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Latest peer-reviewed publications at MBG

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Displaying results 2551 to 62 out of 62

Peer-reviewed publications at MBG - all years

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Hyun, M., Choi, S., Stevnsner, T. & Ahn, B. (2016). The Caenorhabditis elegans Werner syndrome protein participates in DNA damage checkpoint and DNA repair in response to CPT-induced double-strand breaks. Cellular Signalling, 28(3), 214-223. https://doi.org/10.1016/j.cellsig.2015.12.006

Agerschou, E. D., Christiansen, G., Schafer, N. P., Madsen, D. J., Brodersen, D. E., Semsey, S. & Otzen, D. E. (2016). The transcriptional regulator GalR self-assembles to form highly regular tubular structures. Scientific Reports, 6, Article 27672. https://doi.org/10.1038/srep27672

Rattan, S. (2015). Biology of ageing: principles, challenges and perspectives. Romanian Journal of Morphology and Embryology, 56(4), 1251-1253. http://www.rjme.ro/RJME/resources/files/56041512511253.pdf

Alexandre, P. A., Kogelman, L. J. A., Santana, M. H. A., Passarelli, D., Pulz, L. H., Fantinato-Neto, P., Silva, P. L., Leme, P. R., Strefezzi, R. F., Coutinho, L. L., Ferraz, J. B. S., Eler, J. P., Kadarmideen, H. N. & Fukumasu, H. (2015). Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle. BMC Genomics, 16(1), Article 1073. https://doi.org/10.1186/s12864-015-2292-8

Branscheid, A., Marchais, A., Schott, G., Lange, H., Gagliardi, D., Andersen, S. U., Voinnet, O. & Brodersen, P. (2015). SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis. Nucleic Acids Research, 43(22), 10975-10988. https://doi.org/10.1093/nar/gkv1014

Hansen, T. B., Venø, M. T., Damgaard, C. K. & Kjems, J. (2015). Comparison of circular RNA prediction tools. Nucleic Acids Research. https://doi.org/10.1093/nar/gkv1458

Amin, Y. Y. I., Runager, K., Simoes, F., Celiz, A., Taresco, V., Rossi, R., Enghild, J. J., Abildtrup, L. A., Kraft, D. C. E., Sutherland, D. S., Alexander, M. R., Foss, M. & Ogaki, R. (2015). Combinatorial Biomolecular Nanopatterning for High-Throughput Screening of Stem-Cell Behavior. Advanced Materials. https://doi.org/10.1002/adma.201504995

Krogager, T. P., Nielsen, L. V., Kahveci, D., Dyrlund, T. F., Scavenius, C., Sanggaard, K. W. & Enghild, J. J. (2015). Hepatocytes respond differently to major dietary trans fatty acid isomers, elaidic acid and trans-vaccenic acid. Proteome Science, 13(31), 1-14. https://doi.org/10.1186/s12953-015-0084-3

Dupont, D. M., Larsen, N., Jensen, J. K., Andreasen, P. A. & Kjems, J. (2015). Characterisation of aptamer-target interactions by branched selection and high-throughput sequencing of SELEX pools. Nucleic Acids Research, 43(21), 1-13. Article e139. https://doi.org/10.1093/nar/gkv700

Sukosd, Z., Andersen, E. S., Seemann, S. E., Jensen, M., Hansen, M. B., Gorodkin, J. & Kjems, J. (2015). Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain. Nucleic Acids Research, 43(21), 10168-10179. https://doi.org/10.1093/nar/gkv1039

Petersen, G., Cuenca, A., Møller, I. M. & Seberg, O. (2015). Massive gene loss in mistletoe (Viscum, Viscaceae) mitochondria. Scientific Reports, 5, Article 17588. https://doi.org/10.1038/srep17588

Mundbjerg, K., Jørgensen, S. W., Fredsøe, J., Nielsen, I., Pedersen, J. M., Bentsen, I. B., Lisby, M., Bjergbaek, L. & Andersen, A. H. (2015). Top2 and Sgs1-Top3 Act Redundantly to Ensure rDNA Replication Termination. PLoS Genetics, 11(12), e1005697. https://doi.org/10.1371/journal.pgen.1005697

Liu, S., Huang, S., Rao, J., Ye, W., Genome Denmark Consortium (Anders Børglum, member of -), Krogh, A. & Wang, J. (2015). Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale. GigaScience, 4, 64. https://doi.org/10.1186/s13742-015-0103-4

Madsen, J., Sørensen, T. R., Kaspersen, J. D., Silow, M. B., Vind, J., Pedersen, J. S., Svendsen, A. & Otzen, D. E. (2015). Promoting protein self-association in non-glycosylated Thermomyces lanuginosus lipase based on crystal lattice contacts. Biochimica et Biophysica Acta - Proteins and Proteomics, 154(12), 1914-1921. https://doi.org/10.1016/j.bbapap.2015.09.007

Christoffersen, H. F., Andreasen, M., Zhang, S., Nielsen, E. H., Christiansen, G., Dong, M., Skrydstrup, T. & Otzen, D. E. (2015). Scaffolded multimers of hIAPP20-29 peptide fragments fibrillate faster and lead to different fibrils compared to the free hIAPP20-29 peptide fragment. Biochimica et Biophysica Acta - Proteins and Proteomics, 1854(12), 1890-1897. https://doi.org/10.1016/j.bbapap.2015.08.005

Briggs, D. C., Birchenough, H. L., Ali, T., Rugg, M. S., Waltho, J. P., Ievoli, E., Jowitt, T. A., Enghild, J. J., Richter, R. P., Salustri, A., Milner, C. M. & Day, A. J. (2015). Metal Ion-Dependent Heavy Chain Transfer Activity of TSG-6 Mediates Assembly of the Cumulus-Oocyte Matrix. Journal of Biological Chemistry, 290, 28708-28723. https://doi.org/10.1074/jbc.M115.669838

Chen, M., Andersen, M. Ø., Dillschneider, P., Chang, C.-C., Gao, S., Le, D. Q. S., Yang, C., Hein, S., Bünger, C. & Kjems, J. (2015). Co-delivery of siRNA and doxorubicin to cancer cells from additively manufactured implants. RSC Advances, 5, 101718-101725. https://doi.org/10.1039/C5RA23748C

Mohammad-Beigi, H., Shojaosadati, S. A., Marvian, A. T., Pedersen, J. N., Klausen, L. H., Christiansen, G., Pedersen, J. S., Dong, M., Morshedi, D. & Otzen, D. E. (2015). Strong interactions with polyethylenimine-coated human serum albumin nanoparticles (PEI-HSA NPs) alter α-synuclein conformation and aggregation kinetics. Nanoscale, 7, 19627-19640. https://doi.org/10.1039/c5nr05663b

Yang, C., Ogaki, R., Hansen, L., Kjems, J. & Mian Teo, B. (2015). Theranostic carbon dots derived from garlic with efficient anti-oxidative effects towards macrophages. R S C Advances, 118, 97836-97840. https://doi.org/10.1039/C5RA16874K

Staniec, D., Ksiazek, M., Thøgersen, I. B., Enghild, J. J., Sroka, A., Bryzek, D., Bogyo, M., Abrahamson, M. & Potempa, J. (2015). Calcium Regulates the Activity and Structural Stability of Tpr, a Bacterial Calpain-like Peptidase. Journal of Biological Chemistry, 290, 27248-27260. https://doi.org/10.1074/jbc.M115.648782

Bofill-De Ros, X., Santos, M., Vila-Casadesús, M., Villanueva, E., Andreu, N., Dierssen, M. & Fillat, C. (2015). Genome-wide miR-155 and miR-802 target gene identification in the hippocampus of Ts65Dn Down syndrome mouse model by miRNA sponges. BMC Genomics, 16(1), Article 907. https://doi.org/10.1186/s12864-015-2160-6

Andersson, R., Chen, Y., Core, L., Lis, J. T., Sandelin, A. & Jensen, T. H. (2015). Human Gene Promoters Are Intrinsically Bidirectional. Molecular Cell, 60(3), 346-347. https://doi.org/10.1016/j.molcel.2015.10.015

Tataru, P., Bataillon, T. & Hobolth, A. (2015). Inference Under a Wright-Fisher Model Using an Accurate Beta Approximation. Genetics, 201(3), 1133-1141.

Lykke-Andersen, S. & Jensen, T. H. (2015). Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes. Nature Reviews. Molecular Cell Biology, 16, 665-677. https://doi.org/10.1038/nrm4063

Zuccaro, L., Tesauro, C., Kurkina, T., Fiorani, P., Ki Yu, H., Knudsen, B. R., Kern, K., Desideri, A. & Balasubramanian, K. (2015). Real-Time Label-Free Direct Electronic Monitoring of Topoisomerase Enzyme Binding Kinetics on Graphene. ACS Nano, 9(11), 11166-11176. https://doi.org/10.1021/acsnano.5b05709

Estrela, N., Franquelim, H. G., Lopes, C., Tavares, E., Macedo, J. A., Christiansen, G., Otzen, D. E. & Melo, E. P. (2015). Sucrose prevents protein fibrillation through compaction of the tertiary structure but hardly affects the secondary structure. Proteins: Structure, Function, and Bioinformatics, 83(11), 2039-2051. https://doi.org/10.1002/prot.24921

Michaels, T. C. T., Yde, P., Willis, J. C. W., Jensen, M. H., Otzen, D., Dobson, C. M., Buell, A. K. & Knowles, T. P. J. (2015). The length distribution of frangible biofilaments. Journal of Chemical Physics, 143(16), 1-15. Article 164901. https://doi.org/10.1063/1.4933230

Bajic, G., Degn, S. E., Thiel, S. & Andersen, G. R. (2015). Complement activation, regulation, and molecular basis for complement-related diseases. EMBO Journal, 34(22), 2735-2757. https://doi.org/10.15252/embj.201591881

Kogelman, L. J. A., Zhernakova, D. V., Westra, H. J., Cirera, S., Fredholm, M., Franke, L. & Kadarmideen, H. N. (2015). An integrative systems genetics approach reveals potential causal genes and pathways related to obesity. Genome Medicine, 7(1), 1-15. Article 105. https://doi.org/10.1186/s13073-015-0229-0

Zeng, G., Vad, B. S., Dueholm, M. S., Christiansen, G., Nilsson, M., Tolker-Nielsen, T., Nielsen, P. H., Meyer, R. L. & Otzen, D. E. (2015). Functional bacterial amyloid increases Pseudomonas biofilm hydrophobicity and stiffness. Frontiers in Microbiology, 6, 1099. https://doi.org/10.3389/fmicb.2015.01099

Hede, M. S., Nkem Okorie, P., Kirk Fruekilde, S., Fjelstrup, S., Thomsen, J., Franch, O., Tesauro, C., Tobias Bugge, M., Christiansen, M., Stephane, P., Lotsch, F., Ghyslain, M.-N., Mischlinger, J., Adegnika, A. A., Pedersen, F. S., Ho, Y.-P., Petersen, E., Stougaard, M., Ramharter, M. & Knudsen, B. R. (2015). Refined Method for Droplet Microfluidics-Enabled Detection of Plasmodium falciparum Encoded Topoisomerase I in Blood from Malaria Patients. Micromachines, 6(10), 1505-1513. https://doi.org/10.3390/mi6101432

Perrault, I., Halbritter, J., Porath, J. D., Gerard, X., Braun, D. A., Gee, H. Y., Fathy, H. M., Saunier, S., Cormier-Daire, V., Thomas, S. R., Attie-Bitach, T., Boddaert, N., Taschner, M., Schueler, M., Lorentzen, E., Lifton, R. P., Lawson, J. A., Garfa-Traore, M., Otto, E. A. ... Hildebrandt, F. (2015). IFT81, encoding an IFT-B core protein, as a very rare cause of a ciliopathy phenotype. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 52(10), 657-665.

Vilhjálmsson, B. J., Yang, J., Finucane, H. K., Gusev, A., Lindström, S., Ripke, S., Genovese, G., Loh, P.-R., Bhatia, G., Do, R., Hayeck, T., Won, H.-H., Kathiresan, S., Pato, M., Pato, C., Tamimi, R., Stahl, E., Zaitlen, N., Pasaniuc, B. ... Børglum, A. (2015). Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores. American Journal of Human Genetics, 97(4), 576-92. https://doi.org/10.1016/j.ajhg.2015.09.001

Bizet, A. A., Becker-Heck, A., Ryan, R., Weber, K., Filhol, E., Krug, P., Halbritter, J., Delous, M., Lasbennes, M. C., Linghu, B., Oakeley, E. J., Zarhrate, M., Nitschke, P., Garfa-Traore, M., Serluca, F., Yang, F., Bouwmeester, T., Pinson, L., Cassuto, E. ... Saunier, S. (2015). Mutations in TRAF3IP1/IFT54 reveal a new role for IFT proteins in microtubule stabilization. Nature Communications, 6, 8666.

Vetter, M. M., Wang, J., Lorentzen, E. & Deretic, D. (2015). Novel topography of the Rab11-effector interaction network within a ciliary membrane targeting complex. Small GTPases, 6(4), 165-173. https://doi.org/10.1080/21541248.2015.1091539

Holt, D. B., Gupta, V., Meyer, D., Abel, N. B., Andersen, S. U., Stougaard, J. & Markmann, K. (2015). micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules. New Phytologist, 208(1), 241-256. https://doi.org/10.1111/nph.13445

Foldager, L., Munksgaard, L., Trénel, P. & Thomsen, P. T. (2015). Predicting daily eating activity of dairy cows from 3D accelerometer data and RFID signals by use of a random forests model. In C. H. Knight (Ed.), Proceedings of the Third DairyCare Conference 2015 (pp. 31-31)

Jiang, Z., Zhang, S., Yang, C., Zadegan, R. M., Kjems, J., Huang, Y., Besenbacher, F. & Dong, M. (2015). Serum-induced degradation of 3D DNA box origami observed with high-speed atomic force microscopy (vol 8, pg 2170, 2015). Nano Research, 8(10), 3446-3446. https://doi.org/10.1007/s12274-015-0848-1

Patron, N. J., Orzaez, D., Marillonnet, S., Warzecha, H., Matthewman, C., Youles, M., Raitskin, O., Leveau, A., Farré, G., Rogers, C., Smith, A., Hibberd, J., Webb, A. A. R., Locke, J., Schornack, S., Ajioka, J., Baulcombe, D. C., Zipfel, C., Kamoun, S. ... Haseloff, J. (2015). Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytologist, 208(1), 13-9. https://doi.org/10.1111/nph.13532

Sun, M., Yang, C., Zheng, J., Wang, M., Chen, M., Le, D. Q. S., Kjems, J. & Bünger, C. (2015). Enhanced efficacy of chemotherapy for breast cancer stem cells by simultaneous suppression of multidrug resistance and antiapoptotic cellular defense. Acta Biomaterialia, 28, 171–182. https://doi.org/10.1016/j.actbio.2015.09.029

Rattan, S. (2015). Aging and senescence of skin cells in culture. In M. A. Farage, K. W. Miller & M. H.I. (Eds.), Textbook of Aging Skin (pp. 1-8). Springer. https://doi.org/10.1007/978-3-642-27814-3_50-2

Lauber, C., Vieyres, G., Terczynska-Dyla, E., Kusuma, A., Dijkman, R., Gad, H. H., Akhtar, H., Geffers, R., Vondran, F., Thiel, V., Kaderali, L., Pietschmann, T. & Hartmann, R. (2015). Transcriptome analysis reveals a classical interferon signature induced by IFNλ4 in human primary cells. Genes and Immunity, 16, 414-421. https://doi.org/10.1038/gene.2015.23

Pant, S. D., Karlskov-Mortensen, P., Jacobsen, M. J., Cirera, S., Kogelman, L. J. A., Bruun, C. S., Mark, T., Jørgensen, C. B., Grarup, N., Appel, E. V. R., Galjatovic, E. A. A., Hansen, T., Pedersen, O., Guerin, M., Huby, T., Lesnik, P., Meuwissen, T. H. E., Kadarmideen, H. N. & Fredholm, M. (2015). Comparative analyses of QTLs influencing obesity and metabolic phenotypes in pigs and humans. PLoS One, 10(9), Article e0137356. https://doi.org/10.1371/journal.pone.0137356