Martin, M., Nilsson, S. C., Eikrem, D., Fromell, K.
, Scavenius, C., Vogt, L. M., Bielecka, E., Potempa, J.
, Enghild, J. J., Nilsson, B., Ekdahl, K. N., Kapetanovic, M. C. & Blom, A. M. (2023).
Citrullination of C1-inhibitor as a mechanism of impaired complement regulation in rheumatoid arthritis.
Frontiers in Immunology,
14, Article 1203506.
https://doi.org/10.3389/fimmu.2023.1203506Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L. ... Wu, D. D. (2023).
Comparative genomics reveals the hybrid origin of a macaque group.
Science Advances,
9(22), Article eadd3580.
https://doi.org/10.1126/sciadv.add3580Stock, C., Heger, T., Hansen, S. B., Larsen, S. T., Habeck, M., Dieudonné, T. L. A., Driller, R. & Nissen, P. (2023).
Fast-forward on P-type ATPases: recent advances on structure and function.
Biochemical Society Transactions,
51(3), 1347-1360.
https://doi.org/10.1042/BST20221543
Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S.
, Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J. ... Rogers, J. (2023).
Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons.
Science (New York, N.Y.),
380(6648), Article eabn8153.
https://doi.org/10.1126/science.abn8153
Cheng, Z., Ferris, C., Crowe, M. A.
, Ingvartsen, K. L., Grelet, C., Vanlierde, A.
, Foldager, L., Becker, F., Wathes, D. C. & GplusE Consortium (2023).
Hepatic global transcriptomic profiles of Holstein cows according to parity reveal age-related changes in early lactation.
International Journal of Molecular Sciences ,
24(12), Article 9906.
https://doi.org/10.3390/ijms24129906Hao, D., Wang, X., Yang, Y., Chen, H.
, Thomsen, B. & Holm, L. E. (2023).
MicroRNA sequence variation can impact interactions with target mRNA in cattle.
Gene,
868, Article 147373.
https://doi.org/10.1016/j.gene.2023.147373
Rivas-González, I., Rousselle, M., Li, F., Zhou, L.
, Dutheil, J. Y., Munch, K., Shao, Y., Wu, D.
, Schierup, M. H. & Zhang, G. (2023).
Pervasive incomplete lineage sorting illuminates speciation and selection in primates.
Science,
380(6648), eabn4409. Article eabn4409.
https://doi.org/10.1126/science.abn4409
Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B. L., Shao, F., Chen, J. W., Chen, C. Y., Bi, X., Zhuang, X. L., Zhu, H. L., Hu, J., Sun, Z., Li, X., Wang, D.
, Rivas-González, I., Wang, S., Wang, Y. M., Chen, W. ... Wu, D. D. (2023).
Phylogenomic analyses provide insights into primate evolution.
Science (New York, N.Y.),
380(6648), 913-924.
https://doi.org/10.1126/science.abn6919Hayeck, T. J., Busby, G. B., Chun, S., Lewis, A. C. F., Roberts, M. C.
& Vilhjálmsson, B. J. (2023).
Polygenic Risk Scores: Genomes to Risk Prediction.
Clinical Chemistry,
69(6), 551–557.
https://doi.org/10.1093/clinchem/hvad049Ding, Y., Hou, K., Xu, Z., Pimplaskar, A., Petter, E., Boulier, K.
, Privé, F., Vilhjálmsson, B. J., Olde Loohuis, L. M. & Pasaniuc, B. (2023).
Polygenic scoring accuracy varies across the genetic ancestry continuum.
Nature,
618, 774-781.
https://doi.org/10.1038/s41586-023-06079-4Gielnik, M., Szymańska, A., Dong, X., Jarvet, J., Svedružić, Ž. M., Gräslund, A., Kozak, M. & Wärmländer, S. K. T. S. (2023).
Prion Protein Octarepeat Domain Forms Transient β-Sheet Structures upon Residue-Specific Binding to Cu(II) and Zn(II) Ions.
Biochemistry,
62(11), 1689-1705.
https://doi.org/10.1021/acs.biochem.3c00129
Bavnhøj, L., Driller, J. H., Zuzic, L., Stange, A. D., Schiøtt, B. & Pedersen, B. P. (2023).
Structure and sucrose binding mechanism of the plant SUC1 sucrose transporter.
Nature Plants,
9(6), 938-950.
https://doi.org/10.1038/s41477-023-01421-0
Romon-Ochoa, P., Smith, O., Lewis, A., Kupper, Q.
, Shamsi, W., Rigling, D., Pérez-Sierra, A. & Ward, L. (2023).
Temperature Effects on the Cryphonectria hypovirus 1 Accumulation and Recovery within Its Fungal Host, the Chestnut Blight Pathogen Cryphonectria parasitica.
Viruses,
15(6), Article 1260.
https://doi.org/10.3390/v15061260Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. ... Farh, K. K. H. (2023).
The landscape of tolerated genetic variation in humans and primates.
Science (New York, N.Y.),
380(6648), Article abn8197.
https://doi.org/10.1126/science.abn8197Olesen, H. G., Michailidou, I., Zelek, W. M., Vreijling, J., Ruizendaal, P., de Klein, F., Marquart, J. A., Kuipers, T. B., Mei, H., Zhang, Y., Ahasan, M., Johnson, K. K., Wang, Y., Morgan, B. P., van Dijk, M., Fluiter, K.
, Andersen, G. R. & Baas, F. (2023).
Development, Characterization, and in vivo Validation of a Humanized C6 Monoclonal Antibody that Inhibits the Membrane Attack Complex.
Journal of Innate Immunity,
15(1), 16-36.
https://doi.org/10.1159/000524587
Zuzic, L., Marzinek, J., Anand, G., Warwicker, J. & Bond, P. J. (2023).
A pH-dependent cluster of charges in a conserved cryptic pocket on flaviviral envelopes.
eLife,
12, Article e82447.
https://doi.org/10.7554/eLife.82447
Fruergaard, M. U., Nielsen, C. J. F., Kjeldsen, C. R., Iversen, L., Andersen, J. L. & Nissen, P. (2023).
Activation and inhibition of the C-terminal kinase domain of p90 ribosomal S6 kinases.
Life Science Alliance,
6(5), Article e202201425.
https://doi.org/10.26508/lsa.202201425
Kelly, S., Hansen, S. B., Rübsam, H., Saake, P., Pedersen, E. B.
, Gysel, K., Madland, E., Wu, S., Wawra, S.
, Reid, D., Sullivan, J. T.
, Blahovska, Z., Vinther, M., Muszynski, A., Azadi, P., Thygesen, M. B., Aachmann, F. L., Ronson, C. W., Zuccaro, A.
... Stougaard, J. (2023).
A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus.
PLoS Biology,
21(5), Article e3002127.
https://doi.org/10.1371/journal.pbio.3002127
Sun, C., Desch, K., Nassim-Assir, B., Giandomenico, S. L., Nemcova, P., Langer, J. D. & Schuman, E. M. (2023).
An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses.
Science,
380(6647), Article 811.
https://doi.org/10.1126/SCIENCE.ADF2018
Keller, J. G.
, Petersen, K. V., Mizielinski, K.
, Thiesen, C., Bjergbæk, L., Reguera, R. M., Pérez-Pertejo, Y., Balaña-Fouce, R., Trejo, A., Masdeu, C., Alonso, C.
, Knudsen, B. R. & Tesauro, C. (2023).
Gel-Free Tools for Quick and Simple Screening of Anti-Topoisomerase 1 Compounds.
Pharmaceuticals,
16(5), Article 657.
https://doi.org/10.3390/ph16050657Skovbjerg, C. K., Angra, D., Robertson-Shersby-Harvie, T., Kreplak, J., Keeble-Gagnère, G., Kaur, S., Ecke, W., Windhorst, A., Nielsen, L. K., Schiemann, A., Knudsen, J., Gutierrez, N., Tagkouli, V.
, Fechete, L. I., Janss, L., Stougaard, J., Warsame, A., Alves, S., Khazaei, H.
... Andersen, S. U. (2023).
Genetic analysis of global faba bean diversity, agronomic traits and selection signatures.
Theoretical and Applied Genetics,
136(5), Article 114.
https://doi.org/10.1007/s00122-023-04360-8
Chen, Y., Atashi, H., Grelet, C., Mota, R. R., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023).
Genome-wide association study and functional annotation analyses for nitrogen efficiency index and its composition traits in dairy cattle.
Journal of Dairy Science,
106(5), 3397-3410.
https://doi.org/10.3168/jds.2022-22351Wedge, E.
, Ahmadov, U., Hansen, T. B., Gao, Z., Tulstrup, M., Côme, C., Nonavinkere Srivatsan, S., Ahmed, T., Jespersen, J. S., Schlotmann, B. C., Schöllkopf, C., Raaschou-Jensen, K., Ødum, N.
, Kjems, J., Bak, R. O., Walter, M. J., Grønbæk, K.
& Kristensen, L. S. (2023).
Impact of U2AF1 mutations on circular RNA expression in myelodysplastic neoplasms.
Leukemia,
37(5), 1113-1125.
https://doi.org/10.1038/s41375-023-01866-4Lassen, J. K., Wang, T., Nielsen, K. L., Hasselstrøm, J. B., Johannsen, M. & Villesen, P. (2023).
Large-Scale metabolomics: Predicting biological age using 10,133 routine untargeted LC–MS measurements.
Aging Cell,
22(5), Article e13813.
https://doi.org/10.1111/acel.13813
Larsen, T. V., Daugaard, T. F., Gad, H. H., Hartmann, R. & Nielsen, A. L. (2023).
PD-L1 and PD-L2 immune checkpoint protein induction by type III interferon in non-small cell lung cancer cells.
Immunobiology,
228(3), Article 152389.
https://doi.org/10.1016/j.imbio.2023.152389
Sampedro Vallina, N., McRae, E. K. S., Hansen, B. K., Boussebayle, A. & Andersen, E. S. (2023).
RNA origami scaffolds facilitate cryo-EM characterization of a Broccoli-Pepper aptamer FRET pair.
Nucleic Acids Research,
51(9), 4613-4624.
https://doi.org/10.1093/nar/gkad224
Zhang, X., Galenkamp, N. S., Heide, N. J. V. D.
, Valero Moreno, J., Maglia, G.
& Kjems, J. (2023).
Specific Detection of Proteins by a Nanobody-Functionalized Nanopore Sensor.
ACS Nano,
17(10), 9167-9177.
https://doi.org/10.1021/acsnano.2c12733
Ng, K. W., Boumelha, J., Enfield, K. S. S., Almagro, J., Cha, H., Pich, O., Karasaki, T., Moore, D. A., Salgado, R., Sivakumar, M., Young, G., Molina-Arcas, M., de Carné Trécesson, S., Anastasiou, P., Fendler, A., Au, L., Shepherd, S. T. C., Martínez-Ruiz, C., Puttick, C. ... CAPTURE Consortium (2023).
Antibodies against endogenous retroviruses promote lung cancer immunotherapy.
Nature,
616(7957), 563-573.
https://doi.org/10.1038/s41586-023-05771-9Mohammad-Beigi, H., Wijaya, W., Madsen, M.
, Hayashi, Y., Li, R., Maria Rovers, T. A., Jæger, T. C., Buell, A. K., Hougaard, A. B., Kirkensgaard, J. J. K., Westh, P., Ipsen, R. & Svensson, B. (2023).
Association of caseins with β-lactoglobulin influenced by temperature and calcium ions: A multi-parameter analysis.
Food Hydrocolloids,
137, Article 108373.
https://doi.org/10.1016/j.foodhyd.2022.108373Al-Sawaf, O., Weiss, J., Skrzypski, M., Lam, J. M., Karasaki, T., Zambrana, F., Kidd, A. C., Frankell, A. M., Watkins, T. B. K., Martínez-Ruiz, C., Puttick, C., Black, J. R. M., Huebner, A., Bakir, M. A., Collins, S., Veeriah, S., Magno, N., Naceur-Lombardelli, C., Prymas, P. ... TRACERx Consortium (2023).
Body composition and lung cancer-associated cachexia in TRACERx.
Nature Medicine,
29(4), 846-858.
https://doi.org/10.1038/s41591-023-02232-8Afonine, P. V.
, Gobet, A., Moissonnier, L., Martin, J., Poon, B. K. & Chaptal, V. (2023).
Conformational space exploration of cryo-EM structures by variability refinement.
Biochimica et biophysica acta - Biomembranes,
1865(4), 184133. Article 184133.
https://doi.org/10.1016/j.bbamem.2023.184133Hernández-Castellano, L. E., Sørensen, M. T., Foldager, L., Herskin, M. S., Gross, J. J., Bruckmaier, R. M.
& Larsen, M. (2023).
Effects of feeding level, milking frequency, and single injection of cabergoline on blood metabolites, hormones, and minerals around dry-off in dairy cows.
Journal of Dairy Science,
106(4), 2919-2932.
https://doi.org/10.3168/jds.2022-22648
Karasaki, T., Moore, D. A., Veeriah, S., Naceur-Lombardelli, C., Toncheva, A., Magno, N., Ward, S., Bakir, M. A., Watkins, T. B. K., Grigoriadis, K., Huebner, A., Hill, M. S., Frankell, A. M., Abbosh, C., Puttick, C., Zhai, H., Gimeno-Valiente, F., Saghafinia, S., Kanu, N. ... TRACERx Consortium (2023).
Evolutionary characterization of lung adenocarcinoma morphology in TRACERx.
Nature Medicine,
29(4), 833-845.
https://doi.org/10.1038/s41591-023-02230-wMartínez-Ruiz, C., Black, J. R. M., Puttick, C., Hill, M. S., Demeulemeester, J., Larose Cadieux, E., Thol, K., Jones, T. P., Veeriah, S., Naceur-Lombardelli, C., Toncheva, A., Prymas, P., Rowan, A., Ward, S., Cubitt, L., Athanasopoulou, F., Pich, O., Karasaki, T., Moore, D. A. ... TRACERx Consortium (2023).
Genomic-transcriptomic evolution in lung cancer and metastasis.
Nature,
616(7957), 543-552.
https://doi.org/10.1038/s41586-023-05706-4Frankell, A. M., Dietzen, M., Al Bakir, M., Lim, E. L., Karasaki, T., Ward, S., Veeriah, S., Colliver, E., Huebner, A., Bunkum, A., Hill, M. S., Grigoriadis, K., Moore, D. A., Black, J. R. M., Liu, W. K., Thol, K., Pich, O., Watkins, T. B. K., Naceur-Lombardelli, C. ... TRACERx Consortium (2023).
The evolution of lung cancer and impact of subclonal selection in TRACERx.
Nature,
616(7957), 525-533.
https://doi.org/10.1038/s41586-023-05783-5Al Bakir, M., Huebner, A., Martínez-Ruiz, C., Grigoriadis, K., Watkins, T. B. K., Pich, O., Moore, D. A., Veeriah, S., Ward, S., Laycock, J., Johnson, D., Rowan, A., Razaq, M., Akther, M., Naceur-Lombardelli, C., Prymas, P., Toncheva, A., Hessey, S., Dietzen, M. ... TRACERx Consortium (2023).
The evolution of non-small cell lung cancer metastases in TRACERx.
Nature,
616(7957), 534-542.
https://doi.org/10.1038/s41586-023-05729-xAbbosh, C., Frankell, A. M., Harrison, T.
, Kisistok, J., Garnett, A., Johnson, L., Veeriah, S., Moreau, M., Chesh, A., Chaunzwa, T. L., Weiss, J., Schroeder, M. R., Ward, S., Grigoriadis, K., Shahpurwalla, A., Litchfield, K., Puttick, C., Biswas, D., Karasaki, T. ... TRACERx Consortium (2023).
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
Nature,
616(7957), 553-562.
https://doi.org/10.1038/s41586-023-05776-4Jayakodi, M., Golicz, A. A., Kreplak, J.
, Fechete, L. I., Angra, D., Bednář, P.
, Bornhofen, E., Zhang, H., Boussageon, R., Kaur, S., Cheung, K., Čížková, J., Gundlach, H., Hallab, A., Imbert, B., Keeble-Gagnère, G., Koblížková, A., Kobrlová, L., Krejčí, P.
... Andersen, S. U. (2023).
The giant diploid faba genome unlocks variation in a global protein crop.
Nature,
615(7953), 652-659.
https://doi.org/10.1038/s41586-023-05791-5Bergeron, L. A.
, Besenbacher, S., Zheng, J., Li, P.
, Bertelsen, M. F., Quintard, B., Hoffman, J. I., Li, Z., St. Leger, J., Shao, C., Stiller, J.
, Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2023).
Evolution of the germline mutation rate across vertebrates.
Nature,
615(7951), 285-291.
https://doi.org/10.1038/s41586-023-05752-ySørensen, S. G., Shrikhande, A.
, Poulsgaard, G. A., Christensen, M. H., Bertl, J., Laursen, B. E., Hoffmann, E. R.
& Pedersen, J. S. (2023).
Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns.
eLife,
12, Article e81224.
https://doi.org/10.7554/elife.81224
Holm, S., Larsen, R. M.
, Holst, C. M., Heide-Jørgensen, M. P., Steffensen, J. F.
, Stevnsner, T. & Larsen, K. (2023).
Bowhead NEIL1: molecular cloning, characterization, and enzymatic properties.
Biochimie,
206, 136-149.
https://doi.org/10.1016/j.biochi.2022.10.014
