Peer-reviewed articles

Publications from the department

Journal covers made by researchers from our department

Ferguson, S., Abel, N. B., Reid, D., Madsen, L. H., Luu, T. B., Andersen, K. R., Stougaard, J. & Radutoiu, S. (2023). A simple and efficient protocol for generating transgenic hairy roots using Agrobacterium rhizogenes. PLOS ONE, 18(11), Article e0291680. https://doi.org/10.1371/journal.pone.0291680

Conover, C. A. & Oxvig, C. (2023). The Pregnancy-Associated Plasma Protein-A (PAPP-A) Story. Endocrine Reviews, 44(6), 1012-1028. https://doi.org/10.1210/endrev/bnad017

López Hernández, M., Pedersen, J. S. & Otzen, D. E. (2023). Proteins and biosurfactants: Structures, functions, and recent applications. Current Opinion in Colloid and Interface Science, 68, Article 101746. https://doi.org/10.1016/j.cocis.2023.101746

Winters, J. F. M., Kobek-Kjeldager, C., Foldager, L., Tecles, F. & Pedersen, L. J. (2023). Stress responses in pigs postweaning: Effect of heavier hybrid and weaning intact litters. Applied Animal Behaviour Science, 269, Article 106106. https://doi.org/10.1016/j.applanim.2023.106106

Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2023). Polygenic risk prediction: why and when out-of-sample prediction R² can exceed SNP-based heritability. American Journal of Human Genetics, 110(7), 1207-1215. https://doi.org/10.1016/j.ajhg.2023.06.006

Rolland, T., Cliquet, F., Anney, R. J. L., Moreau, C., Traut, N., Mathieu, A., Huguet, G., Duan, J., Warrier, V., Portalier, S., Dry, L., Leblond, C. S., Douard, E., Amsellem, F., Malesys, S., Maruani, A., Toro, R., Børglum, A. D., Grove, J. ... Bourgeron, T. (2023). Phenotypic effects of genetic variants associated with autism. Nature Medicine, 29(7), 1671-1680. https://doi.org/10.1038/s41591-023-02408-2

Ansarifar, S., Andreikė, G., Nazari, M., Labouriau, R., Nabavi, S. & Moreno, A. (2023). Impact of volume and expression time in an AAV-delivered channelrhodopsin. Molecular Brain, 16(1), Article 77. https://doi.org/10.1186/s13041-023-01067-1

Dauben, H., Matic, I., Kidmose, R. T., Pedersen, B. P., Saha, T., Di Virgilio, M. & Sung, J. H. (2023). Turning science into cover art. Trends in Biochemical Sciences, 48(12), 1009-1011. https://doi.org/10.1016/j.tibs.2023.09.006

Polák, P., Garland, W., Rathore, O., Schmid, M., Salerno-Kochan, A., Jakobsen, L., Gockert, M., Gerlach, P., Silla, T., Andersen, J. S., Conti, E. & Jensen, T. H. (2023). Dual agonistic and antagonistic roles of ZC3H18 provide for co-activation of distinct nuclear RNA decay pathways. Cell Reports, 42(11), Article 113325. https://doi.org/10.1016/j.celrep.2023.113325

Frank, M., Fechete, L. I., Tedeschi, F., Nadzieja, M., Nørgaard, M. M. M., Montiel, J., Andersen, K. R., Schierup, M. H., Reid, D. & Andersen, S. U. (2023). Single-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus. Nature Communications, 14(1), 7171. https://doi.org/10.1038/s41467-023-42911-1

Ntini, E., Budach, S., Vang Ørom, U. A. & Marsico, A. (2023). Genome-wide measurement of RNA dissociation from chromatin classifies transcripts by their dynamics and reveals rapid dissociation of enhancer lncRNAs. Cell systems, 14(10), 906-922.e6. https://doi.org/10.1016/j.cels.2023.09.005

Bærentsen, R. L., Nielsen, S. V., Skjerning, R. B., Lyngsø, J., Bisiak, F., Pedersen, J. S., Gerdes, K., Sørensen, M. A. & Brodersen, D. E. (2023). Structural basis for kinase inhibition in the tripartite E. coli HipBST toxin-antitoxin system. eLife, 12. https://doi.org/10.7554/eLife.90400

Darooei, R., Nazari, M., Kafieh, R. & Rabbani, H. (2023). Loss-modified transformer-based U-Net for accurate segmentation of fluids in optical coherence tomography images of retinal diseases. Journal of Medical Signals and Sensors, 13(4), 253-260. https://doi.org/10.4103/jmss.jmss_52_22

Gram, H., Theologidis, V., Boesen, T. & Jensen, P. H. (2023). Sarkosyl differentially solubilizes patient-derived alpha-synuclein fibril strains. Frontiers in Molecular Biosciences, 10, 1177556. Article 1177556. https://doi.org/10.3389/fmolb.2023.1177556, https://doi.org/10.3389/fmolb.2023.1177556

Sun, C., Desch, K., Nassim-Assir, B., Giandomenico, S. L., Nemcova, P., Langer, J. D. & Schuman, E. M. (2023). An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Science, 380(6647), Article 811. https://doi.org/10.1126/SCIENCE.ADF2018

Amin, H., Nolte, S. S., Swain, B. & von Philipsborn, A. C. (2023). GABAergic signaling shapes multiple aspects of Drosophila courtship motor behavior. iScience, 26(11), Article 108069. https://doi.org/10.1016/j.isci.2023.108069

Ali, S. A., Chung, K. H. K., Forgham, H., Olsen, W. P., Kakinen, A., Balaji, A., Otzen, D. E., Davis, T. P. & Javed, I. (2023). Alzheimer's Progenitor Amyloid-β Targets and Dissolves Microbial Amyloids and Impairs Biofilm Function. Advanced Science, 10(29), Article e2301423. https://doi.org/10.1002/advs.202301423

Keller, J. G., Petersen, K. V., Mizielinski, K., Thiesen, C., Bjergbæk, L., Reguera, R. M., Pérez-Pertejo, Y., Balaña-Fouce, R., Trejo, A., Masdeu, C., Alonso, C., Knudsen, B. R. & Tesauro, C. (2023). Gel-Free Tools for Quick and Simple Screening of Anti-Topoisomerase 1 Compounds. Pharmaceuticals, 16(5), Article 657. https://doi.org/10.3390/ph16050657

Martens, A. K., Erwig, M., Patzig, J., Fledrich, R., Füchtbauer, E. M. & Werner, H. B. (2023). Targeted inactivation of the Septin2 and Septin9 genes in myelinating Schwann cells of mice. Cytoskeleton, 80(7-8), 290-302. https://doi.org/10.1002/cm.21736

Montiel, J., García-Soto, I., James, E. K., Reid, D., Cárdenas, L., Napsucialy-Mendivil, S., Ferguson, S., Dubrovsky, J. G. & Stougaard, J. (2023). Aromatic amino acid biosynthesis impacts root hair development and symbiotic associations in Lotus japonicus. Plant Physiology, 193(2), 1508-1526. https://doi.org/10.1093/plphys/kiad398

Boegholm, N., Petriman, N. A., Loureiro-López, M., Wang, J., Vela, M. I. S., Liu, B., Kanie, T., Ng, R., Jackson, P. K., Andersen, J. S. & Lorentzen, E. (2023). The IFT81-IFT74 complex acts as an unconventional RabL2 GTPase-activating protein during intraflagellar transport. EMBO Journal, 42(18), Article e111807. https://doi.org/10.15252/embj.2022111807

Zhang, C., Reid, K., Sands, A. F., Fraimout, A., Schierup, M. H. & Merilä, J. (2023). De Novo Mutation Rates in Sticklebacks. Molecular Biology and Evolution, 40(9), Article msad192. https://doi.org/10.1093/molbev/msad192

Faress, I., Khalil, V., Yamamoto, H., Sajgo, S., Yonehara, K. & Nabavi, S. (2023). Recombinase-independent AAV for anterograde transsynaptic tracing. Molecular Brain, 16(1), Article 66. https://doi.org/10.1186/s13041-023-01053-7

Als, T. D., Kurki, M. I., Grove, J., Voloudakis, G., Therrien, K., Tasanko, E., Nielsen, T. T., Naamanka, J., Veerapen, K., Levey, D. F., Bendl, J., Bybjerg-Grauholm, J., Zeng, B., Demontis, D., Rosengren, A., Athanasiadis, G., Bækved-Hansen, M., Qvist, P., Bragi Walters, G. ... Børglum, A. D. (2023). Depression pathophysiology, risk prediction of recurrence and comorbid psychiatric disorders using genome-wide analyses. Nature Medicine, 29(7), 1832-1844. https://doi.org/10.1038/s41591-023-02352-1

Vodolazs'ka, D., Feyera, T., Foldager, L. & Lauridsen, C. (2023). The influence of supplementary feeding during suckling and later weaning on growth performance, incidences of post-weaning diarrhoea and immunity of piglets. Livestock Science, 276, Article 105321. https://doi.org/10.1016/j.livsci.2023.105321

Konrad, C. V., Iversen, E. F., Gunst, J. D., Monrad, I., Holleufer, A., Hartmann, R., Østergaard, L. J., Søgaard, O. S., Schleimann, M. H. & Tolstrup, M. (2023). Redirector of Vaccine-induced Effector Responses (RoVER) for specific killing of cellular targets. EBioMedicine, 96, Article 104785. https://doi.org/10.1016/j.ebiom.2023.104785

Rusbjerg-Weberskov, C. E., Johansen, M. L., Nowak, J. S., Otzen, D., Pedersen, J. S., Enghild, J. J. & Nielsen, N. S. (2023). Periostin C-Terminal Is Intrinsically Disordered and Interacts with 143 Proteins in an In Vitro Epidermal Model of Atopic Dermatitis. Biochemistry, 62(19), 2803-2815. https://doi.org/10.1021/acs.biochem.3c00176

Lassen, J. K., Wang, T., Nielsen, K. L., Hasselstrøm, J. B., Johannsen, M. & Villesen, P. (2023). Large-Scale metabolomics: Predicting biological age using 10,133 routine untargeted LC–MS measurements. Aging Cell, 22(5), Article e13813. https://doi.org/10.1111/acel.13813

Roeters, S. J., Strunge, K., Pedersen, K. B., Golbek, T. W., Bregnhøj, M., Zhang, Y., Wang, Y., Dong, M., Nielsen, J., Otzen, D. E., Schiøtt, B. & Weidner, T. (2023). Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces. Nature Communications, 14(1), Article 5731. https://doi.org/10.1038/s41467-023-39843-1

Larsen, T. V., Daugaard, T. F., Gad, H. H., Hartmann, R. & Nielsen, A. L. (2023). PD-L1 and PD-L2 immune checkpoint protein induction by type III interferon in non-small cell lung cancer cells. Immunobiology, 228(3), Article 152389. https://doi.org/10.1016/j.imbio.2023.152389

Berntsson, E., Vosough, F., Noormägi, A., Padari, K., Asplund, F., Gielnik, M., Paul, S., Jarvet, J., Tõugu, V., Roos, P. M., Kozak, M., Gräslund, A., Barth, A., Pooga, M., Palumaa, P. & Wärmländer, S. K. T. S. (2023). Characterization of Uranyl (UO₂²⁺) Ion Binding to Amyloid Beta (Aβ) Peptides: Effects on Aβ Structure and Aggregation. ACS Chemical Neuroscience, 14(15), 2618-2633. https://doi.org/10.1021/acschemneuro.3c00130

Charmouh, A. P., Bocedi, G. & Hartfield, M. (2023). Inferring the distributions of fitness effects and proportions of strongly deleterious mutations. G3: Genes, Genomes, Genetics, 13(9), Article jkad140. https://doi.org/10.1093/g3journal/jkad140

Khalil, V., Faress, I., Mermet-Joret, N., Kerwin, P., Yonehara, K. & Nabavi, S. (2023). Subcortico-amygdala pathway processes innate and learned threats. eLife, 12, Article e85459. https://doi.org/10.7554/eLife.85459

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Thodberg, K., Petersen, D. L. S. & Herskin, M. S. (2023). Effects of journey duration and temperature during pre-slaughter transport on behaviour of cull sows in lairage. Research in Veterinary Science, 164, Article 105016. https://doi.org/10.1016/j.rvsc.2023.105016

Govande, A. A., Babnis, A. W., Urban, C., Habjan, M., Hartmann, R., Kranzusch, P. J. & Pichlmair, A. (2023). RNase L-activating 2'-5' oligoadenylates bind ABCF1, ABCF3 and Decr-1. The Journal of general virology, 104(9), Article 104:001890. https://doi.org/10.1099/jgv.0.001890

Rasmussen, A. M., Okholm, T. L. H., Knudsen, M., Vang, S., Dyrskjøt, L., Hansen, T. B. & Pedersen, J. S. (2023). Circular stable intronic RNAs possess distinct biological features and are deregulated in bladder cancer. NAR cancer, 5(3), Article zcad041. https://doi.org/10.1093/narcan/zcad041

Coutant, M. P., Malmkvist, J., Foldager, L. & Herskin, M. S. (2023). Relationship among indicators of pain and stress in response to piglet surgical castration: an exploratory analysis. Journal of Veterinary Behavior, 67, 20-32. https://doi.org/10.1016/j.veb.2023.07.001

Lionikas, A., Hernandez Cordero, A. I., Kilikevicius, A., Carroll, A. M., Bewick, G. S., Bunger, L., Ratkevicius, A., Heisler, L. K., Harboe, M. & Oxvig, C. (2023). Stanniocalcin-2 inhibits skeletal muscle growth and is upregulated in functional overload-induced hypertrophy. Physiological Reports, 11(15), Article e15793. https://doi.org/10.14814/phy2.15793

Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A. ... Bonet, T. M. (2023). A global catalog of whole-genome diversity from 233 primate species. Science, 380(6648), 906-913. https://doi.org/10.1126/science.abn7829

Poulsgaard, G. A., Sørensen, S. G., Juul, R. I., Nielsen, M. M. & Pedersen, J. S. (2023). Sequence dependencies and mutation rates of localized mutational processes in cancer. Genome Medicine, 15(1), Article 63. https://doi.org/10.1186/s13073-023-01217-z

Kjeldbjerg Lassen, J., Bradshaw, R., Villesen, P. & Francese, S. (2023). Statistical Modelling Investigation of MALDI-MSI-Based Approaches for Document Examination. Molecules, 28(13), Article 5207. https://doi.org/10.3390/molecules28135207

Andersen, G. R. (2023). The lufaxin inhibitor caught in the act. Blood, 141(25), 3017-3018. https://doi.org/10.1182/blood.2023020507

Omelková, M., Fenger, C. D., Murray, M., Hammer, T. B., Pravata, V. M., Bartual, S. G., Czajewski, I., Bayat, A., Ferenbach, A. T., Stavridis, M. P. & van Aalten, D. M. F. (2023). An O-GlcNAc transferase pathogenic variant linked to intellectual disability affects pluripotent stem cell self-renewal. DMM Disease Models and Mechanisms, 16(6), Article dmm049132. https://doi.org/10.1242/dmm.049132

Oxvig, C. & Conover, C. A. (2023). The Stanniocalcin-PAPP-A-IGFBP-IGF Axis. Journal of Clinical Endocrinology and Metabolism, 108(7), 1624-1633. https://doi.org/10.1210/clinem/dgad053

Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. ... Zhang, G. (2023). Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology and Evolution, 7(7), 1114-1130. https://doi.org/10.1038/s41559-022-01974-x

Tschernoster, N., Erger, F., Kohl, S., Reusch, B., Wenzel, A., Walsh, S., Thiele, H., Becker, C., Franitza, M., Bartram, M. P., Kömhoff, M., Schumacher, L., Kukat, C., Borodina, T., Quedenau, C., Nürnberg, P., Rinschen, M. M., Driller, J. H., Pedersen, B. P. ... Altmüller, J. (2023). Long-read sequencing identifies a common transposition haplotype predisposing for CLCNKB deletions. Genome Medicine, 15(1), Article 62. https://doi.org/10.1186/s13073-023-01215-1

Heiland, M., Connolly, N. M. C., Mamad, O., Nguyen, N. T., Kesavan, J. C., Langa, E., Fanning, K., Sanfeliu, A., Yan, Y., Su, J., Venø, M. T., Costard, L. S., Neubert, V., Engel, T., Hill, T. D. M., Freiman, T. M., Mahesh, A., Tiwari, V. K., Rosenow, F. ... Henshall, D. C. (2023). MicroRNA-335-5p suppresses voltage-gated sodium channel expression and may be a target for seizure control. Proceedings of the National Academy of Sciences of the United States of America, 120(30), e2216658120. Article e2216658120. https://doi.org/10.1073/pnas.2216658120

Darooei, R., Nazari, M., Kafieh, R. & Rabbani, H. (2023). Optimal Deep Learning Architecture for Automated Segmentation of Cysts in OCT Images Using X-Let Transforms. Diagnostics, 13(12), Article 1994. https://doi.org/10.3390/diagnostics13121994

Carman, C. V., Nikova, D. N., Sakurai, Y., Shi, J., Novakovic, V. A., Rasmussen, J. T., Lam, W. A. & Gilbert, G. E. (2023). Membrane curvature and PS localize coagulation proteins to filopodia and retraction fibers of endothelial cells. Blood Advances, 7(1), 60-72. https://doi.org/10.1182/bloodadvances.2021006870

Evans, D. C. S., Khamas, A. B., Marcussen, L., Rasmussen, K. S., Klitgaard, J. K., Kallipolitis, B. H., Nielsen, J., Otzen, D. E., Leake, M. C. & Meyer, R. L. (2023). GFP fusions of Sec-routed extracellular proteins in Staphylococcus aureusreveal surface-associated coagulase in biofilms. Microbial Cell, 10(7), 145-156. https://doi.org/10.15698/mic2023.07.800

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Antaki, D., Guevara, J., Maihofer, A. X., Klein, M., Gujral, M., Grove, J., Carey, C. E., Hong, O., Arranz, M. J., Hervas, A., Corsello, C., Vaux, K. K., Muotri, A. R., Iakoucheva, L. M., Courchesne, E., Pierce, K., Gleeson, J. G., Robinson, E. B., Nievergelt, C. M. & Sebat, J. (2022). Publisher Correction: A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex (Nature Genetics, (2022), 10.1038/s41588-022-01064-5). Nature Genetics, 54(8), 1259. https://doi.org/10.1038/s41588-022-01145-5

Jakobsen, A-K., Yuusufi, S., Madsen, L. B., Meldgaard, P., Knudsen, B. R. & Stougaard, M. (2022). TDP1 and TOP1 as targets in anticancer treatment of NSCLC: Activity and protein level in normal and tumor tissue from 150 NSCLC patients correlated to clinical data. Lung Cancer, 164, 23-32. https://doi.org/10.1016/j.lungcan.2021.12.010

López de Las Hazas, M. C., Del Pozo-Acebo, L., Hansen, M. S., Gil-Zamorano, J., Mantilla-Escalante, D. C., Gómez-Coronado, D., Marín, F., Garcia-Ruiz, A., Rasmussen, J. T. & Dávalos, A. (2022). Dietary bovine milk miRNAs transported in extracellular vesicles are partially stable during GI digestion, are bioavailable and reach target tissues but need a minimum dose to impact on gene expression. European Journal of Nutrition, 61(2), 1043-1056. https://doi.org/10.1007/s00394-021-02720-y

Hansen, M. S., Gregersen, S. B. & Rasmussen, J. T. (2022). Bovine milk processing impacts characteristics of extracellular vesicle isolates obtained by size-exclusion chromatography. International Dairy Journal, 127, Article 105212. https://doi.org/10.1016/j.idairyj.2021.105212

Zhang, N., Kisiswa, L., Ramanujan, A., Li, Z., Sim, E. W., Tian, X., Yuan, W., Ibáñez, C. F. & Lin, Z. (2022). Correction: Structural basis of NF-κB signaling by the p75 neurotrophin receptor interaction with adaptor protein TRADD through their respective death domains (Journal of Biological Chemistry (2021) 297(2), (S002192582100716X), (10.1016/j.jbc.2021.100916)). Journal of Biological Chemistry, 298(11), Article 102583. https://doi.org/10.1016/j.jbc.2022.102583

Najarzadeh, Z., Mohammad-Beigi, H., Pedersen, J. N., Christiansen, G., Pedersen, J. S., Nielsen, J. & Otzen, D. E. (2022). Interaction of membrane vesicles with the Pseudomonas functional amyloid protein FapC facilitates amyloid formation. BBA advances, 2, 100055. Article 100055. https://doi.org/10.1016/j.bbadva.2022.100055

GSRD Consortium & Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2022). Identifying the Common Genetic Basis of Antidepressant Response. Biological Psychiatry Global Open Science, 2(2), 115-126. https://doi.org/10.1016/j.bpsgos.2021.07.008

Wigdor, E. M., Weiner, D. J., Grove, J., Fu, J. M., Thompson, W. K., Carey, C. E., Baya, N., van der Merwe, C., Walters, R. K., Satterstrom, F. K., Palmer, D. S., Rosengren, A., Bybjerg-Grauholm, J., Hougaard, D. M., Mortensen, P. B., Daly, M. J., Talkowski, M. E., Sanders, S. J., Bishop, S. L. ... iPSYCH Consortium (2022). The female protective effect against autism spectrum disorder. Cell Genomics, 2(6), Article 100134. https://doi.org/10.1016/j.xgen.2022.100134

Sun, C. & Schuman, E. M. (2022). Logistics of neuronal protein turnover: Numbers and mechanisms. Molecular and Cellular Neuroscience, 123, 103793. Article 103793. https://doi.org/10.1016/j.mcn.2022.103793

Verzelli, P., Nold, A., Sun, C., Heilemann, M., Schuman, E. M. & Tchumatchenko, T. (2022). Unbiased choice of global clustering parameters for single-molecule localization microscopy. Scientific Reports, 12(1), 22561. Article 22561. https://doi.org/10.1038/s41598-022-27074-1

Teodori, L., Omer, M., Märcher, A., Skaanning, M. K., Andersen, V. L., Nielsen, J. S., Oldenburg, E., Lin, Y., Gothelf, K. V. & Kjems, J. (2022). Site-specific nanobody-oligonucleotide conjugation for super-resolution imaging. Journal of Biological Methods, 9(1), Article e159. https://doi.org/10.14440/jbm.2022.381

Guillemet, M., Chabas, H., Nicot, A., Gatchich, F., Ortega-Abboud, E., Buus, C., Hindhede, L., Rousseau, G. M., Bataillon, T., Moineau, S. & Gandon, S. (2022). Competition and coevolution drive the evolution and the diversification of CRISPR immunity. Nature Ecology and Evolution, 6(10), 1480-1488. https://doi.org/10.1038/s41559-022-01841-9

Staulund, J., Song, P., Qi, H., Thrane, L., Duedahl, P., Weiss, T., Moers, C., Keller, A. K., Nørregaard, R., Pedersen, M., Leuvenink, H., Kjems, J., Jespersen, B. & Eijken, M. (2022). Assessing the quality of donor kidneys during normothermic machine perfusion using nanoparticle-based vitality sensors. Abstract from 3rd ECTORS meeting, Rotterdam, Netherlands.

Pierre-Ferre, S., Collins, B., Lukacsovich, D., Wen, SA., Chai, Y., Winterer, J., Auerbach, B., Li, M., Yan, J., Pedersen, L., Földy, C. & Brown, S. A. (2022). A single atypical phosphoswitch in specific SCN neurons gates winter seasonality in mice. Poster session presented at Society for Research on Biological Rhythms Biennial Conference, Amelia Island, Florida, United States.

Frank, M., Cortleven, A., Pěnčík, A., Novak, O. & Schmülling, T. (2022). The Photoperiod Stress Response in Arabidopsis thaliana Depends on Auxin Acting as an Antagonist to the Protectant Cytokinin. International Journal of Molecular Sciences , 23(6), Article 2936. https://doi.org/10.3390/ijms23062936

Martín-Rivada, Á., Guerra-Cantera, S., Campillo-Calatayud, A., Andrés-Esteban, E. M., Sánchez Holgado, M., Martos-Moreno, G., Pozo, J., Güemes, M., Soriano-Guillén, L., Pellicer, A., Oxvig, C., Frystyk, J., Chowen, J. A., Barrios, V. & Argente, J. (2022). Pappalysins and Stanniocalcins and Their Relationship With the Peripheral IGF Axis in Newborns and During Development. The Journal of clinical endocrinology and metabolism, 107(10), 2912-2924. https://doi.org/10.1210/clinem/dgac453

Keller, J. G., Mizielinski, K., Petersen, K. V., Stougaard, M., Knudsen, B. R. & Tesauro, C. (2022). Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples. Journal of visualized experiments : JoVE, 190, Article e64484. https://doi.org/10.3791/64484

Keller-Socin, J. G., Petersen, K. V., Knudsen, B. R. & Tesauro, C. (2022). Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer. In Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer InTechOpen. https://doi.org/10.5772/intechopen.105758

Cheng, Z., Palma-Vera, S., Buggiotti, L., Salavati, M., Becker, F., Werling, D., Wathes, D. C. & GplusE Consortium (2022). Transcriptomic analysis of circulating leukocytes obtained during the recovery from clinical mastitis caused by escherichia coli in Holstein dairy cows. Animals, 12(16), 1-22. Article 2146. https://doi.org/10.3390/ani12162146

Pirhaghi, M., Frank, S. A., Alam, P., Nielsen, J., Sereikaite, V., Gupta, A., Strømgaard, K., Andreasen, M., Sharma, D., Saboury, A. A. & Otzen, D. E. (2022). A penetratin-derived peptide reduces the membrane permeabilization and cell toxicity of α-synuclein oligomers. Journal of Biological Chemistry, 298(12), Article 102688. https://doi.org/10.1016/j.jbc.2022.102688

Kjærgaard, M., Rasmussen, L. S., Vinther, J. N., Andersen, K. R., Andersen, E. S., Lorentzen, E., Thirup, S. S., Otzen, D. & Brodersen, D. E. (2022). A Semester-Long Learning Path Teaching Computational Skills via Molecular Graphics in PyMOL. The Biophysicist, 3(2), 106–114. https://doi.org/10.35459/tbp.2022.000219

He, J., Steffen, J. H., Thulstrup, P. W., Pedersen, J. N., Sauerland, M. B., Otzen, D. E., Hawkins, C. L., Gourdon, P., Davies, M. J. & Hägglund, P. (2022). Anastellin impacts on the processing of extracellular matrix fibronectin and stimulates release of cytokines from coronary artery smooth muscle cells. Scientific Reports, 12(1), Article 22051. https://doi.org/10.1038/s41598-022-26359-9

Salimi, M., Javadi, A. H., Nazari, M., Bamdad, S., Tabasi, F., Parsazadegan, T., Ayene, F., Karimian, M., Gholami-Mahtaj, L., Shadnia, S., Jamaati, H., Salimi, A. & Raoufy, M. R. (2022). Nasal Air Puff Promotes Default Mode Network Activity in Mechanically Ventilated Comatose Patients: A Noninvasive Brain Stimulation Approach. Neuromodulation: Technology at the Neural Interface, 25(8), 1351-1363. https://doi.org/10.1016/j.neurom.2021.11.003

Maccio, U., Mihic, A., Lenggenhager, D., Kolm, I., Mittmann, C., Heikenwälder, M., Lorentzen, A. & Mihic-Probst, D. (2022). Hypoxia and Ezrin Expression in Primary Melanoma Have High Prognostic Relevance. International Journal of Molecular Sciences , 23(18), Article 10745. https://doi.org/10.3390/ijms231810745

Schmauck-Medina, T., Molière, A., Lautrup, S., Zhang, J., Chlopicki, S., Madsen, H. B., Cao, S., Soendenbroe, C., Mansell, E., Vestergaard, M. B., Li, Z., Shiloh, Y., Opresko, P. L., Egly, J. M., Kirkwood, T., Verdin, E., Bohr, V. A., Cox, L. S., Stevnsner, T. ... Fang, E. F. (2022). New hallmarks of ageing: a 2022 Copenhagen ageing meeting summary. Aging, 14(16), 6829-6839. https://doi.org/10.18632/aging.204248

Zarrabian, M., Montiel, J., Sandal, N., Ferguson, S., Jin, H., Lin, Y. Y., Klingl, V., Marín, M., James, E. K., Parniske, M., Stougaard, J. & Andersen, S. U. (2022). A Promiscuity Locus Confers Lotus burttii Nodulation with Rhizobia from Five Different Genera. Molecular plant-microbe interactions : MPMI, 35(11), 1006-1017. https://doi.org/10.1094/MPMI-06-22-0124-R

Antaki, D., Guevara, J., Maihofer, A. X., Klein, M., Gujral, M., Grove, J., Carey, C. E., Hong, O., Arranz, M. J., Hervas, A., Corsello, C., Vaux, K. K., Muotri, A. R., Iakoucheva, L. M., Courchesne, E., Pierce, K., Gleeson, J. G., Robinson, E. B., Nievergelt, C. M. & Sebat, J. (2022). A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex. Nature Genetics, 54(9), 1284-1292. https://doi.org/10.1038/s41588-022-01064-5

Meisl, G., Xu, C. K., Taylor, J. D., Michaels, T. C. T., Levin, A., Otzen, D., Klenerman, D., Matthews, S., Linse, S., Andreasen, M. & Knowles, T. P. J. (2022). Uncovering the universality of self-replication in protein aggregation and its link to disease. Science Advances, 8(32), Article eabn6831. https://doi.org/10.1126/sciadv.abn6831

Lassen, L. B., Thomsen, M. S., Basso, E., Füchtbauer, E. M., Füchtbauer, A., Outeiro, T. F., Jensen, P. H. & Moos, T. (2022). Mutation of Tyrosine Sites in the Human Alpha-Synuclein Gene Induces Neurotoxicity in Transgenic Mice with Soluble Alpha-Synuclein Oligomer Formation. Cells, 11(22), Article 3673. https://doi.org/10.3390/cells11223673

Petersen, K. V., Tesauro, C., Hede, M. S., Pages, C., Marcussen, L. B., Keller, J. G., Bugge, M., Holm, K., Bjergbæk, L., Stougaard, M., Wejse, C. & Knudsen, B. R. (2022). Rolling Circle Enhanced Detection of Specific Restriction Endonuclease Activities in Crude Cell Extracts. Sensors, 22(20), Article 7763. https://doi.org/10.3390/s22207763

Overgaard, C. K., Tao, K., Zhang, S., Christensen, B. T., Blahovska, Z., Radutoiu, S., Kelly, S. & Dueholm, M. K. D. (2022). Application of ecosystem-specific reference databases for increased taxonomic resolution in soil microbial profiling. Frontiers in Microbiology, 13, Article 942396. https://doi.org/10.3389/fmicb.2022.942396

Neumann, C., Rosenbaek, L. L., Flygaard, R. K., Habeck, M., Karlsen, J. L., Wang, Y., Lindorff-Larsen, K., Gad, H. H., Hartmann, R., Lyons, J. A., Fenton, R. A. & Nissen, P. (2022). Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity. The EMBO Journal, 41(23), Article e110169. https://doi.org/10.15252/embj.2021110169

Petriman, N. A., Loureiro-López, M., Taschner, M., Zacharia, N. K., Georgieva, M. M., Boegholm, N., Wang, J., Mourão, A., Russell, R. B., Andersen, J. S. & Lorentzen, E. (2022). Biochemically validated structural model of the 15-subunit intraflagellar transport complex IFT-B. The EMBO Journal, 41(24), Article e112440. https://doi.org/10.15252/embj.2022112440

Bush, J. A., Meyer, S. M., Fuerst, R., Tong, Y., Li, Y., Benhamou, R. I., Aikawa, H., Zanon, P. R. A., Gibaut, Q. M. R., Angelbello, A. J., Gendron, T. F., Zhang, Y. J., Petrucelli, L., Heick Jensen, T., Childs-Disney, J. L. & Disney, M. D. (2022). A blood-brain penetrant RNA-targeted small molecule triggers elimination of r(G₄C₂)^exp in c9ALS/FTD via the nuclear RNA exosome. Proceedings of the National Academy of Sciences, 119(48), Article e2210532119. https://doi.org/10.1073/pnas.2210532119

Hansen, N. P., Kristensen, T., Johansen, M., Wiking, L., Poulsen, N. A., Hellwing, A. L. F., Foldager, L., Jensen, S. K., Larsen, L. B. & Weisbjerg, M. R. (2022). Effects on feed intake, milk production, and methane emission in dairy cows fed silage or fresh grass with concentrate or fresh grass harvested at early or late maturity stage without concentrate. Journal of Dairy Science, 105(10), 8036-8053. https://doi.org/10.3168/jds.2022-21885

Flensburg, S. B., Garm, A. L. & Funch, P. (2022). The contraction-expansion behaviour in the demosponge Tethya wilhelma is light-controlled and follows a diurnal rhythm. Journal of Experimental Biology, 225(24), Article jeb244751. https://doi.org/10.1242/jeb.244751

Rowe, T. B., Stafford, T. W., Fisher, D. C., Enghild, J. J., Quigg, J. M., Ketcham, R. A., Sagebiel, J. C., Hanna, R. & Colbert, M. W. (2022). Human Occupation of the North American Colorado Plateau ∼37,000 Years Ago. Frontiers in Ecology and Evolution, 10, Article 903795. https://doi.org/10.3389/fevo.2022.903795

Blevins, A. S., Bassett, D. S., Scott, E. K. & Vanwalleghem, G. C. (2022). From calcium imaging to graph topology. Network Neuroscience, 6(4), 1125-1147. https://doi.org/10.1162/netn_a_00262

Neumann, C., Focht, D., Trampari, S., Lyons, J. A. & Nissen, P. (2022). Variations on a theme: Crystal forms of the amino-acid transporter MhsT. Acta Crystallographica Section F: Structural Biology Communications, 78(Part 8), 297-305. https://doi.org/10.1107/S2053230X22007154

Sheffer, M. M., Cordellier, M., Forman, M., Grewoldt, M., Hoffmann, K., Jensen, C., Kotz, M., Král, J., Kuss, A. W., Líznarová, E. & Uhl, G. (2022). Identification of sex chromosomes using genomic and cytogenetic methods in a range-expanding spider, Argiope bruennichi (Araneae: Araneidae). Biological Journal of The Linnean Society, 136(3), 405–416. https://doi.org/10.1093/biolinnean/blac039

Keller, J. G., Hymøller, K. M., Thorsager, M. E., Hansen, N. Y., Erlandsen, J. U., Tesauro, C., Simonsen, A. K. W., Andersen, A. B., Vandsø Petersen, K., Holm, L. L., Stougaard, M., Andresen, B. S., Kristensen, P., Frøhlich, R. & Knudsen, B. R. (2022). Topoisomerase 1 inhibits MYC promoter activity by inducing G-quadruplex formation. Nucleic Acids Research, 50(11), 6332-6342. https://doi.org/10.1093/nar/gkac482

Leslie, J. S., Hjeij, R., Vivante, A., Bearce, E. A., Dyer, L., Wang, J., Rawlins, L., Kennedy, J., Ubeyratna, N., Fasham, J., Irons, Z. H., Craig, S. B., Koenig, J., George, S., Pode-Shakked, B., Bolkier, Y., Barel, O., Mane, S., Frederiksen, K. K. ... Baple, E. L. (2022). Biallelic DAW1 variants cause a motile ciliopathy characterized by laterality defects and subtle ciliary beating abnormalities. Genetics in Medicine, 24(11), 2249-2261. https://doi.org/10.1016/j.gim.2022.07.019

Aagaard, A., Liu, S., Tregenza, T., Braad Lund, M., Schramm, A., Verhoeven, K. J. F., Bechsgaard, J. & Bilde, T. (2022). Adapting to climate with limited genetic diversity: Nucleotide, DNA methylation and microbiome variation among populations of the social spider Stegodyphus dumicola. Molecular Ecology, 31(22), 5765-5783. https://doi.org/10.1111/mec.16696

Kitazawa, T., Minoux, M., Ducret, S. & Rijli, F. M. (2022). Different Ectopic Hoxa2 Expression Levels in Mouse Cranial Neural Crest Cells Result in Distinct Craniofacial Anomalies and Homeotic Phenotypes. Journal of developmental biology, 10(1), Article 9. https://doi.org/10.3390/jdb10010009

Pumo, G. M., Kitazawa, T. & Rijli, F. M. (2022). Epigenetic and Transcriptional Regulation of Spontaneous and Sensory Activity Dependent Programs During Neuronal Circuit Development. Frontiers in Neural Circuits, 16, 21. Article 911023. https://doi.org/10.3389/fncir.2022.911023

Rattan, S. & Kaur, G. (2022). Nutrition, food and diet in health and longevity: we eat what we are. Nutrients, 14(24), Article 5376. https://doi.org/10.3390/nu14245376

Røikjer, T., Hobolth, A. & Munch, K. (2022). Graph-based algorithms for phase-type distributions. Statistics and Computing, 32(6), Article 103. https://doi.org/10.1007/s11222-022-10174-3

Harwood, S. L., Andersen, G. R. & Enghild, J. J. (2022). Recent cryogenic electron microscopy structures of human A2M may not be representative of the native protein. Proceedings of the National Academy of Sciences, 119(37), Article e2210218119. https://doi.org/10.1073/pnas.2210218119

Suppli, N. P., Andersen, K. K., Agerbo, E., Rajagopal, V. M., Appadurai, V., Coleman, J. R. I., Breen, G., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Pedersen, C. B., Pedersen, M. G., Thompson, W. K., Munk-Olsen, T., Benros, M. E., Als, T. D., Grove, J., Werge, T., Børglum, A. D., Hougaard, D. M. ... Musliner, K. L. (2022). Genome-wide by Environment Interaction Study of Stressful Life Events and Hospital-Treated Depression in the iPSYCH2012 Sample. Biological Psychiatry: Global Open Science, 2(4), 400-410. https://doi.org/10.1016/j.bpsgos.2021.11.003

Grønnemose, A. L., Østerlund, E. C., Otzen, D. E. & Jørgensen, T. J. D. (2022). EGCG has Dual and Opposing Effects on the N-terminal Region of Self-associating α-synuclein Oligomers. Journal of Molecular Biology, 434(23), Article 167855. https://doi.org/10.1016/j.jmb.2022.167855

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