Ferapontov, A., Omer, M., Baudrexel, I.
, Nielsen, J. S., Dupont, D. M., Juul-Madsen, K., Steen, P., Eklund, A. S.
, Thiel, S., Vorup-Jensen, T., Jungmann, R.
, Kjems, J. & Degn, S. E. (2023).
Antigen footprint governs activation of the B cell receptor.
Nature Communications,
14(1), Article 976.
https://doi.org/10.1038/s41467-023-36672-0
Manjunath, L., Oh, S., Ortega, P., Bouin, A., Bournique, E., Sanchez, A.
, Martensen, P. M., Auerbach, A. A., Becker, J. T., Seldin, M., Harris, R. S., Semler, B. L. & Buisson, R. (2023).
APOBEC3B drives PKR-mediated translation shutdown and protects stress granules in response to viral infection.
Nature Communications,
14(1), Article 820.
https://doi.org/10.1038/s41467-023-36445-9Ung, K. L., Schulz, L., Kleine-Vehn, J.
, Pedersen, B. P. & Hammes, U. Z. (2023).
Auxin transport at the endoplasmic reticulum: Roles and structural similarity of PIN-FORMED and PIN-LIKES.
Journal of Experimental Botany,
74(22), 6893-6903.
https://doi.org/10.1093/jxb/erad192
Taleski, M., Chapman, K., Novák, O., Schmülling, T.
, Frank, M. & Djordjevic, M. A. (2023).
CEP peptide and cytokinin pathways converge on CEPD glutaredoxins to inhibit root growth.
Nature Communications,
14(1), Article 1683.
https://doi.org/10.1038/s41467-023-37282-6Mullari, M., Fossat, N., Skotte, N. H., Asenjo-Martinez, A., Humphreys, D. T., Bukh, J., Kirkeby, A., Scheel, T. K. H.
& Nielsen, M. L. (2023).
Characterising the RNA-binding protein atlas of the mammalian brain uncovers RBM5 misregulation in mouse models of Huntington’s disease.
Nature Communications,
14(1), Article 4348.
https://doi.org/10.1038/s41467-023-39936-xChristensen, M. H., Drue, S. O., Rasmussen, M. H., Frydendahl, A., Lyskjær, I., Demuth, C., Nors, J., Gotschalck, K. A., Iversen, L. H., Andersen, C. L. & Pedersen, J. S. (2023).
Dreams: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection.
Genome Biology,
24(1), 99. Article 99.
https://doi.org/10.1186/s13059-023-02920-1
Jensen, M. B., Franchi, G. A., Larsen, M., Foldager, L. & Herskin, M. S. (2023).
Effects of feed energy density, daily milking frequency, and a single injection of cabergoline on behavior and welfare in dairy cows at dry-off.
Journal of Dairy Science,
106(12), 9136-9149.
https://doi.org/10.3168/jds.2022-22835
Roeters, S. J., Strunge, K., Pedersen, K. B., Golbek, T. W., Bregnhøj, M., Zhang, Y., Wang, Y., Dong, M., Nielsen, J., Otzen, D. E., Schiøtt, B. & Weidner, T. (2023).
Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces.
Nature Communications,
14(1), Article 5731.
https://doi.org/10.1038/s41467-023-39843-1
Bohr, F., Bohr, S. S. R., Mishra, N. K., González-Foutel, N. S., Pinholt, H. D.
, Wu, S., Nielsen, E. M.
, Zhang, M., Kjaergaard, M., Jensen, K. J. & Hatzakis, N. S. (2023).
Enhanced hexamerization of insulin via assembly pathway rerouting revealed by single particle studies.
Communications Biology,
6(1), Article 178.
https://doi.org/10.1038/s42003-022-04386-6Maimaitili, M., Chen, M., Febbraro, F., Ucuncu, E., Kelly, R., Niclis, J. C., Christiansen, J. R.
, Mermet-Joret, N., Niculescu, D., Lauritsen, J., Iannielli, A.
, Klæstrup, I. H., Jensen, U. B., Qvist, P., Nabavi, S., Broccoli, V.
, Nykjær, A., Romero-Ramos, M. & Denham, M. (2023).
Enhanced production of mesencephalic dopaminergic neurons from lineage-restricted human undifferentiated stem cells.
Nature Communications,
14(1), Article 7871.
https://doi.org/10.1038/s41467-023-43471-0
Ansarifar, S., Andreikė, G., Nazari, M., Labouriau, R., Nabavi, S. & Moreno, A. (2023).
Impact of volume and expression time in an AAV-delivered channelrhodopsin.
Molecular Brain,
16(1), Article 77.
https://doi.org/10.1186/s13041-023-01067-1
Menges, L., Giesen, J., Yilmaz, K., Mergia, E.
, Füchtbauer, A., Füchtbauer, E. M., Koesling, D. & Russwurm, M. (2023).
It takes two to tango: cardiac fibroblast-derived NO-induced cGMP enters cardiac myocytes and increases cAMP by inhibiting PDE3.
Communications Biology,
6(1), Article 504.
https://doi.org/10.1038/s42003-023-04880-5Marini, V., Nikulenkov, F., Samadder, P.
, Juul, S., Knudsen, B. R. & Krejci, L. (2023).
MUS81 cleaves TOP1-derived lesions and other DNA–protein cross-links.
BMC Biology,
21(1), Article 110.
https://doi.org/10.1186/s12915-023-01614-1Colding-Christensen, C. S., Kakulidis, E. S., Arroyo-Gomez, J., Hendriks, I. A., Arkinson, C., Fábián, Z., Gambus, A., Mailand, N., Duxin, J. P.
& Nielsen, M. L. (2023).
Profiling ubiquitin signalling with UBIMAX reveals DNA damage- and SCFβ-Trcp1-dependent ubiquitylation of the actin-organizing protein Dbn1.
Nature Communications,
14(1), Article 8293.
https://doi.org/10.1038/s41467-023-43873-0Zhang, Y., Yu, H., Wang, D., Lei, X., Meng, Y., Zhang, N., Chen, F., Lv, L., Pan, Q., Qin, H., Zhang, Z.
, van Aalten, D. M. F. & Yuan, K. (2023).
Protein O-GlcNAcylation homeostasis regulates facultative heterochromatin to fine-tune sog-Dpp signaling during Drosophila early embryogenesis.
Journal of Genetics and Genomics,
50(12), 948-959.
https://doi.org/10.1016/j.jgg.2023.05.014Kretsch, R. C.
, Andersen, E. S., Bujnicki, J. M., Chiu, W., Das, R., Luo, B., Masquida, B.
, McRae, E. K. S., Schroeder, G. M., Su, Z., Wedekind, J. E., Xu, L., Zhang, K., Zheludev, I. N., Moult, J. & Kryshtafovych, A. (2023).
RNA target highlights in CASP15: Evaluation of predicted models by structure providers.
Proteins: Structure, Function and Bioinformatics,
91(12), 1600-1615.
https://doi.org/10.1002/prot.26550Poulsgaard, G. A., Sørensen, S. G., Juul, R. I., Nielsen, M. M. & Pedersen, J. S. (2023).
Sequence dependencies and mutation rates of localized mutational processes in cancer.
Genome Medicine,
15(1), Article 63.
https://doi.org/10.1186/s13073-023-01217-z
Frank, M., Fechete, L. I., Tedeschi, F., Nadzieja, M., Nørgaard, M. M. M., Montiel, J., Andersen, K. R., Schierup, M. H., Reid, D. & Andersen, S. U. (2023).
Single-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus.
Nature Communications,
14(1), Article 7171.
https://doi.org/10.1038/s41467-023-42911-1
Winters, J. F. M., Kobek-Kjeldager, C., Foldager, L., Tecles, F.
& Pedersen, L. J. (2023).
Stress responses in pigs postweaning: Effect of heavier hybrid and weaning intact litters.
Applied Animal Behaviour Science,
269, Article 106106.
https://doi.org/10.1016/j.applanim.2023.106106
Cordiner, R. A., Dou, Y., Thomsen, R., Bugai, A., Granneman, S.
& Heick Jensen, T. (2023).
Temporal-iCLIP captures co-transcriptional RNA-protein interactions.
Nature Communications,
14(1), Article 696.
https://doi.org/10.1038/s41467-023-36345-y
Dauben, H., Matic, I.
, Kidmose, R. T., Pedersen, B. P., Saha, T., Di Virgilio, M. & Sung, J. H. (2023).
Turning science into cover art.
Trends in Biochemical Sciences,
48(12), 1009-1011.
https://doi.org/10.1016/j.tibs.2023.09.006Jensen, B. N., Wang, Y., Friec, A. L., Nabavi, S. . M. . S., Dong, MD., Seliktar, D.
& Chen, M. (2023).
Wireless electromagnetic neural stimulation patch with anisotropic guidance.
npj Flexible Electronics,
7(1), Article 34.
https://doi.org/10.1038/s41528-023-00270-3
Bergman, J., Pedersen, R., Lundgren, E. J., Lemoine, R. T., Monsarrat, S., Pearce, E. A., Schierup, M. H. & Svenning, J. C. (2023).
Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change.
Nature Communications,
14(1), Article 7679.
https://doi.org/10.1038/s41467-023-43426-5
Bærentsen, R. L., Nielsen, S. V.
, Skjerning, R. B., Lyngsø, J., Bisiak, F., Pedersen, J. S., Gerdes, K., Sørensen, M. A.
& Brodersen, D. E. (2023).
Structural basis for kinase inhibition in the tripartite E. coli HipBST toxin-antitoxin system.
eLife,
12, Article RP90400.
https://doi.org/10.7554/eLife.90400
Chen, Y., Atashi, H., Mota, R. R., Grelet, C., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023).
Validating genomic prediction for nitrogen efficiency index and its composition traits of Holstein cows in early lactation.
Journal of Animal Breeding and Genetics,
140(6), 695-706.
https://doi.org/10.1111/jbg.12819Dieudonné, T., Kümmerer, F.
, Laursen, M. J., Stock, C., Flygaard, R. K., Khalid, S., Lenoir, G.
, Lyons, J. A., Lindorff-Larsen, K.
& Nissen, P. (2023).
Activation and substrate specificity of the human P4-ATPase ATP8B1.
Nature Communications,
14, Article 7492.
https://doi.org/10.1038/s41467-023-42828-9
Jespersen, J. H., Harazin, A., Bohn, A. B., Christensen, A., Lorentzen, E. & Lorentzen, A. (2023).
Analysis of cortical cell polarity by imaging flow cytometry.
Journal of Cellular Biochemistry,
124(11), 1685-1694.
https://doi.org/10.1002/jcb.30476
Ferguson, S., Abel, N. B., Reid, D., Madsen, L. H., Luu, T. B., Andersen, K. R., Stougaard, J. & Radutoiu, S. (2023).
A simple and efficient protocol for generating transgenic hairy roots using Agrobacterium rhizogenes.
PLoS One,
18(11), Article e0291680.
https://doi.org/10.1371/journal.pone.0291680
Polák, P., Garland, W., Rathore, O., Schmid, M., Salerno-Kochan, A., Jakobsen, L.
, Gockert, M., Gerlach, P.
, Silla, T., Andersen, J. S., Conti, E.
& Jensen, T. H. (2023).
Dual agonistic and antagonistic roles of ZC3H18 provide for co-activation of distinct nuclear RNA decay pathways.
Cell Reports,
42(11), Article 113325.
https://doi.org/10.1016/j.celrep.2023.113325
Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Thodberg, K., Petersen, D. L. S.
& Herskin, M. S. (2023).
Effects of journey duration and temperature during pre-slaughter transport on behaviour of cull sows in lairage.
Research in Veterinary Science,
164, Article 105016.
https://doi.org/10.1016/j.rvsc.2023.105016
Cai, Z., Wu, X., Thomsen, B., Lund, M. S. & Sahana, G. (2023).
Genome-wide association study identifies functional genomic variants associated with young stock survival in Nordic Red Dairy Cattle.
Journal of Dairy Science,
106(11), 7832-7845.
https://doi.org/10.3168/jds.2023-23252
Beaumont, R. N., Flatley, C., Vaudel, M., Wu, X., Chen, J., Moen, G. H., Skotte, L., Helgeland, Ø., Solé-Navais, P., Banasik, K.
, Albiñana, C., Ronkainen, J., Fadista, J., Stinson, S. E., Trajanoska, K., Wang, C. A., Westergaard, D., Srinivasan, S., Sánchez-Soriano, C. ... Njølstad, P. R. (2023).
Genome-wide association study of placental weight identifies distinct and shared genetic influences between placental and fetal growth.
Nature Genetics,
55(11), 1807-1819.
https://doi.org/10.1038/s41588-023-01520-wUsaite, I., Biswas, D., Dijkstra, K., Watkins, T. B., Pich, O., Puttick, C., Angelova, M., Thakkar, K., Hiley, C.
, Birkbak, N., Kok, M., Zaccaria, S., Wu, Y., Litchfield, K., Swanton, C. & Kanu, N. (2023).
Quantifying the impact of immunotherapy on RNA dynamics in cancer.
Journal for ImmunoTherapy of Cancer,
11(11), Article e007870.
https://doi.org/10.1136/jitc-2023-007870Thomasen, P. B., Salasova, A., Kjaer-Sorensen, K., Woloszczuková, L., Lavický, J.
, Login, H., Tranberg-Jensen, J., Almeida, S., Beel, S., Kavková, M.
, Qvist, P., Kjolby, M., Ovesen, P. L., Nolte, S., Vestergaard, B., Udrea, A.-C., Nejsum, L. N., Chao, M. V., Van Damme, P.
... Nykjaer, A. (2023).
SorCS2 binds progranulin to regulate motor neuron development.
Cell Reports,
42(11), Article 113333.
https://doi.org/10.1016/j.celrep.2023.113333
Ung, K. L., Schulz, L., Stokes, D. L., Hammes, U. Z.
& Pedersen, B. P. (2023).
Substrate recognition and transport mechanism of the PIN-FORMED auxin exporters.
Trends in Biochemical Sciences,
48(11), 937-948.
https://doi.org/10.1016/j.tibs.2023.07.006
Juul-Kristensen, T., Keller, J. G., Borg, K. N., Hansen, N. Y., Foldager, A., Ladegaard, R., Ho, Y. P.
, Loeschcke, V. & Knudsen, B. R. (2023).
Topoisomerase 1 Activity Is Reduced in Response to Thermal Stress in Fruit Flies and in Human HeLa Cells.
Biosensors,
13(11), Article 950.
https://doi.org/10.3390/bios13110950
Chalmers, S. B., Madgwick, S., Lloyd-Lewis, B., McClurg, U. L., Elias, S.
, Andersen, P., Madsen, R., Ananthanarayanan, V.
& Davis, F. M. (2023).
Towards inclusive and sustainable scientific meetings.
Nature Cell Biology,
25(11), 1557-1560.
https://doi.org/10.1038/s41556-023-01222-9
Fedosov, S., Nexø, E., Würtz Heegaard, C., Goldin , J. & Manson, J. B. (2023).
Protein binding assays for an accurate differentiation of vitamin B12 from its inactive analogue. A study on edible cricket powder.
Food Chemistry: X,
19, Article 100824.
https://doi.org/10.1016/j.fochx.2023.100824
Ali, S. A., Chung, K. H. K., Forgham, H., Olsen, W. P., Kakinen, A., Balaji, A.
, Otzen, D. E., Davis, T. P. & Javed, I. (2023).
Alzheimer's Progenitor Amyloid-β Targets and Dissolves Microbial Amyloids and Impairs Biofilm Function.
Advanced Science,
10(29), Article e2301423.
https://doi.org/10.1002/advs.202301423Haldrup, M., Rasmussen, M., Mohamad, N., Dyrskog, S., Thorup, L., Mikic, N., Wismann, J., Grønhøj, M., Poulsen, F. R.
, Nazari, M., Rehman, N. U., Simonsen, C. Z. & Korshøj, A. R. (2023).
Intraventricular Lavage vs External Ventricular Drainage for Intraventricular Hemorrhage: A Randomized Clinical Trial.
JAMA Network Open,
6(10), e2335247. Article e2335247.
https://doi.org/10.1001/jamanetworkopen.2023.35247
Kisistók, J., Christensen, D. S., Rasmussen, M. H., Duval, L., Aggerholm-Pedersen, N., Luczak, A. A.
, Sorensen, B. S., Jakobsen, M. R., Oellegaard, T. H.
& Birkbak, N. J. (2023).
Analysis of circulating tumor DNA during checkpoint inhibition in metastatic melanoma using a tumor-agnostic panel.
Melanoma Research,
33(5), 364-374.
https://doi.org/10.1097/CMR.0000000000000903
Yuan, C., Tang, L., Lopdell, T., Petrov, V. A., Oget-Ebrad, C., Moreira, G. C. M., Duarte, J. L. G., Sartelet, A., Cheng, Z., Salavati, M., Wathes, D. C., Crowe, M. A., GplusE Consortium, Coppieters, W., Littlejohn, M., Charlier, C., Druet, T., Georges, M. & Takeda, H. (2023).
An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants.
Genome Research,
33(10), 1848-1864.
https://doi.org/10.1101/gr.277947.123
