Department of Molecular Biology and Genetics

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Latest peer-reviewed publications at MBG

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Peer-reviewed publications at MBG - all years

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Rattan, S. (2007). Homeostasis, homeodynamics, and aging. In Encyclopedia of Gerontology (pp. 696-699). Elsevier Inc., UK.
Rattan, S. & Ali, R. (2007). Hormetic prevention of molecular damage during cellular aging of human skin fibroblasts and keratinocytes. New York Academy of Sciences. Annals, 1100, 424-430.
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M. ... ENCODE Project Consortium (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447(7146), 799-816. https://doi.org/10.1038/nature05874
Blechingberg, J., Holm, I. E., Nielsen, K. B., Jensen, T. H., Jørgensen, A. L. & Nielsen, A. L. (2007). Identification and characterization of GFAPK, a novel glial fibrillary acidic protein isoform. Glia, 55(5), 497-507.
Bramsen, J. B., Laursen, M. B., Damgaard, C. K., Lena, S. W., Babu, B. R., Wengel, J. & Kjems, J. (2007). Improved silencing properties using small internally segmented interfering RNAs. Nucleic Acids Research, 35(17), 5886-5897. https://doi.org/10.1093/nar/gkm548
Ehlers, B. & Bataillon, T. (2007). ‘Inconstant males' and the maintenance of labilesex expression in subdioecious plants. New Phytologist. https://doi.org/10.1111/j.1469-8137.2007.01975.x
Ehlers, B. & Bataillon, T. (2007). 'Inconstant males' and the maintenance of labile sex expression in subdioecious plants. New Phytologist, 174, 194-211.
Sironen, A., Vilkki, J., Bendixen, C. & Thomsen, B. (2007). Infertile Finnish Yorkshire boars carry a full-length LINE-1 retrotransposon within the KPL2 gene. Molecular Genetics and Genomics, 278(4), 385-391. https://doi.org/10.1007/s00438-007-0256-7
Abad, M., Menéndez, C., Füchtbauer, A. C., Serrano, M., Füchtbauer, E.-M. & Palmero, I. (2007). Ing1 mediates p53 accumulation and chromatin modification in respones to oncogenic stress. Journal of Biological Chemistry, 282(42), 31060-31067.
Bojsen, A., Buesa, J., Montava, R., Kvistgaard, A. S., Kongsbak, M. B., Petersen, T. E., Heegaard, C. W. & Rasmussen, J. T. (2007). Inhibitory Activities of Bovine Macromolecular Whey Proteins on Rotavirus Infections In Vitro and In Vivo. Journal of Dairy Science, 90, 66-74.
Thaysen-Andersen M, M., Thøgersen, I., Lademann, U., Offenberg, H., Giessing, AM., Enghild, J. J., Nielsen, HJ., Brünner, N. & Højrup P., P. (2007). Investigating the biomarker potential of glycoproteins using comparative glycoprofiling - application to tissue inhibitor of metalloproteinases-1. Biochim. Biophys. Acta.
De Mita, S., Ronfort, J., McKhann, H. I., Poncet, C., El Malki, R. & Bataillon, T. (2007). Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula. Genetics, 177(4), 2123-33. https://doi.org/10.1534/genetics.107.076943
Lund, M. S., Sahana, G., Andersson-Eklund, L., Hastings, N., Fernandez, A., Schulman, N., Thomsen, B., Viitala, S., Williams, J. L., Sabry, A., Viinalass, H. & Vilkki, J. (2007). Joint Analysis of Quantitative Trait Loci for Clinical Mastitis and Somatic Cell Score on Five Chromosomes in Three Nordic Dairy Cattle Breeds. Journal of Dairy Science, 90, 5282-5290. https://doi.org/10.3168/jds.2007-0177
Gromadski, K. B., Schümmer, T., Strømgaard, A., Knudsen, C. R., Kinzy, T. G. & Rodnina, M. V. (2007). Kinetics of the interactions between yeast elongation factors 1A and 1Balpha, guanine nucleotides, and aminoacyl-tRNA. Journal of Biological Chemistry, 282(49), 35629-37. https://doi.org/10.1074/jbc.M707245200
Radutoiu, S., Madsen, L. H., Madsen, E. B., Jurkiewicz, A., Fukai, E., Quistgaard, E. M. H., Albrektsen, A. S., James, E. K., Thirup, S. & Stougaard, J. (2007). LysM domains mediate lipochitin-oligosaccharide recognition and Nfr genes extend the symbiotic host range. EMBO Journal, 26(17), 3923-35. https://doi.org/10.1038/sj.emboj.7601826
Beer, C. & Pedersen, L. (2007). Matrix fibronectin binds gammaretrovirus and assists in entry - new light on viral infections. J. Virol., 81(15), 8247-8257.
Laursen, K. B., Mielke, E., Iannaccone, P. & Füchtbauer, E.-M. (2007). Mechanism of transcriptional activation by the proto-oncogene twist1. Journal of Biological Chemistry, 282, 34623-34633.
Fedosov, S., Fedosova, N. U., Kräutler, B., Nexø, E. & Petersen, T. E. (2007). Mechanisms of discrimination between cobalamins and their natural analoques during their binding to the specific B12-transporting proteins. Biochemistry, 46(21), 6446-6458.
Desler, C., Munch-Petersen, B., Stevnsner, T. V., Matsui, S.-I., Kulawiec, M., Singh, K. & Rasmussen, L. J. (2007). Mitochondria as determinant of nucleotide metabolism and chromosomal stability. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 625, 112-124. https://doi.org/10.1016/j.mrfmmm.2007.06.002
Sehgal, P., Bang Nielsen, S., Pedersen, S., Wimmer, R. & Otzen, D. (2007). Modulation of cutinase structure and stability by phospholipid detergents. Biochim. Biophys. Acta., (1774), 1544-1554.
Howard, K. A., Dong, M., Oupicky, D., Bisht, H. S., Buss, C., Besenbacher, F. & Kjems, J. (2007). Nanocarrier stimuli-activated gene delivery. Small, 3(1), 54-7. https://doi.org/10.1002/smll.200600328
Nielsen, A. F., Leuschner, P. J. F. & Martinez, J. (2007). Not miR-ly a splicing factor: hnRNP A1 succumbs to microRNA temptation. Nature Structural and Molecular Biology, 14(7), 572-3. https://doi.org/10.1038/nsmb0707-572
Kehlet, C., Bjerring, M., Sivertsen, A. C., Kristensen, T., Enghild, J. J., Glaser, S. J., Khaneja, N. & Nielsen, N. C. (2007). Optimal control based NCO and NCA experiments for spectral assignment in biological solid-state NMR spectroscopy. Journal of Magnetic Resonance, 188(2), 216-230. https://doi.org/10.1016/j.jmr.2007.06.011
Agnholt, J., Kelsen, J., Schack, L., Hvas, C. L., Dahlerup, J. F. & Sørensen, E. S. (2007). Osteopontin, a protein with cytokine-like properties, is associated with inflammation in Crohn's disease. Scand. J. Immunol., 65, 453-60.
Lykke-Andersen, S. & Jensen, T. H. (2007). Overlapping pathways dictate termination of RNA polymerase II transcription: RNA polymerase II termination. Biochimie, 89(10), 1177-1182.
Møller, I. M., Jensen, P. E. & Hansson, A. (2007). Oxidative Modifications to Cellular Components in Plants. Annual Review of Plant Physiology and Plant Molecular Biology, 58, 459-481. https://doi.org/10.1146/annurev.arplant.58.032806.103946
Song, Y. J. C., Lundvig, D. M. S., Huang, Y., Gai, W. P., Blumbergs, P. C., Højrup, P., Otzen, D., Halliday, G. M. & Jensen, P. H. (2007). p25a Relocalizes in Oligodendroglia from Myelin to Cytoplasmic Inclusions in Multiple System Atrophy. American Journal of Pathology, (171), 1291-1303.
Skivesen, N., Têtu, A., Kristensen, M., Kjems, J., Frandsen, L. H. & Borel, P. I. (2007). Photonic-crystal waveguide biosensor. Optics Express, 15(6), 3169-3176.
Howard, K. A. & Kjems, J. (2007). Polycation-based nanoparticle delivery for improved RNA interference therapeutics. Expert Opinion on Biological Therapy, 7(12), 1811-1822. https://doi.org/10.1517/14712598.7.12.1811
Howard, K. A. & Kjems, J. (2007). Polycation-based nanoparticle delivery for improved RNAi therapeutics. Expert Opin. Biol. Ther, 7, 1811-1822.
Larsen, K., Madsen, L. B., Høj, A. & Bendixen, C. (2007). Porcine DJ-1: Cloning of PARK7 cDNA, sequence comparison, expression analysis and chromosomal localization. Cytogenetic and Genome Research, 116(1-2), 93-99. https://doi.org/10.1159/000097423
Gododkin, J., Cirera, S., Hedegaard, J., Gilchrist, M. J., Panitz, F., Jørgensen, C., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B. J., Havgaard, J. H., Rosenkilde, C., Wang, J., Li, H., Li, R., Liu, B., Hu, S. ... Fredholm, M. (2007). Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Genome Biology (Online Edition), 8(4), R45. https://doi.org/10.1186/gb-2007-8-4-r45
Wæhrens, L. N., Rasmussen, J. T., Heegaard, C. W. & Falborg, L. (2007). Preparation and in vitro evaluation of 99mTc-labelled bovine lactadherin as a novel radioligand for apoptosis detection. Journal of Labelled Compounds and Radiopharmaceuticals, 50, 211.
Gendron, C., Kashiwagi, M., Lim, N. H., Enghild, J. J., Thøgersen, I., Hughes, C., Catherson, B. & Nagase, H. (2007). Proteolytic activities of human ADAMTS-5: Comparative studies with human ADAMTS-4. Journal of Biological Chemistry.
Bisgaard, C., Jayatissa, M. N., Enghild, J. J., Sanchéz, C., Artemychyn, R. & Wiborg, O. (2007). Proteomic investigation of the ventral rat hippocampus links DRP-2 to escitalopram treatment resistance and SNAP to stress resilience in the chronic mild stress model of depression. Journal of Molecular Neuroscience, 32(2), 132-44.
Arendt, M., Rosenberg, R., Foldager, L., Perto, G. & Munk-Jørgensen, P. (2007). Psychopathology among cannabis-dependent treatment seekers and association with later substance abuse treatment. Journal of Substance Abuse Treatment, 32(2), 113-119.
Addison, W. N., Azari, F., Sørensen, E. S., Kaartinen, M. T. & McKee, M. D. (2007). Pyrophosphate inhibits mineralization of osteoblast cultures by binding to mineral, upregulating osteopontin and inhibiting alkaline phosphatase actvity. Journal of Biological Chemistry, 282, 15872-15883.
Nielsen, C. G., Christiansen, M. & Oxvig, C. (2007). Quantification of proteolytically active pregnancy-associated plasma protein-A using an assay based on quenched fluorescence. Clinical Chemistry, 53, 947-954.
Nielsen, C. G. & Oxvig, C. (2007). Quantitative analysis of insulin-like growth factor (IGF) modulated proteolysis of IGF binding protein-4 and -5 by pregnancy-associated plasma protein-A. Biochemistry, 46, 1982-80.
Hovgaard, M. B., Dong, M., Otzen, D. E. & Besenbacher, F. (2007). Quartz crystal microbalance studies of multilayer glucagon fibrillation at the solid-liquid interface. Biophysical Journal, 93(6), 2162-9. https://doi.org/10.1529/biophysj.107.109686
Hovgaard, M. B., Dong, M., Otzen, D. & Besenbacher, F. (2007). Quartz crystal microbalance studies of multilayer glucagons fibrillation at the solid-liquid interface. Biophysical Journal, 93(6), 2162.
Thaysen-Andersen, M., Thøgersen, I., Nielsen, HJ., Lademann, U., Brunner, N., Enghild, J. J. & Højrup, P. (2007). Rapid and individual-specific glycoprofiling of a low- abundant N-glycosylated protein tissue inhibitor of metalloproteinases-1. Mol. Cell. Proteomics.
Laursen, L. S., Kjær-Sørensen, K., Andersen, M. H. & Oxvig, C. (2007). Regulation of insulin-like growth factor (IGF) bioactivity by sequential proteolytic cleavage of IGF binding protein-4 and -5. Molecular Endocrinology, 21(5), 1246-1257.
Blechingberg, J., Lykke-Andersen, S., Jensen, T. H., Jørgensen, A. L. & Nielsen, A. L. (2007). Regulatory mechanisms for 3'-end alternative splicing and polyadenylation of the Glial Fibrillary Acidic Protein, GFAP, transcript. Nucleic Acids Research, 35(22), 7636-50. https://doi.org/10.1093/nar/gkm931
Hede, M. S., Petersen, R. L., Krüger, D., Andersen, F. F., Andersen, A. H. & Knudsen, B. R. (2007). Resolution of Holliday junction substrates by human topoisomerase I. Journal of Molecular Biology.
Andersen, E. S., Lind-Thomsen, A., Knudsen, B., Kristensen, S. E., Havgaard, J. H., Torarinsson, E., Larsen, N., Zwieb, C., Sestoft, P., Kjems, J. & Gorodkin, J. (2007). Semiautomated improvement of RNA alignments. RNA, 13, 1850-1859.
Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J., Hedegaard, J., Cirera, S., Thomsen, B., Madsen, L. B., Høj, A., Vingborg, R., Bujie, Z., Wang, X., Wang, X. F., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M. ... Bendixen, C. (2007). SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. Bioinformatics, 23(13), i387-i391. https://doi.org/10.1093/bioinformatics/btm192
Søe, R., Mosley, R. T., Justice, M., Nielsen-Kahn, J., Shastry, M., Merrill, A. R. & Andersen, G. R. (2007). Sordarin derivatives induce a novel conformation of the yeast ribosome translocation factor eEF2. Journal of Biological Chemistry, 282, 657-666.
Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R. ... Stadler, P. F. (2007). Structured RNAs in the ENCODE selected regions of the human genome. Genome Research, 17(6), 852-64. https://doi.org/10.1101/gr.5650707
Berge, U., Behrens, J. & Rattan, S. (2007). Sugar-induced premature aging and altered differentiation in human epidermal keratinocytes. New York Academy of Sciences. Annals, 1100, 524-529.

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Lisbeth Heilesen