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Latest peer-reviewed publications at MBG

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Displaying results 351 to 136 out of 136

Peer-reviewed publications at MBG - all years

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Selten, G., Gómez-Repollés, A., Lamouche, F., Radutoiu, S. & de Jonge, R. (2025). SyFi: generating and using sequence fingerprints to distinguish SynCom isolates. Microbial Genomics, 11(9), Article 001461. https://doi.org/10.1099/mgen.0.001461

Kofod Petersen, A., Villesen, P. & Staun Larsen, L. (2025). The oral fingerprint: rapid 3D comparison of palatal rugae for forensic identification. Frontiers in Radiology, 5, Article 1638294. https://doi.org/10.3389/fradi.2025.1638294

Fedosov, S. N. (2025). The uptake of ingested vitamin B12 and its total body balance: a mathematical model suggests the optimal supplementation strategy. Biochimie. Advance online publication. https://doi.org/10.1016/j.biochi.2025.12.002

Paiva, P., Teixeira, L. M. C., Ferreira, P., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Transforming Computational Power into Environmental Solutions: HPC-driven Research on Urethanase-mediated Plastic Degradation. Procedia Computer Science, 267, 207-217. https://doi.org/10.1016/j.procs.2025.08.247

Paiva, P., Teixeira, L. M. C., Wei, R., Liu, W., Weber, G., Morth, J. P., Westh, P., Petersen, A. R., Johansen, M. B., Sommerfeldt, A., Sandahl, A., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Unveiling the enzymatic pathway of UMG-SP2 urethanase: insights into polyurethane degradation at the atomic level. Chemical Science, 16(5), 2437-2452. https://doi.org/10.1039/d4sc06688j

de Evan, T., Wang, W., Foldager, L. & Weisbjerg, M. R. (2025). Variation in individual cow’s response to methane-reducing additives. 110. Abstract from 9th GGAA, International Greenhouse Gas & Animal Agriculture Conference, Nairobi, Kenya. https://ggaaconference.org/storage/2026/01/GGAA2025-bookofabstracts-NIBIOBook11-9.pdf

Etzerodt, A., Mikkelsen, J. H., Torvund-Jensen, M., Hennig, D., Boesen, T., Graversen, J. H., Moestrup, S. K., Kollman, J. M. & Andersen, C. B. F. (2024). The Cryo-EM structure of human CD163 bound to haptoglobin-hemoglobin reveals molecular mechanisms of hemoglobin scavenging. Nature Communications, 15(1), Article 10871. https://doi.org/10.1038/s41467-024-55171-4

Borg, K. N., Shetty, A., Cheng, G., Zhu, S., Wang, T., Yuan, W., Ho, H. P., Knudsen, B. R., Tesauro, C. & Ho, Y. P. (2024). Hydrogel bead-based isothermal detection (BEAD-ID) for assessing the activity of DNA-modifying enzymes. iScience, 27(12), Article 111332. https://doi.org/10.1016/j.isci.2024.111332

Borg, K. N., Shetty, A., Cheng, G., Zhu, S., Wang, T., Ho, H. P., Knudsen, B. R., Tesauro, C. & Ho, Y.-P. (2024). Hydrogel bead-based isothermal detection (BEAD-ID) for assessing the activity of DNA-modifying enzymes. iScience, 27(12), Article 111332. https://doi.org/10.1016/j.isci.2024.111332

Korhonen, S., Stenberg, K., Seemab, U., Bartos, P., Mäkiniemi, K., Kjems, J., Dupont, D. M. & Subrizi, A. (2024). Targeting ocular tissues with intravenously administered aptamers selected by in vivo SELEX. Molecular Therapy Nucleic Acids, 35(4), Article 102352. https://doi.org/10.1016/j.omtn.2024.102352

Breinbjerg, A., Jørgensen, C. S., Walters, G. B., Grove, J., Als, T. D., Kamperis, K., Stéfansdóttir, L., Thirstrup, J. P., Borg, B., Albiñana, C., Vilhjálmsson, B. J., Eðvarðsson, V. Ö., Stefánsson, H., Mortensen, P. B., Agerbo, E., Werge, T., Børglum, A., Demontis, D., Stefánsson, K. ... Christensen, J. H. (2024). Exploring the Genetic Risk of Childhood Daytime Urinary Incontinence: A Genome-Wide Association Study. The Journal of Urology, 212(6), 851-861. https://doi.org/10.1097/JU.0000000000004187

Yamamoto, S., Nakamura, H., Kawamura, Y. K., Kitazawa, T., Kimura, M. & Kitazawa, Y. (2024). Alkoxy Substituted Brominated closo-Dodecaborates with Functionalized Aliphatic Spacers. Chemistry, 6(6), 1635-1644. https://doi.org/10.3390/chemistry6060099

Montalbano, S., Krebs, M. D., Rosengren, A., Vaez, M., Hellberg, K. L. G., Mortensen, P. B., Børglum, A. D., Geschwind, D. H., Raznahan, A., Thompson, W. K., Helenius, D., Werge, T., Ingason, A. & iPSYCH Investigators (2024). Analysis of exonic deletions in a large population study provides novel insights into NRXN1 pathology. npj Genomic Medicine, 9(1), Article 67. https://doi.org/10.1038/s41525-024-00450-8

Vieira de Sá, R., Sudria-Lopez, E., Cañizares Luna, M., Harschnitz, O., van den Heuvel, D. M. A., Kling, S., Vonk, D., Westeneng, H. J., Karst, H., Bloemenkamp, L., Varderidou-Minasian, S., Schlegel, D. K., Mars, M., Broekhoven, M. H., van Kronenburg, N. C. H., Adolfs, Y., Vangoor, V. R., de Jongh, R., Ljubikj, T. ... Pasterkamp, R. J. (2024). ATAXIN-2 intermediate-length polyglutamine expansions elicit ALS-associated metabolic and immune phenotypes. Nature Communications, 15(1), Article 7484. https://doi.org/10.1038/s41467-024-51676-0

Nielsen, I. H., Rovsing, A. B., Janns, J. H., Thomsen, E. A., Ruzo, A., Bøggild, A., Nedergaard, F., Møller, C. T., Boesen, T., Degn, S. E., Shah, J. V. & Mikkelsen, J. G. (2024). Cell-targeted gene modification by delivery of CRISPR-Cas9 ribonucleoprotein complexes in pseudotyped lentivirus-derived nanoparticles. Molecular Therapy Nucleic Acids, 35(4), Article 102318. https://doi.org/10.1016/j.omtn.2024.102318

Rybiczka-Tešulov, M., Garritsen, O., Venø, M. T., Wieg, L., Dijk, R. V., Rahimi, K., Gomes-Duarte, A., Wit, M. D., van de Haar, L. L., Michels, L., van Kronenburg, N. C. H., van der Meer, C., Kjems, J., Vangoor, V. R. & Pasterkamp, R. J. (2024). Circular RNAs regulate neuron size and migration of midbrain dopamine neurons during development. Nature Communications, 15(1), Article 6773. https://doi.org/10.1038/s41467-024-51041-1

Vangoor, V. R., Giuliani, G., de Wit, M., Rangel, C. K., Venø, M. T., Schulte, J. T., Gomes-Duarte, A., Senthilkumar, K., Puhakka, N., Kjems, J., de Graan, P. N. E. & Pasterkamp, R. J. (2024). Compartment-specific small non-coding RNA changes and nucleolar defects in human mesial temporal lobe epilepsy. Acta Neuropathologica, 148(1), Article 61. https://doi.org/10.1007/s00401-024-02817-8

Salomonsen, C., Martyn, A., Quilbé, J., Björgvinsdóttir, Þ. N., Andersen, S. U., Radutoiu, S. & Glasius, M. (2024). Comprehensive characterization of the rhizosphere metabolome: A novel method for non-targeted analysis of Lotus japonicus root exudates. Rhizosphere, 32, Article 100957. https://doi.org/10.1016/j.rhisph.2024.100957

Holst, J. M., Pedersen, M. B., Enemark, M. B., Hansen, M. C., Noerhave, P. R., Plesner, T. L., Frederiksen, H., Moeller, M. B., Hamilton-Dutoit, S. J., Noergaard, P., Mortensen, B. K., Ommen, H. B., Stentoft, J., Tam, W., Ludvigsen, M., Chan, W. C., Birkbak, N. J., Inghirami, G. & d’Amore, F. (2024). Co-shared genomic alterations within tumors from patients with both myeloproliferative neoplasms and lymphoma. Haematologica, 109(12), 4067-4072. https://doi.org/10.3324/haematol.2023.283798

Cai, H., Zhang, B., Ahrenfeldt, J., Joseph, J. V., Riedel, M., Gao, Z., Thomsen, S. K., Christensen, D. S., Bak, R. O., Hager, H., Vendelbo, M. H., Gao, X., Birkbak, N. & Thomsen, M. K. (2024). CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature Communications, 15(1), Article 2088. https://doi.org/10.1038/s41467-024-46370-0, https://doi.org/10.1038/s41467-024-46370-0

Mehmood, S., Thirup, S. S., Ahmed, S., Bashir, N., Saeed, A., Rafiq, M., Saeed, Q., Najam-ul-Haq, M., Khaliq, B., Ibrahim, M., Alonazi, W. B. & Akrem, A. (2024). Crystal structure of Kunitz-type trypsin inhibitor: Entomotoxic effect of native and encapsulated protein targeting gut trypsin of Tribolium castaneum Herbst. Computational and Structural Biotechnology Journal, 23, 3132-3142. https://doi.org/10.1016/j.csbj.2024.07.023

Rüegg, A. B., van der Weijden, V. A., de Sousa, J. A., von Meyenn, F., Pausch, H. & Ulbrich, S. E. (2024). Developmental progression continues during embryonic diapause in the roe deer. Communications Biology, 7(1), Article 270. https://doi.org/10.1038/s42003-024-05944-w

Christiansen, M. P. V., Ronne, N. & Hammer, B. (2024). Efficient ensemble uncertainty estimation in Gaussian processes regression. Machine Learning: Science and Technology, 5(4), Article 045029. https://doi.org/10.1088/2632-2153/ad8984

Bai, Z., Gholipourshahraki, T., Shrestha, M., Hjelholt, A., Hu, S., Kjolby, M., Rohde, P. D. & Sørensen, P. (2024). Evaluation of Bayesian Linear Regression derived gene set test methods. BMC Genomics, 25(1), Article 1236. https://doi.org/10.1186/s12864-024-11026-2

Mendoza-Suárez, M., Akyol, T. Y., Nadzieja, M. & Andersen, S. U. (2024). Increased diversity of beneficial rhizobia enhances faba bean growth. Nature Communications, 15(1), Article 10673. https://doi.org/10.1038/s41467-024-54940-5

Knudsen, L. J., Rauh, V., Pedersen, J. N., Dekker, P., Otzen, D. E., Larsen, L. B. & Nielsen, S. D. H. (2024). Insight into protein crosslinking and casein polymerization in pre- and posthydrolyzed lactose-free ultra-high-temperature milk during long-term storage. Journal of Dairy Science, 107(12), 10497-10511. https://doi.org/10.3168/jds.2024-25103

Khemka, N., Morris, G., Kazemzadeh, L., Costard, L. S., Neubert, V., Bauer, S., Rosenow, F., Venø, M. T., Kjems, J., Henshall, D. C., Prehn, J. H. M. & Connolly, N. M. C. (2024). Integrative network analysis of miRNA-mRNA expression profiles during epileptogenesis in rats reveals therapeutic targets after emergence of first spontaneous seizure. Scientific Reports, 14(1), Article 15313. https://doi.org/10.1038/s41598-024-66117-7

Shahsavari, S., Rad, M. B., Hajiaghajani, A., Rostami, M., Hakimian, F., Jafarzadeh, S., Hasany, M., Collingwood, J. F., Aliakbari, F., Fouladiha, H., Bardania, H., Otzen, D. E. & Morshedi, D. (2024). Magnetoresponsive liposomes applications in nanomedicine: A comprehensive review. Biomedicine & Pharmacotherapy, 181, Article 117665. https://doi.org/10.1016/j.biopha.2024.117665

Hobor, S., Al Bakir, M., Hiley, C. T., Skrzypski, M., Frankell, A. M., Bakker, B., Watkins, T. B. K., Markovets, A., Dry, J. R., Brown, A. P., van der Aart, J., van den Bos, H., Spierings, D., Oukrif, D., Novelli, M., Chakrabarti, T., Rabinowitz, A. H., Ait Hassou, L., Litière, S. ... TRACERx Consortium (2024). Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling. Nature Communications, 15(1), Article 4871. https://doi.org/10.1038/s41467-024-47606-9

Czarnocka-Cieciura, A., Poznański, J., Turtola, M., Tomecki, R., Krawczyk, P. S., Mroczek, S., Orzeł, W., Saha, U., Jensen, T. H., Dziembowski, A. & Tudek, A. (2024). Modeling of mRNA deadenylation rates reveal a complex relationship between mRNA deadenylation and decay. EMBO Journal, 43(24), 6525-6554. Article e1737. https://doi.org/10.1038/s44318-024-00258-3

Juul-Kristensen, T., Thiesen, C., Haurum, L. W., Keller-Socin, J. G., Lendamba, R. W., Zoleko Manego, R., Betouke, M. E., Knudsen, B. R., Pareja, E., Pareja-Tobes, E., Labouriau, R., Ghyslain, M.-N. & Tesauro, C. (2024). Non-Invasive Malaria Detection in Sub-Saharan Africa Using a DNA-Based Sensor System. Sensors, 24(24), Article 7947. https://doi.org/10.3390/s24247947

Birkmose, N., Frydendahl, E. U. & Knudsen, C. R. (2024). Optimized Construction of a Yeast SICLOPPS Library for Unbiased In Vivo Selection of Cyclic Peptides. Biochemistry, 63(24), 3273-3286. https://doi.org/10.1021/acs.biochem.4c00013

Fábián, Z., Kakulidis, E. S., Hendriks, I. A., Kühbacher, U., Larsen, N. B., Oliva-Santiago, M., Wang, J., Leng, X., Dirac-Svejstrup, A. B., Svejstrup, J. Q., Nielsen, M. L., Caldecott, K. & Duxin, J. P. (2024). PARP1-dependent DNA-protein crosslink repair. Nature Communications, 15(1), Article 6641. https://doi.org/10.1038/s41467-024-50912-x

Rodriguez-Paniagua, A., Tesauro, C., Knudsen, B. R., Fuertes, M. & Alonso, C. (2024). Phosphine Oxide Indenoquinoline Derivatives: Synthesis and Biological Evaluation as Topoisomerase I Inhibitors and Antiproliferative Agents. Molecules, 29(24), Article 5992. https://doi.org/10.3390/molecules29245992

TRACERx Consortium (2024). Representation of genomic intratumor heterogeneity in multi-region non-small cell lung cancer patient-derived xenograft models. Nature Communications, 15(1), Article 4653. https://doi.org/10.1038/s41467-024-47547-3

Wu, G., Rouvière, J. O., Schmid, M. & Heick Jensen, T. (2024). RNA 3′end tailing safeguards cells against products of pervasive transcription termination. Nature Communications, 15(1), Article 10446. https://doi.org/10.1038/s41467-024-54834-6

Okholm, K. R., Nooteboom, S. W., Vinther, J. N., Lamberti, V., Dey, S., Andersen, E. S., Zijlstra, P. & Sutherland, D. S. (2024). Single-Molecule Multivalent Interactions Revealed by Plasmon-Enhanced Fluorescence. ACS Nano, 18(52), 35429-35442. https://doi.org/10.1021/acsnano.4c12600

Kanaparthi, D., Lampe, M., Krohn, J. H., Zhu, B., Hildebrand, F., Boesen, T., Klingl, A., Phapale, P. & Lueders, T. (2024). The reproduction process of Gram-positive protocells. Scientific Reports, 14(1), Article 7075. https://doi.org/10.1038/s41598-024-57369-4

Pektas, A., Panitz, F. & Thomsen, B. (2024). TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation. Genes, 15(12), Article 1547. https://doi.org/10.3390/genes15121547

Serrano, K., Tedeschi, F., Andersen, S. U. & Scheller, H. V. (2024). Unraveling plant-microbe symbioses using single-cell and spatial transcriptomics. Trends in Plant Science, 29(12), 1356-1367. https://doi.org/10.1016/j.tplants.2024.06.008

Ottosson, F., Russo, F., Abrahamsson, A., MacSween, N., Courraud, J., Skogstrand, K., Melander, O., Ericson, U., Orho-Melander, M., Cohen, A. S., Grove, J., Mortensen, P. B., Hougaard, D. M. & Ernst, M. (2024). Unraveling the metabolomic architecture of autism in a large Danish population-based cohort. BMC Medicine, 22(1), Article 302. https://doi.org/10.1186/s12916-024-03516-7

Mirsanaye, A. S., Hoffmann, S., Weisser, M., Mund, A., Lopez Mendez, B., Typas, D., van den Boom, J., Benedict, B., Hendriks, I. A., Nielsen, M. L., Meyer, H., Duxin, J. P., Montoya, G. & Mailand, N. (2024). VCF1 is a p97/VCP cofactor promoting recognition of ubiquitylated p97-UFD1-NPL4 substrates. Nature Communications, 15(1), Article 2459. https://doi.org/10.1038/s41467-024-46760-4

Iyer, D. P., Khoei, H. H., van der Weijden, V. A., Kagawa, H., Pradhan, S. J., Novatchkova, M., McCarthy, A., Rayon, T., Simon, C. S., Dunkel, I., Wamaitha, S. E., Elder, K., Snell, P., Christie, L., Schulz, E. G., Niakan, K. K., Rivron, N. & Bulut-Karslioğlu, A. (2024). mTOR activity paces human blastocyst stage developmental progression. Cell, 187(23), 6566-6583.e22. https://doi.org/10.1016/j.cell.2024.08.048

Pupak, A., Rodríguez-Navarro, I., Sathasivam, K., Singh, A., Essmann, A., del Toro, D., Ginés, S., Mouro Pinto, R., Bates, G. P., Vang Ørom, U. A., Martí, E. & Brito, V. (2024). m⁶A modification of mutant huntingtin RNA promotes the biogenesis of pathogenic huntingtin transcripts. EMBO Reports, 25(11), 5026-5052. https://doi.org/10.1038/s44319-024-00283-7

Kofod Petersen, A., Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2024). Palatinale rugae til human identifikation: test af to metoder til superimposition af 3D digitale skanninger. Poster session presented at Dansk Selskab for Retsmedicins Årskursus 2024, Aarhus, Denmark.

Segelund, E. B., Kristensen, M. D., Holste, S., Lundby, J. M. B. & Pedersen, L. (2024). Inorganic phosphate transporter PiT2 and phosphate homeostasis. Abstract from 20th Annual Vienna BioCenter PhD Program Symposium , Vienna, Austria.

Suteau, V., Zuzic, L., Hansen, D. H., Kjølbye, L. R., Sibilia, P., Gourdin, L., Briet, C., Thomas, M., Bourdeaud, E., Tricoire-Leignel, H., Schiøtt, B., Carato, P., Rodien, P. & Munier, M. (2024). Effects and risk assessment of halogenated bisphenol A derivatives on human follicle stimulating hormone receptor: An interdisciplinary study. Journal of Hazardous Materials, 479, Article 135619. https://doi.org/10.1016/j.jhazmat.2024.135619

Gamaleldin, M., Yu, N. K., Diedrich, J. K., Ma, Y., Wienand, A., McClatchy, D. B., Nykjaer, A., Nabavi, S. & Yates, J. R. (2024). DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity. Journal of Proteome Research, 23(11), 4878-4895. https://doi.org/10.1021/acs.jproteome.4c00180

Davis, M. C., André, A. A. M. & Kjaergaard, M. (2024). Entering the Next Phase: Predicting Biological Effects of Biomolecular Condensates. Journal of Molecular Biology, 436(21), Article 168645. https://doi.org/10.1016/j.jmb.2024.168645