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Latest peer-reviewed publications at MBG

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Peer-reviewed publications at MBG - all years

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Pedersen, J. S. & Otzen, D. (2008). Amyloid - a state in many guises: survival of the fittest fibril fold. Protein Science, 17, 1-9.
Larsen, P., Nielsen, J. L. & Otzen, D. (2008). Amyloid-like adhesins in floc-forming and filamentous bacteria in activated sludge. Applied and Environmental Microbiology, 74, 1517-1526.
Mallorquí-Fernández, N., Manandhar, SP., Mallorquí-Fernández, G., Usón, I., Wawrzonek, K., Kantyka, T., Solà, M., Thøgersen, I., Enghild, J. J., Potempa, J. & Gomis-Rüth, FX. (2008). A New Autocatalytic Activation Mechanism for Cysteine Proteases Revealed by Prevotella intermedia Interpain A. Journal of Biological Chemistry.
Fens, M. H., Mastrobattista, E., de Graaf, A. M., Flesch, F. M., Ultee, A., Rasmussen, J. T., Molema, G., Storm, G. & Schiffelers, R. M. (2008). Angiogenic endothelium shows lactadherin-dependent phagocytosis of aged erythrocytes and apoptotic cells. Blood, 111(9), 4542-4550.
Appenzeller-Herzog, C., Riemer, J., Christensen, B., Sørensen, E. S. & Ellgaard, L. (2008). A Novel Disulfide Switch Mechanism in Ero1a Balances ER Oxidation in Human Cells. EMBO Journal, 27, 2977-2987.
Bødtkjer, E., Prætorius, J., Füchtbauer, E.-M. & Aalkjær, C. (2008). Antibody-independent localization of the electroneutral Na+-HCO3- cotransporter NBCn1 (slc4a7) in mice. American Journal of Physiology: Cell Physiology, 294(2), C591-C603.
Haaning, S., Radutoiu, S., Hoffmann, S. V., Dittmer, J., Giehm, L., Otzen, D. & Stougaard, J. (2008). An unusual intrinsically disordered protein from the model legume Lotus japonicus stabilizes proteins in vitro. Journal of Biological Chemistry, 283(45), 31142-52. https://doi.org/10.1074/jbc.M805024200
Mathiasen, L., Dupont, D. M., Christensen, A., Blouse, G., Jensen, J. K., Gils, A., Declerck, P. J., Wind, T. & Andreasen, P. (2008). A peptide accelerating the conversion of plasminogen activator inhibitor-1 to an inactive latent state. Molecular Pharmacology, 74(3), 641-653.
Fadista, J., Nygaard, M., Holm, L.-E., Thomsen, B. & Bendixen, C. (2008). A snapshot of CNVs in the pig genome. PLoS One, 3(12), e3916. https://doi.org/10.1371/journal.pone.0003916
Nielsen, L. F., Schendel, D., Grove, J., Hvidtjørn, D., Jacobsson, B., Josiassen, T. L., Vestergaard, M., Uldall, P. & Thorsen, P. (2008). Asphyxia-related risk factors and their timing in spastic cerebral palsy. BJOG: An International Journal of Obstetrics and Gynaecology, 115(12), 1518-1528. https://doi.org/10.1111/j.1471-0528.2008.01896.x
Andersen, F. F., Knudsen, B., Oliveira, C. L. P. D., Hougaard, R. F., Krüger, D., Bungert, J., Agbandje-McKenna, M., McKenna, R., Jensen, S. J., Veigaard, C., Koch, J., Rubinstein, J. L., Guldbrandtsen, B., Hede, M. S., Karlsson, G., Andersen, A. H., Pedersen, J. S. & Knudsen, B. R. (2008). Assembly and structural analysis of a covalently closed nano-scale DNA cage. Nucleic Acids Research, 36(4), 1113-1119. https://doi.org/10.1093/nar/gkm1124
Afshari, NA., Bahadur, RP., Eifrig Jr, DE., Thøgersen, I., Enghild, J. J. & Klintworth, GK. (2008). Atypical asymmetric lattice corneal dystrophy associated with a novel homozygous mutation (Val624Met) in the TGFBI gene. Molecular Vision, 14(12).
Arpanaei, A., Pillai, S., Meyer, R. L., Besenbacher, F., Bernbom, N., Jensen, R. L., Gram, L., Enghild, J. J., Petersen, S. V. & Kingshott, P. (2008). Bacteria repellent properties of adsorbed fish proteins. Paper presented at Danish Colloid and Interface Society Annual Meeting, Aarhus, Denmark.
McClendon, A., Gentry, A., Dickey, J., Brinch, M., Bendsen, S. P., Andersen, A. H. & Osheroff, N. (2008). Bimodal Recognition of DNA Geometry by Human Topoisomerase IIα: Preferential Relaxation of Positively Supercoiled DNA Requires Elements in the C-terminal Domain. Biochemistry, 47, 13169-78.
Jacobsen, J., Visse, R., Sørensen, HP., Enghild, J. J., Brew, K., Wewer, UM. & Nagase, H. (2008). Catalytic Properties of ADAM12 and Its Domain Deletion Mutants. Biochemistry.
Rattan, S. (2008). Cellular senescence in vitro. Encyclopedia of Life Sciences, 2008. (doi: 10.1002/9780470015902.a0002567.pub2. In Encyclopedia of Life Sciences https://doi.org/10.1002/9780470015902.a0002567.pub2
Schar, C. R., Jensen, J. K., Christensen, A., Blouse, G., Peterson, C. B. & Andreasen, P. (2008). Characterisation of a site on pai-1 that binds to vitronectin outside of the somatomedin B domain. Journal of Biological Chemistry, 283(42), 28487-28496.
Nesgaard, L. W., Hoffmann, S. V., Andersen, C. B., Malmendal, A. & Otzen, D. (2008). Characterization of Dry Globular Proteins and Protein Fibrils by Synchrotron Radiation Vacuum UV Circular Dichroism. Biopolymers, 89(9), 779-795.
Pallesen, L. T., Pedersen, L. R. L., Petersen, T. E., Knudsen, C. R. & Rasmussen, J. T. (2008). Characterization of human mucin (MUC15) and identification of ovine and caprine orthologs. Journal of Dairy Science, 91(12), 4477-83.
Borges, K., Gearing, M., Rittling, S., Sørensen, E. S., Kotloski, R., Denhardt, D. T. & Dingledine, R. (2008). Characterization of osteopontin expression and function after status epilepticus. Epilepsia, 49, 1675-1685.
Howard, K. A., Paludan, S. R., Behlke, M. A., Besenbacher, F., Deleuran, B. W. & Kjems, J. (2008). Chitosan/siRNA nanoparticle-mediated TNF-alpha knockdown in peritoneal macrophages for anti-inflammatory treatment in a murine arthritis model. Molecular Therapy, 17(1), 162-168. https://doi.org/10.1038/mt.2008.220
Torarinsson, E., Yao, Z., Wiklund, E. D., Bramsen, J. B., Hansen, C. A., Kjems, J., Tommerup, N., Ruzzo, W. L. & Gorodkin, J. (2008). Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions. Genome Research, 18(2), 242-251. https://doi.org/10.1101/gr.6887408
Stissing, M., Mailund, T., Pedersen, C. S., Brodal, G. S. & Fagerberg, R. (2008). Computing the all-pairs quartet distance on a set of evolutionary trees. Journal of Bioinformatics and Computational Biology, 6(1), 37-50.
Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, R., Munch, K., Brand, T., Gilbert, M. T. P., Zuber, M. T., Bunce, M., Rønn, R., Gilichinsky, D., Froese, D. & Willerslev, E. (2008). Correction for Johnson et al., Ancient bacteria show evidence of DNA repair. Proceedings of the National Academy of Sciences (PNAS), 105(30). https://doi.org/10.1073/pnas.0804198105
Jørgensen, J. M., Sørensen, F. B., Bendix, K., Nielsen, J. L., Funder, A. M. D., Karkkainen, M. J., Tainola, T., Pedersen, F. S., Sørensen, A. B., Kühle, A. V. D. A. & d'Amore, F. A. (2008). Correlation between epstein-barr virus (EBV) RNA expression and vascular endothelial growth factor (VEGF) expression in different subtypes of peripheral T-cell lymphomas (PTCL) and prognostic implications. In ANNALS OF ONCOLOGY (Vol. 19, pp. 113-113)
Aagaard, J., Freiesleben, M. & Foldager, L. (2008). Crisis homes for adult psychiatric patients. Social Psychiatry and Psychiatric Epidemiology, 43, 403-409. https://doi.org/10.1007/s00127-008-0311-7
Andersen, M. Ø., Howard, K. A., Paludan, S. R., Besenbacher, F. & Kjems, J. (2008). Delivery of siRNA from lyophilized polymeric surfaces. Biomaterials, 29(4), 506-512. https://doi.org/10.1016/j.biomaterials.2007.10.003
Giehm, L., Christensen, C., Boas, U., Heegaard, P. M. H. & Otzen, D. (2008). Dendrimers destabilize proteins in a generation-dependent manner involving eletrostatic interactions. Biopolymers, 89, 522-529.
Lund, M. S., Guldbrandtsen, B., Buitenhuis, A. J., Thomsen, B. & Bendixen, C. (2008). Detection of quantitative trait loci in Danish Holstein cattle affecting clinical mastitis, somatic cell score, udder conformation traits, and assessment of associated effects on milk yield. Journal of Dairy Science, 91(9), 4028-4036. https://doi.org/10.3168/jds.2007-0290
Otzen, D. (2008). Differential adsorption of variants of the thermomyces lanuginosus lipase on a hydrophobic surface suggests a role for local flexibility. Colloids and Surfaces B: Biointerfaces, (64), 223-228.
Andersen, E. S., Dong, M., Nielsen, M. M., Jahn, K., Lind-Thomsen, A., Mamdouh, W., Gothelf, K. V., Besenbacher, F. & Kjems, J. (2008). DNA origami design of dolphin-shaped structures with flexible tails. A C S Nano, 2(6), 1213-8. https://doi.org/10.1021/nn800215j
Kelbaek, H., Thuesen, L., Helqvist, S., Clemmensen, P., Kløvgaard, L., Kaltoft, A., Andersen, B., Thuesen, H. H. H., Engstrøm, T., Bøtker, H. E., Saunamäki, K., Krusell, L. R., Jørgensen, E., Hansen, H.-H. T., Christiansen, E. H., Ravkilde, J., Køber, L., Kofoed, K. F., Terkelsen, C. J. ... DEDICATION Investigators (2008). Drug-eluting versus bare metal stents in patients with st-segment-elevation myocardial infarction: eight-month follow-up in the Drug Elution and Distal Protection in Acute Myocardial Infarction (DEDICATION) trial. Circulation, 118(11), 1155-62. https://doi.org/10.1161/CIRCULATIONAHA.107.758698
Svane, A. S. P., Jahn, K., Deva, T., Malmendal, A., Otzen, D., Dittmer, J. & Nielsen, N. C. (2008). Early Stages of Amyloid Fibril Formation Studied by Liquid-State NMR: The Peptide Hormone Glucagon. Biophysical Journal, 95(1), 366 – 377. https://doi.org/10.1529/biophysj.107.122895
Knudsen, S. K., Westergaard, U. B., Frantzmann, M., Stensballe, A. & Otzen, D. (2008). Effect of glycosylation on biphysical and flocculative properties of the extracellular domain of Ag43. Biochemical Journal, (412), 563-577.
Dubin, G., Stec-Niemczyk, J., Kisielewska, M., Pustelny, K., Popowicz, GM., Bista, M., Kantyka, T., Boulware, KT., Stennicke, HR., Czarna, A., Phopaisarn, M., Daugherty, PS., Thøgersen, I., Enghild, J. J., Thornberry, N., Dubin, A. & Potempa, J. (2008). Enzymatic activity of the Staphylococcus aureus SplB serine protease is induced by substrates containing the sequence Trp-Glu-Leu-Gln. Journal of Molecular Biology, 379(30).
Schmid, M., Rougemaille, M., Libri, D. & Jensen, T. H. (2008). Estimating nuclear mRNA decay in S. cerevisiae. Methods in Enzymology.
Lorentzen, E. & Conti, E. (2008). Expression, reconstitution, and structure of an archaeal RNA degrading exosome. Meth. Enzymol., 447, 417-435.
Kliment, CR., Tobolewski, JM., Manni, ML., Tan, RJ., Enghild, J. J. & Oury, TD. (2008). Extracellular superoxide dismutase protects against matrix degradation of heparan sulfate in the lung. Antioxidants & Redox Signaling.
Stapulionis, R., Wang, Y., Dempsey, G. T., Khudaravalli, R., Nielsen, K. M., Cooperman, B. S., Goldman, Y. E. & Knudsen, C. R. (2008). Fast in vitro translation system immobilized on a surface via specific biotinylation of the ribosome. Biological Chemistry, 389(9), 1239-1249.
Sahana, G., Lund, M. S., Andersson-Eklund, L., Hastings, N., Fernandez, A., Iso-Touru, T., Thomsen, B., Viitala, S., Sørensen, P., Williams, J. L. & Vilkki, J. (2008). Fine Mapping QTL for mastitis resistance on BTA9 in three Nordic red cattle breeds. Animal Genetics, 39(4), 354-362. https://doi.org/10.1111/j.1365-2052.2008.01729.x
Arpanaei, A., Pillai, S., Meyer, R. L., Besenbacher, F., Bernbom, N., Jensen, R. L., Gram, L., Enghild, J. J., Petersen, S. V. & Kingshott, P. (2008). Fish Protein Adsorption to Different Surfaces and Anti-cell Adhesive Properties of Adsorbed Layers.. Paper presented at How to Look at Protein Adsorption - A Practical Approach, Copenhagen University, Copenhagen, Denmark.
Runager, K., Enghild, J. J. & Klintworth, G. (2008). Focus on molecules: Transforming growth factor beta induced protein (TGFBIp). Experimental Eye Research.
Kjeldbjerg, A., Villesen, P., Aagaard, L. & Pedersen, F. S. (2008). Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution. BMC Evolutionary Biology, 8(1), 266. https://doi.org/10.1186/1471-2148-8-266
Kadarmideen, H. N. (2008). Genetical systems biology in livestock: Application to gonadotrophin releasing hormone and reproduction. IET Systems Biology, 2(6), 423-441. https://doi.org/10.1049/iet-syb:20070072
Larsen, A. K., Lametsch, R., Elce, J. S., Larsen, J. K., Thomsen, B., Larsen, M. R., Lawson, M. A., Greer, P. A. & Ertbjerg, P. (2008). Genetic disruption of calpain correlates with loss of membrane blebbing and differential expression of RhoGDI-1, cofilin and tropomyosin. Biochemical Journal, 411, 657-666. https://doi.org/10.1042/BJ20070522
Zhukov, V. A., Borisov, A. Y., Kuznetsova, E. V., Madsen, L. H., Moffet, M. D., Ovchinnikova, E. S., Pinaev, A. G., Radutoiu, S., Rozov, S. M., Rychagova, T. S., Shtark, O. Y., Tsyganov, V. E., Voroshilova, V. A., Stougaard, J., Weeden, N. F. & Tikhonovich, I. A. (2008). GENOME SYNTENY OF PEA AND MODEL LEGUMES: FROM MUTATION THROUGH GENETIC MAPPING TO THE GENES. In FD. Dakora, SBM. Chimphango, AJ. Valentine, C. Elmerich & WE. Newton (Eds.), BIOLOGICAL NITROGEN FIXATION: TOWARDS POVERTY ALLEVIATION THROUGH SUSTAINABLE AGRICULTURE (pp. 223-224). Springer.
Schierup, M. H. & Vekemans, X. (2008). Genomic consequences of selection on self-incompatibility genes. Current Opinion in Plant Biology, 116-122. https://doi.org/10.1016/j.pbi.2008.01.003
Jonstrup, A. T., Thomsen, T., Wang, Y., Knudsen, B. R., Koch, J. & Andersen, A. H. (2008). Hairpin structures formed by alpha satellite DNA of human centromeres are cleaved by human topoisomerase II alpha. Nucleic Acids Research, 36(19), 6165-74. https://doi.org/10.1093/nar/gkn640
Rattan, S. (2008). Hormesis in aging. Ageing Research Reviews, 7(1), 63-78.
Berge, U., Kristensen, P. & Rattan, S. (2008). Hormetic modulation of differentiation of normal human epidermal keratinocytes undergoing replicative senescence in vitro. Experimental Gerontology, 43, 658-662.

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