerley, M. N., Havn, K. T. & Pedersen, C. (2025).
Control of neonatal diarrhea in piglets with reduced antibiotic use by application of a complementary feed - a randomized controlled farm trial.
Veterinary Sciences,
12(1), Article 42.
https://doi.org/10.3390/vetsci12010042
Broksø, A. D., Bendixen, L., Fammé, S., Mikkelsen, K., Jensen, T. I. & Bak, R. O. (2025).
Orthogonal transcriptional modulation and gene editing using multiple CRISPR/Cas systems.
Molecular Therapy,
33(1), 71-89.
https://doi.org/10.1016/j.ymthe.2024.11.024
Mohr, M., Kozikowska, J.
, Petryszyn, Z., Ostrowska, K., Golusińska-Kardach, E., Golusiński, W., Suchorska, W. & Kulcenty, K. (2025).
Interplay between hypoxia, RNA methylation, and HPV in head and neck squamous cell carcinomas: drivers of oncogenesis and resistance to therapy .
EXCLI Journal,
24, 1767-1796.
https://doi.org/10.17179/excli2025-8834
Car, J., Ong, Q. C., Erlikh Fox, T., Leightley, D., Kemp, S. J., Švab, I., Tsoi, K. K. F., Sam, A. H., Kent, F. M., Hertelendy, A. J., Longhurst, C. A., Powell, J., Hamdy, H., Nguyen, H. V. Q., Aoun Bahous, S., Wang, M., Baumgartner, M., Mahendradhata, Y., Popovic, N. ... Digital Health Systems Collaborative (2025).
The Digital Health Competencies in Medical Education Framework: An International Consensus Statement Based on a Delphi Study.
JAMA network open,
8(1), Article e2453131.
https://doi.org/10.1001/jamanetworkopen.2024.53131
Ho, K. H., Trapp, M., Guida, C., Ivanova, E. L., De Jaime-Soguero, A., Jabali, A., Thomas, C.
, Salasova, A., Bernatík, O., Salio, C., Horschitz, S., Hasselblatt, M., Sassoe-Pognetto, M., Čajánek, L., Ishikawa, H., Schroten, H., Schwerk, C., Acebrón, S. P., Angel, P. ... Patrizi, A. (2025).
Activation of Wnt/β-catenin signaling is critical for the tumorigenesis of choroid plexus.
Neuro-Oncology,
27(1), 106-122.
https://doi.org/10.1093/neuonc/noae176,
https://doi.org/10.1093/neuonc/noae176
Bøtkjær, J. A., Poulsen, L. L. C.
, Noer, P. R., Grøndahl, M. L., Englund, A. L. M., Franks, S., Hardy, K.
, Oxvig, C. & Andersen, C. Y. (2025).
Dynamics of IGF Signaling During the Ovulatory Peak in Women Undergoing Ovarian Stimulation.
The Journal of clinical endocrinology and metabolism,
110(1), e160-e167.
https://doi.org/10.1210/clinem/dgae132
Biswas, D., Liu, Y. H., Herrero, J., Wu, Y., Moore, D. A., Karasaki, T., Grigoriadis, K., Lu, W. T., Veeriah, S., Naceur-Lombardelli, C., Magno, N., Ward, S., Frankell, A. M., Hill, M. S., Colliver, E., de Carné Trécesson, S., East, P., Malhi, A., Snell, D. M. ... TRACERx Consortium (2025).
Prospective validation of ORACLE, a clonal expression biomarker associated with survival of patients with lung adenocarcinoma.
Nature Cancer,
6(1), 86-101. Article 10110.
https://doi.org/10.1038/s43018-024-00883-1
Prip, F., Lamy, P., Lindskrog, S. V., Strandgaard, T., Nordentoft, I., Birkenkamp-Demtröder, K., Birkbak, N. J., Kristjánsdóttir, N., Kjær, A., Andreasen, T. G., Ahrenfeldt, J., Pedersen, J. S., Rasmussen, A. M., Hermann, G. G., Mogensen, K., Petersen, A. C., Hartmann, A., Grimm, M. O., Horstmann, M. ... UROMOL Consortium (2025).
Comprehensive genomic characterization of early-stage bladder cancer.
Nature Genetics,
57(1), 115-125. Article 2301.
https://doi.org/10.1038/s41588-024-02030-z
Rashidi, A.
, Füchtbauer, E. M., Vahabzadeh, Z., Soleimani, F., Rahimi, K., Nikkhoo, B., Fakhari, S., Erfan, M. B. K., Azarnezhad, A., Pooladi, A., Soheili, F. & Fathi, F. (2025).
CRISPR/Cas9-mediated knockout of DYRK1B in triple-negative breast cancer cells: implications for cell proliferation, apoptosis, and therapeutic sensitivity.
Biochemical Engineering Journal,
213, Article 109553.
https://doi.org/10.1016/j.bej.2024.109553
Luige, J., Conrad, T., Armaos, A., Louloupi, A.
, Vincent, A., Meierhofer, D., Gajhede, M., Tartaglia, G. G.
& Ørom, U. A. V. (2025).
Design and characterization of G-quadruplex RNA aptamers reveal RNA-binding by KDM5 lysine demethylases.
Computational and Structural Biotechnology Journal,
27, 2719-2729.
https://doi.org/10.1016/j.csbj.2025.06.027
Gadegaard, I. S. E., Madsen, C. M., Johansen, P. M.
& Rasmussen, J. T. (2025).
Distribution, activity, and storage of xanthine oxidase in bovine milk fractions.
International Dairy Journal,
160, Article 106091.
https://doi.org/10.1016/j.idairyj.2024.106091
Sarrette, B.
, Luu, T. B., Johansson, A., Fliegmann, J., Pouzet, C., Pichereaux, C., Remblière, C., Sauviac, L., Carles, N., Amblard, E., Guyot, V., Bonhomme, M., Cullimore, J., Gough, C., Jacquet, C. & Pauly, N. (2025).
Medicago truncatula SOBIR1 controls pathogen immunity and specificity in the Rhizobium-legume symbiosis.
Plant, Cell and Environment,
48(1), 32-50.
https://doi.org/10.1111/pce.15071
Nel, L., Thaysen, K., Jamecna, D.
, Olesen, E., Langer, J.
, Frain, K. M., Szomek, M., Höglinger, D., Wüstner, D.
& Pedersen, B. P. (2025).
Structural and biochemical analysis of ligand binding in yeast Niemann–Pick type C1–related protein.
Life Science Alliance,
8(1), Article e202402990.
https://doi.org/10.26508/lsa.202402990
Shiraz, M. G., Nielsen, J., Widmann, J., Chung, K. H. K., Davis, T. P.
, Rasmussen, C., Scavenius, C., Enghild, J. J., Martin-Gallausiaux, C., Singh, Y., Javed, I.
& Otzen, D. E. (2025).
Young rat microbiota extracts strongly inhibit fibrillation of α-synuclein and protect neuroblastoma cells and zebrafish against α-synuclein toxicity.
Molecules and Cells,
48(1), Article 100161.
https://doi.org/10.1016/j.mocell.2024.100161
Pedersen, E. M., Steinbach, J., Pedersen, C. B., Schork, A. J., Krebs, M. D.
, Vilhjálmsson, B. J. & Privé, F. (2025).
Automatic detection of n-degree family members.
Frontiers in Genetics,
16, Article 1708315.
https://doi.org/10.3389/fgene.2025.1708315
Jensen, R. K., Miehe, M., Gandini, R., Jørgensen, M. H., Spillner, E. & Andersen, G. R. (2025).
Cryo-EM Structure of FcεRI Bound IgE Reveals Multiple Defined Conformations of the Fab-Fc Hinge.
Allergy: European Journal of Allergy and Clinical Immunology. Advance online publication.
https://doi.org/10.1111/all.70132
Myrup Holst, C., Esperon-Abril, I., Bryske Juhl, F., Jakobsgaard, J. E., Kristiansen, J. B., Vissing, K. & Stevnsner, T. (2025).
Effect of prolonged voluntary wheel running on oxidative stress and defence mechanisms in cortex and hippocampus of healthy female rats.
Experimental Physiology. Advance online publication.
https://doi.org/10.1113/EP092815
Walpole, S.
, Santiago-Vela, M. I., Birkedal, U.
, Hong, Z., Ros, X. B. D., van Overeem Hansen, T. & Wadt, K. A. W. (2025).
Functional Analysis and Clinical Data Reclassify the DICER1 c.4206+1G>C Variant, Leading to Exon 22 Skipping, as Likely Pathogenic.
Clinical Genetics. Advance online publication.
https://doi.org/10.1111/cge.70110
Wakabayashi, T.
, Andersen, S. U., Tanaka, S., Sato, S., Kawaguchi, M., Kato, K. & Setoguchi, H. (2025).
Genome-wide association study identifies candidate genes contributing to flowering time variation in Lotus japonicus in Japan.
Plant Biotechnology,
42(1), 17-29.
https://doi.org/10.5511/plantbiotechnology.24.1023a
Teixeira, L. M. C., Paiva, P.
, Johansen, M. B., Sommerfeldt, A., Petersen, A. R., Rotilio, L.
, Sandahl, A., Morth, J. P., Westh, P.
, Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025).
Hydrolysis of the Urethane Bond Catalyzed by Pseudomonas sp. MIS38 Lipase: A QM/MM Mechanistic Insight.
ACS Catalysis,
15, 14728-14740.
https://doi.org/10.1021/acscatal.5c03228
da Fonseca Junior, A. M., Ispada, J., de Lima , C. B., Trabuco do Amaral, D., Juan Ross, P.
, Kadarmideen, H. & Pecora Milazzoto, M. (2025).
Multiomics integration uncovers metabolic control of H3K27ac in bovine inner cell masses.
Biology of Reproduction, 1-10.
Baindoor, S., Gibriel, H. A. Y., Kool, L.
, Su, J., Demaegd, K. C., Venø, M. T., Van Den Berg, L. H.
, Kjems, J., Van Es, M. A. & Prehn, J. H. M. (2025).
Serum small non-coding RNA define molecular subtypes in amyotrophic lateral sclerosis.
Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration. Advance online publication.
https://doi.org/10.1080/21678421.2025.2574690
Selten, G.
, Gómez-Repollés, A., Lamouche, F., Radutoiu, S. & de Jonge, R. (2025).
SyFi: generating and using sequence fingerprints to distinguish SynCom isolates.
Microbial Genomics,
11(9), Article 001461.
https://doi.org/10.1099/mgen.0.001461
Paiva, P., Teixeira, L. M. C., Ferreira, P.
, Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025).
Transforming Computational Power into Environmental Solutions: HPC-driven Research on Urethanase-mediated Plastic Degradation.
Procedia Computer Science,
267, 207-217.
https://doi.org/10.1016/j.procs.2025.08.247
Paiva, P., Teixeira, L. M. C., Wei, R., Liu, W., Weber, G., Morth, J. P., Westh, P., Petersen, A. R., Johansen, M. B., Sommerfeldt, A., Sandahl, A.
, Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025).
Unveiling the enzymatic pathway of UMG-SP2 urethanase: insights into polyurethane degradation at the atomic level.
Chemical Science,
16(5), 2437-2452.
https://doi.org/10.1039/d4sc06688j
Etzerodt, A., Mikkelsen, J. H., Torvund-Jensen, M., Hennig, D.
, Boesen, T., Graversen, J. H.
, Moestrup, S. K., Kollman, J. M.
& Andersen, C. B. F. (2024).
The Cryo-EM structure of human CD163 bound to haptoglobin-hemoglobin reveals molecular mechanisms of hemoglobin scavenging.
Nature Communications,
15(1), Article 10871.
https://doi.org/10.1038/s41467-024-55171-4