Scoyni, F., Sitnikova, V., Giudice, L., Korhonen, P., Trevisan, D. M., Hernandez de Sande, A., Gomez-Budia, M., Giniatullina, R., Ugidos, I. F., Dhungana, H., Pistono, C., Korvenlaita, N., Välimäki, N. N., Kangas, S. M., Hiltunen, A. E., Gribchenko, E., Kaikkonen-Määttä, M. U., Koistinaho, J., Ylä-Herttuala, S. ... Malm, T. (2024). ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling. Cell Reports, 43(3), Article 113862. https://doi.org/10.1016/j.celrep.2024.113862

Thodberg, K., Foldager, L., Schrøder-Petersen, D. L., Kobek-Kjeldager, C., Gould, L. M. & Herskin, M. S. (2024). Clinical condition of cull sows before and after transport to slaughter – Effects of journey duration and a stationary period. Research in Veterinary Science, 168, Article 105124. https://doi.org/10.1016/j.rvsc.2023.105124

Garg, A., González-Foutel, N. S., Gielnik, M. B. & Kjaergaard, M. (2024). Design of functional intrinsically disordered proteins. Protein Engineering, Design and Selection, 37, Article gzae004. https://doi.org/10.1093/protein/gzae004

Nguyen, M. T. A., Gobry, M. V., Sampedro Vallina, N., Pothoulakis, G. & Andersen, E. S. (2024). Enzymatic Assembly of Small Synthetic Genes with Repetitive Elements. ACS Synthetic Biology, 13(3), 963-968. https://doi.org/10.1021/acssynbio.3c00665

Lashkari, S., Weisbjerg, M. R., Foldager, L. & Børsting, C. F. (2024). Fat supplement for dairy cows during early lactation – potentials, challenges, and risks – a meta-analysis. Journal of Applied Animal Research, 52(1), Article 2323625. https://doi.org/10.1080/09712119.2024.2323625

Pai, S., Bontempi, D., Hadzic, I., Prudente, V., Sokač, M., Chaunzwa, T. L., Bernatz, S., Hosny, A., Mak, R. H., Birkbak, N. J. & Aerts, H. J. W. L. (2024). Foundation model for cancer imaging biomarkers. Nature Machine Intelligence, 6(3), 354-367. https://doi.org/10.1038/s42256-024-00807-9

Fedosov, S. N. & Nexo, E. (2024). Macro-B12 and Unexpectedly High Levels of Plasma B12: A Critical Review. Nutrients, 16(5), Article 648. https://doi.org/10.3390/nu16050648

Luige, J., Armaos, A., Tartaglia, G. G. & Ørom, U. A. V. (2024). Predicting nuclear G-quadruplex RNA-binding proteins with roles in transcription and phase separation. Nature Communications, 15, Article 2585. https://doi.org/10.1038/s41467-024-46731-9

Orr, M. E., Kulasinghe, A., Kolar, G. R., Heyn, H., Plummer, J., Sommer Kristensen, L., Kjems, J., Mills, G., Garcia-Vallejo, J. J., Nijman, I. J., West, N. P. & Cox, A. (2024). Sounding an Alarm over Spatial Biology. Genetic Engineering and Biotechnology News, 44(3), 16-17. https://doi.org/10.1089/gen.44.03.07

Andersen, J. S., Vijayakumaran, A., Godbehere, C., Lorentzen, E., Mennella, V. & Schou, K. B. (2024). Uncovering structural themes across cilia microtubule inner proteins with implications for human cilia function. Nature Communications, 15(1), Article 2687. https://doi.org/10.1038/s41467-024-46737-3

Lundgren, E. J., Bergman, J., Trepel, J., Roux, E. L., Monsarrat, S., Kristensen, J. A., Pedersen, R. Ø., Pereyra, P., Tietje, M. & Svenning, J. C. (2024). Functional traits—not nativeness—shape the effects of large mammalian herbivores on plant communities. Science, 383(6682), 531-537. https://doi.org/10.1126/science.adh2616

Abel, N. B., Nørgaard, M. M. M., Hansen, S. B., Gysel, K., Díez, I. A., Jensen, O. N., Stougaard, J. & Andersen, K. R. (2024). Phosphorylation of the alpha-I motif in SYMRK drives root nodule organogenesis. Proceedings of the National Academy of Sciences (PNAS), 121(8), e2311522121. Article e2311522121. https://doi.org/10.1073/pnas.2311522121

Digel, L., Mierzwa, M., Bonné, R., Zieger, S. E., Pavel, I. A., Ferapontova, E., Koren, K., Boesen, T., Harnisch, F., Marshall, I. P. G., Nielsen, L. P. & Kuhn, A. (2024). Cable Bacteria Skeletons as Catalytically Active Electrodes. Angewandte Chemie - International Edition, 63(6), Article e202312647. https://doi.org/10.1002/anie.202312647

Juul-Madsen, K., Parbo, P., Ismail, R., Ovesen, P. L., Schmidt, V., Madsen, L. S., Thyrsted, J., Gierl, S., Breum, M., Larsen, A., Andersen, M. N., Romero-Ramos, M., Holm, C. K., Andersen, G. R., Zhao, H., Schuck, P., Nygaard, J. V., Sutherland, D. S., Eskildsen, S. F. ... Vorup-Jensen, T. (2024). Amyloid-β aggregates activate peripheral monocytes in mild cognitive impairment. Nature Communications, 15(1), Article 1224. https://doi.org/10.1038/s41467-024-45627-y

Dinesen, A., Andersen, V. L., Elkhashab, M., Pilati, D., Bech, P., Fuchs, E., Samuelsen, T. R., Winther, A., Cai, Y., Märcher, A., Wall, A., Omer, M., Nielsen, J. S., Chudasama, V., Baker, J. R., Gothelf, K. V., Wengel, J., Kjems, J. & Howard, K. A. (2024). An Albumin-Holliday Junction Biomolecular Modular Design for Programmable Multifunctionality and Prolonged Circulation. Bioconjugate Chemistry, 35(2), 214-222. https://doi.org/10.1021/acs.bioconjchem.3c00491

Otzen, D. E. (2024). Antibodies and α-synuclein: What to target against Parkinson's Disease? Biochimica et Biophysica Acta - Proteins and Proteomics, 1872(2), Article 140943. https://doi.org/10.1016/j.bbapap.2023.140943

Otzen, D. & d'Angelo, J. (2024). BBA: 2024 and beyond. Biochimica et Biophysica Acta - General Subjects, 1868(2), Article 130524. https://doi.org/10.1016/j.bbagen.2023.130524

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Gould, L. M., Thodberg, K., Schrøder-Petersen, D. L. & Herskin, M. S. (2024). Behaviour of cull sows during transport to slaughter – Effects of journey duration, a stationary period and temperature. Applied Animal Behaviour Science, 271, Article 106174. https://doi.org/10.1016/j.applanim.2024.106174

Shamsi, W., Heinzelmann, R., Ulrich, S., Kondo, H. & Cornejo, C. (2024). Decoding the RNA virome of the tree parasite Armillaria provides new insights into the viral community of soil-borne fungi. Environmental Microbiology, 26(2), Article e16583. https://doi.org/10.1111/1462-2920.16583

Palimaru Manhoobi, I., Tramm, T., Redsted, S., Bodilsen, A., Foldager, L. & Christiansen, P. (2024). Digital breast tomosynthesis versus X-ray of the breast specimen for intraoperative margin assessment: A randomized trial. The Breast, 73, Article 103616. https://doi.org/10.1016/j.breast.2023.103616

Minero, G. A. S., Møllebjerg, A., Thiesen, C., Johansen, M. I., Jørgensen, N. P., Birkedal, V., Otzen, D. E. & Meyer, R. L. (2024). Extracellular G-quadruplexes and Z-DNA protect biofilms from DNase I, and G-quadruplexes form a DNAzyme with peroxidase activity. Nucleic Acids Research, 52(4), 1575-1590. https://doi.org/10.1093/nar/gkae034

Fast, M. S., Weyer, K., Pedersen, H., Andersen, G. R. & Birn, H. (2024). Filtration and tubular handling of EWE-hC3Nb1, a complement inhibitor nanobody, in wild type mice and a mouse model of proteinuric kidney disease. FEBS Open Bio, 14(2), 322-330. https://doi.org/10.1002/2211-5463.13752

van der Weijden, V. A., Stötzel, M., Iyer, D. P., Fauler, B., Gralinska, E., Shahraz, M., Meierhofer, D., Vingron, M., Rulands, S., Alexandrov, T., Mielke, T. & Bulut-Karslioglu, A. (2024). FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature Cell Biology, 26(2), 181–193. https://doi.org/10.1038/s41556-023-01325-3

Gao, C. H., Chen, C., Akyol, T., Dusa, A., Yu, G., Cao, B. & Cai, P. (2024). ggVennDiagram: Intuitive Venn diagram software extended. iMeta, 3(1), Article e177. https://doi.org/10.1002/imt2.177

Samsudin, F., Zuzic, L., Marzinek, J. & Bond, P. J. (2024). Mechanisms of allostery at the viral surface through the eyes of molecular simulation. Current Opinion in Structural Biology, 84, Article 102761. https://doi.org/10.1016/j.sbi.2023.102761

Rattan, S. (2024). Seven knowledge gaps in modern biogerontology. Biogerontology, 25(1), 1-8. https://doi.org/10.1007/s10522-023-10089-0

Qi, B., Graff, M., Bulik, C. M., North, K. E., Munn-Chernoff, M. A. & Grove, J. (2024). Shared genetic risk between anorexia nervosa and cardiovascular disease events: Evidence from genome-wide association studies. Brain and Behavior, 14(2), e3294. Article e3294. https://doi.org/10.1002/brb3.3294

Rivas-González, I., Schierup, M. H., Wakeley, J. & Hobolth, A. (2024). Trails: Tree reconstruction of ancestry using incomplete lineage sorting. PLoS Genetics, 20(2), Article e1010836. https://doi.org/10.1371/journal.pgen.1010836

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2024). Validation of behavioural sampling techniques for 20-25 kg pigs during transport. Livestock Science, 280, Article 105411. https://doi.org/10.1016/j.livsci.2024.105411

Erxleben, D. A., Dodd, R. J., Day, A. J., Green, D. E., DeAngelis, P. L., Poddar, S., Enghild, J. J., Huebner, J. L., Kraus, V. B., Watkins, A. R., Reesink, H. L., Rahbar, E. & Hall, A. R. (2024). Targeted Analysis of the Size Distribution of Heavy Chain-Modified Hyaluronan with Solid-State Nanopores. Analytical Chemistry, 96(4), 1606-1613. https://doi.org/10.1021/acs.analchem.3c04387

Fedosov, S., Nexø, E. & Würtz Heegaard, C. (2024). Kinetics of Cellular Cobalamin Uptake and Conversion: Comparison of Aquo/Hydroxocobalamin to Cyanocobalamin. Nutrients, 16(3), Article 378. https://doi.org/10.3390/nu16030378

Thomsen, M. M., Skouboe, M. K., Møhlenberg, M., Zhao, J., de Keukeleere, K., Heinz, J. L., Werner, M., Hollensen, A. K., Lønskov, J., Nielsen, I., Carter-Timofte, M. E., Zhang, B., Mikkelsen, J. G., Fisker, N., Paludan, S. R., Assing, K. & Mogensen, T. H. (2024). Impaired STING Activation Due to a Variant in the E3 Ubiquitin Ligase AMFR in a Patient with Severe VZV Infection and Hemophagocytic Lymphohistiocytosis. Journal of Clinical Immunology, 44(2), Article 56. https://doi.org/10.1007/s10875-024-01653-5

Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A. ... Farh, K. K. H. (2024). Identification of constrained sequence elements across 239 primate genomes. Nature, 625(7996), 735-742. https://doi.org/10.1038/s41586-023-06798-8

Kofod Petersen, A., Villesen, P. & Staun Larsen, L. (2024). Keypoint detection and representation for automated comparison of intraoral 3D photoscans. Abstract from PhD dag.

Monti, M., Milanetti, E., Frans, M. T., Miotto, M., Di Rienzo, L., Baranov, M. V., Gosti, G., Somavarapu, A. K., Nagaraj, M., Golbek, T. W., Rossing, E., Moons, S. J., Boltje, T. J., van den Bogaart, G., Weidner, T., Otzen, D. E., Tartaglia, G. G., Ruocco, G. & Roeters, S. J. (2024). Two Receptor Binding Strategy of SARS-CoV-2 Is Mediated by Both the N-Terminal and Receptor-Binding Spike Domain. The journal of physical chemistry. B, 128(2), 451-464. https://doi.org/10.1021/acs.jpcb.3c06258

McRae, E. K. S., Wan, C. J. K., Kristoffersen, E. L., Hansen, K., Gianni, E., Gallego, I., Curran, J. F., Attwater, J., Holliger, P. & Andersen, E. S. (2024). Cryo-EM structure and functional landscape of an RNA polymerase ribozyme. Proceedings of the National Academy of Sciences (PNAS), 121(3), e2313332121. Article e2313332121. https://doi.org/10.1073/pnas.2313332121

García-Soto, I., Andersen, S. U., Monroy-Morales, E., Robledo-Gamboa, M., Guadarrama, J., Aviles-Baltazar, N. Y., Serrano, M., Stougaard, J. & Montiel, J. (2024). A collection of novel Lotus japonicus LORE1 mutants perturbed in the nodulation program induced by the Agrobacterium pusense strain IRBG74. Frontiers in Plant Science, 14, Article 1326766. https://doi.org/10.3389/fpls.2023.1326766

Taleski, M., Jin, M., Chapman, K., Taylor, K., Winning, C., Frank, M., Imin, N. & Djordjevic, M. A. (2024). CEP hormones at the nexus of nutrient acquisition and allocation, root development, and plant-microbe interactions. Journal of Experimental Botany, 75(2), 538-552. https://doi.org/10.1093/jxb/erad444

Grigoriadis, K., Huebner, A., Bunkum, A., Colliver, E., Frankell, A. M., Hill, M. S., Thol, K., Birkbak, N. J., Swanton, C., Zaccaria, S. & McGranahan, N. (2024). Conipher: a computational framework for scalable phylogenetic reconstruction with error correction. Nature Protocols, 19(1), 159-183. https://doi.org/10.1038/s41596-023-00913-9

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