Department of Molecular Biology and Genetics

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Latest peer-reviewed publications at MBG

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Rasmussen, H. Ø., Otzen, D. E. & Pedersen, J. S. (2022). Induction, inhibition, and incorporation: Different roles for anionic and zwitterionic lysolipids in the fibrillation of the functional amyloid FapC. The Journal of Biological Chemistry, 298(2), Article 101569. https://doi.org/10.1016/j.jbc.2022.101569
Gupta, K. J., Kaladhar, V. C., Fitzpatrick, T. B., Fernie, A. R., Møller, I. M. & Loake, G. J. (2022). Nitric oxide regulation of plant metabolism. Molecular Plant, 15(2), 228-242. https://doi.org/10.1016/j.molp.2021.12.012
Cavassim, M. I. A., Baker, Z., Hoge, C., Schierup, M. H., Schumer, M. & Przeworski, M. (2022). PRDM9 losses in vertebrates are coupled to those of paralogs ZCWPW1 and ZCWPW2. Proceedings of the National Academy of Sciences (PNAS), 119(9), Article e2114401119. https://doi.org/10.1073/pnas.2114401119
Gockert, M., Schmid, M., Jakobsen, L., Jens, M., Andersen, J. S. & Jensen, T. H. (2022). Rapid factor depletion highlights intricacies of nucleoplasmic RNA degradation. Nucleic Acids Research, 50(3), 1583-1600. https://doi.org/10.1093/nar/gkac001
Kristoffersen, E. L., Burman, M., Noy, A. & Holliger, P. (2022). Rolling Circle RNA Synthesis Catalysed by RNA. eLife, 11, Article e75186. https://doi.org/10.7554/ELIFE.75186
Jakobsen, A. K., Yuusufi, S., Madsen, L. B., Meldgaard, P., Knudsen, B. R. & Stougaard, M. (2022). TDP1 and TOP1 as targets in anticancer treatment of NSCLC: Activity and protein level in normal and tumor tissue from 150 NSCLC patients correlated to clinical data. Lung Cancer, 164, 23-32. https://doi.org/10.1016/j.lungcan.2021.12.010, https://doi.org/10.1016/j.lungcan.2021.12.010
Chen, J., Bataillon, T., Glémin, S. & Lascoux, M. (2022). What does the distribution of fitness effects of new mutations reflect? Insights from plants. New Phytologist, 233(4), 1613-1619. https://doi.org/10.1111/nph.17826
Chaptal, V., Zampieri, V., Wiseman, B., Orelle, C., Martin, J., Nguyen, K.-A., Gobet, A., Di Cesare, M., Magnard, S., Javed, W., Eid, J., Kilburg, A., Peuchmaur, M., Marcoux, J., Monticelli, L., Hogbom, M., Schoehn, G., Jault, J.-M., Boumendjel, A. & Falson, P. (2022). Substrate-bound and substrate-free outward-facing structures of a multidrug ABC exporter. Science Advances, 8(4), eabg9215. Article eabg9215. https://doi.org/10.1126/sciadv.abg9215
Chen, J., Bataillon, T., Glémin, S. & Lascoux, M. (2022). Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations. Genome Biology and Evolution, 14(1), Article evab151. https://doi.org/10.1093/gbe/evab151
Nørgård, M., Steffensen, L. B., Hansen, D. R., Füchtbauer, E. M., Engelund, M. B., Dimke, H., Andersen, D. C. & Svenningsen, P. (2022). A new transgene mouse model using an extravesicular EGFP tag enables affinity isolation of cell-specific extracellular vesicles. Scientific Reports, 12, Article 496. https://doi.org/10.1038/s41598-021-04512-0
Mohammad-Beigi, H., Zanganeh, M., Scavenius, C., Eskandari, H., Farzadfard, A., Shojaosadati, S. A., Enghild, J. J., Otzen, D. E., Buell, A. K. & Sutherland, D. S. (2022). A Protein Corona Modulates Interactions of α-Synuclein with Nanoparticles and Alters the Rates of the Microscopic Steps of Amyloid Formation. ACS Nano, 16(1), 1102-1118. https://doi.org/10.1021/acsnano.1c08825
Nagaraj, M., Najarzadeh, Z., Pansieri, J., Biverstål, H., Musteikyte, G., Smirnovas, V., Matthews, S., Emanuelsson, C., Johansson, J., Buxbaum, J. N., Morozova-Roche, L. & Otzen, D. E. (2022). Chaperones mainly suppress primary nucleation during formation of functional amyloid required for bacterial biofilm formation. Chemical Science, 13(2), 536-553. https://doi.org/10.1039/d1sc05790a
Wimberley, T., Brikell, I., Pedersen, E. M., Agerbo, E., Vilhjálmsson, B. J., Albiñana, C., Privé, F., Thapar, A., Langley, K., Riglin, L., Simonsen, M., Nielsen, H. S., Børglum, A. D., Nordentoft, M., Mortensen, P. B. & Dalsgaard, S. (2022). Early-Life Injuries and the Development of Attention-Deficit/Hyperactivity Disorder. The Journal of Clinical Psychiatry, 83(1), Article 21m14033. https://doi.org/10.4088/JCP.21m14033
Schendel, D., Munk Laursen, T., Albiñana, C., Vilhjalmsson, B., Ladd-Acosta, C., Fallin, M. D., Benke, K., Lee, B., Grove, J., Kalkbrenner, A., Ejlskov, L., Hougaard, D., Bybjerg-Grauholm, J., Baekvad-Hansen, M., Børglum, A. D., Werge, T., Nordentoft, M., Mortensen, P. B. & Agerbo, E. (2022). Evaluating the interrelations between the autism polygenic score and psychiatric family history in risk for autism. Autism Research, 15(1), 171-182. https://doi.org/10.1002/aur.2629
Dahl, M., Husby, S., Eskelund, C. W., Besenbacher, S., Fjelstrup, S., Côme, C., Ek, S., Kolstad, A., Räty, R., Jerkeman, M., Geisler, C. H., Kjems, J., Kristensen, L. S. & Grønbæk, K. (2022). Expression patterns and prognostic potential of circular RNAs in mantle cell lymphoma: a study of younger patients from the MCL2 and MCL3 clinical trials. Leukemia, 36(1), 177-188. https://doi.org/10.1038/s41375-021-01311-4
Sønderby, T. V., Rasmussen, H. Ø., Frank, S. A., Skov Pedersen, J. & Otzen, D. E. (2022). Folding steps in the fibrillation of functional amyloid: denaturant sensitivity reveals common features in nucleation and elongation. Journal of Molecular Biology, 434(2), Article 167337. https://doi.org/10.1016/j.jmb.2021.167337
Petersen, G., Shyama Prasad Rao, R., Anderson, B., Zervas, A., Seberg, O., Rasmusson, A. G. & Max Møller, I. (2022). Genes from oxidative phosphorylation complexes II-V and two dual-function subunits of complex I are transcribed in Viscum album despite absence of the entire mitochondrial holo-complex I. Mitochondrion, 62, 1-12. https://doi.org/10.1016/j.mito.2021.10.006
Aminzadeh, A., Larsen, C. E., Boesen, T. & Jørgensen, R. (2022). High-resolution structure of native toxin A from Clostridioides difficile. EMBO Reports, 23(1), Article e53597. https://doi.org/10.15252/embr.202153597
Najarzadeh, Z., Mohammad-Beigi, H., Pedersen, J. N., Christiansen, G., Pedersen, J. S., Nielsen, J. & Otzen, D. E. (2022). Interaction of membrane vesicles with the Pseudomonas functional amyloid protein FapC facilitates amyloid formation. BBA advances, 2, Article 100055. https://doi.org/10.1016/j.bbadva.2022.100055
Ding, Y., Hou, K., Burch, K. S., Lapinska, S., Privé, F., Vilhjálmsson, B., Sankararaman, S. & Pasaniuc, B. (2022). Large uncertainty in individual polygenic risk score estimation impacts PRS-based risk stratification. Nature Genetics, 54(1), 30–39 . https://doi.org/10.1038/s41588-021-00961-5
Moeskjær, S., Skovbjerg, C. K., Tausen, M., Wind, R., Roulund, N., Janss, L. & Andersen, S. U. (2022). Major effect loci for plant size before onset of nitrogen fixation allow accurate prediction of yield in white clover. Theoretical and Applied Genetics, 135(1), 125-143. https://doi.org/10.1007/s00122-021-03955-3
Meron, E., Thaysen, M., Angeli, S., Antebi, A., Barzilai, N., Baur, J. A., Bekker-Jensen, S., Birkisdottir, M., Bischof, E., Bruening, J., Brunet, A., Buchwalter, A., Cabreiro, F., Cai, S., Chen, B. H., Ermolaeva, M., Ewald, C. Y., Ferrucci, L., Florian, M. C. ... Scheibye-Knudsen, M. (2022). Meeting Report: Aging Research and Drug Discovery. Aging, 14(2), 532-543. https://doi.org/10.18632/aging.203859
Privé, F., Aschard, H., Carmi, S., Folkersen, L., Hoggart, C., O'Reilly, P. F. & Vilhjálmsson, B. J. (2022). Portability of 245 polygenic scores when derived from the UK Biobank and applied to 9 ancestry groups from the same cohort. American Journal of Human Genetics, 109(1), 12-23. https://doi.org/10.1016/j.ajhg.2021.11.008
Blokland, G. A. M., Grove, J., Chen, C. Y., Cotsapas, C., Tobet, S., Handa, R., Schizophrenia Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, Sex Differences Cross-Disorder Analysis Group of the Psychiatric Genomics Consortium & iPSYCH (2022). Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders. Biological Psychiatry, 91(1), 102-117. https://doi.org/10.1016/j.biopsych.2021.02.972
Winkler, M. B. L., Nel, L., Frain, K. M., Dedic, E., Olesen, E. & Pedersen, B. P. (2022). Sterol uptake by the NPC system in eukaryotes: a Saccharomyces cerevisiae perspective. FEBS Letters, 596(2), 160-179. https://doi.org/10.1002/1873-3468.14253
Braunger, K., Ahn, J., Jore, M. M., Johnson, S., Tang, T. T. L., Pedersen, D. V., Andersen, G. R. & Lea, S. M. (2022). Structure and function of a family of tick-derived complement inhibitors targeting properdin. Nature Communications, 13, Article 317. https://doi.org/10.1038/s41467-021-27920-2
Thodberg, K., Foldager, L., Fogsgaard, K. K., Gaillard, C. & Herskin, M. S. (2022). Temperature conditions during commercial transportation of cull sows to slaughter. Computers and Electronics in Agriculture, 192, Article 106626. https://doi.org/10.1016/j.compag.2021.106626
Bergeron, L. A., Besenbacher, S., Turner, T. N., Versoza, C. J., Wang, R. J., Price, A. L., Armstrong, E., Riera, M., Carlson, J., Chen, H. Y., Hahn, M. W., Harris, K., Kleppe, A. S., López-Nandam, E. H., Moorjani, P., Pfeifer, S. P., Tiley, G. P., Yoder, A. D., Zhang, G. & Schierup, M. H. (2022). The mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates. eLife, 11, Article e73577. https://doi.org/10.7554/eLife.73577
Hansen, E. K. B., Fredsøe, J. H., Okholm, T. L. H., Ulhøi, B. P., Klingenberg, S., Jensen, J. B., Kjems, J., Bouchelouche, K., Borre, M., Damgaard, C. K., Pedersen, J. S., Kristensen, L. S. & Sørensen, K. D. (2022). The transcriptional landscape and biomarker potential of circular RNAs in prostate cancer. Genome Medicine, 14(1), Article 8. https://doi.org/10.1186/s13073-021-01009-3
Pierre-Ferre, S., Collins, B., Lukacsovich, D., Wen, SA., Chai, Y., Winterer, J., Auerbach, B., Li, M., Yan, J., Pedersen, L., Földy, C. & Brown, S. A. (2022). A single atypical phosphoswitch in specific SCN neurons gates winter seasonality in mice. Poster session presented at Society for Research on Biological Rhythms Biennial Conference, Amelia Island, Florida, United States.
Rasmusson, A. G., Møller, I. M. & Widell, S. (2022). Assessment of Respiratory Enzymes in Intact Cells by Permeabilization with Alamethicin. In O. Van Aken & A. G. Rasmusson (Eds.), Plant Mitochondria (pp. 77-84). Humana Press. https://doi.org/10.1007/978-1-0716-1653-6_7
Bofill-De Ros, X., Hong, Z., Birkenfeld, B., Alamo-Ortiz, S., Yang, A., Dai, L. & Gu, S. (2022). Flexible pri-miRNA structures enable tunable production of 5' isomiRs. RNA Biology, 19(1), 279-289. https://doi.org/10.1080/15476286.2022.2025680, https://doi.org/10.1080/15476286.2022.2025680
Cardinale, S. & Kadarmideen, H. N. (2022). Host Genome–Metagenome Analyses Using Combinatorial Network Methods Reveal Key Metagenomic and Host Genetic Features for Methane Emission and Feed Efficiency in Cattle. Frontiers in Genetics, 13, Article 795717. https://doi.org/10.3389/fgene.2022.795717
Rasmusson, A. G., Hao, M. & Møller, I. M. (2022). Integrity Assessment of Isolated Plant Mitochondria. In O. Van Aken & A. G. Rasmusson (Eds.), Plant Mitochondria (pp. 51-62). Humana Press. https://doi.org/10.1007/978-1-0716-1653-6_5
Hansen, S. B. & Andersen, K. R. (2022). Introducing Cysteines into Nanobodies for Site-Specific Labeling. In G. Hussack & K. A. Henry (Eds.), Single-Domain Antibodies: Methods and Protocols (pp. 327-343). Humana Press. https://doi.org/10.1007/978-1-0716-2075-5_16
Rabaglino, M. B., Secher, J. B. M., Hyttel, P. & Kadarmideen, H. (2022). In vitro- and in vivo-produced male dairy calves show molecular differences in the hepatic and muscular energy regulation. Biology of Reproduction, 107(4), 1113–1124. https://doi.org/10.1093/biolre/ioac131
Rasmusson, A. G., Møller, I. M. & Widell, S. (2022). Isolation of Highly Purified, Intact, and Functional Mitochondria from Potato Tubers Using a Two-in-One Percoll Density Gradient. In O. Van Aken & A. G. Rasmusson (Eds.), Plant Mitochondria (pp. 39-50). Humana Press. https://doi.org/10.1007/978-1-0716-1653-6_4
Ferrando, B., Møller, I. M. & Stevnsner, T. (2022). Measuring the Activity of DNA Repair Enzymes in Isolated Mitochondria. In Plant Mitochondria (pp. 321-334). Humana Press. https://doi.org/10.1007/978-1-0716-1653-6_21
Sanchez-Roman, I., Ferrando, B., Holst, C. M., Mengel-From, J., Rasmussen, S. H., Thinggaard, M., Bohr, V. A., Christensen, K. & Stevnsner, T. (2022). Molecular markers of DNA repair and brain metabolism correlate with cognition in centenarians. GeroScience, 44(1), 103-125. https://doi.org/10.1007/s11357-021-00502-2
Gobet, A., Jaxel, C., Magnard, S., Garrigos, M., Orlowski, S., Jamin, N., Falson, P. & Chaptal, V. (2022). Overexpression of the ABC Transporter BmrA Within Intracellular Caveolae in Escherichia coli. In Heterologous Expression of Membrane Proteins (Vol. 2507, pp. 79-89). Springer. https://doi.org/10.1007/978-1-0716-2368-8_5
Alam, P., Holst, M. R., Lauritsen, L., Nielsen, J., Nielsen, S. S. E., Jensen, P. H., Brewer, J. R., Otzen, D. E. & Nielsen, M. S. (2022). Polarized α-synuclein trafficking and transcytosis across brain endothelial cells via Rab7-decorated carriers. Fluids and Barriers of the CNS, 19(1), Article 37. https://doi.org/10.1186/s12987-022-00334-y
Keller-Socin, J. G., Petersen, K. V., Knudsen, B. R. & Tesauro, C. (2022). Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer. In Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer InTechOpen. https://doi.org/10.5772/intechopen.105758
Tesch-Römer, C., Wahl, H.-W., Rattan, S. & Ayalon, L. (2022). Successful Ageing: Ambition and Ambivalence. Oxford University Press. https://doi.org/10.1093/med/9780192897534.001.0001
Hait, A. S., Olagnier, D., Sancho-Shimizu, V., Skipper, K. A., Helleberg, M., Larsen, S. M., Bodda, C., Moldovan, L. I., Ren, F., Brinck Andersen, N.-S., Thomsen, M. M., Freytag, M. R., Darmalinggam, S., Parkes, I., Kadekar, D. D., Rahbek, S. H., van der Horst, D., Kristensen, L. S., Eriksson, K. ... Mogensen, T. H. (2021). Defects in LC3B2 and ATG4A underlie HSV2 meningitis and reveal a critical role for autophagy in antiviral defense in humans. Science Immunology, 5(54), Article eabc2691. https://doi.org/10.1126/sciimmunol.abc2691
Villar, I., Rubio, M. C., Calvo-Begueria, L., Pérez-Rontomé, C., Larrainzar, E., Wilson, M. T., Sandal, N., Mur, L. A., Wang, L., Reeder, B., Duanmu, D., Uchiumi, T., Stougaard, J. & Becana, M. (2021). Three classes of hemoglobins are required for optimal vegetative and reproductive growth of Lotus japonicus: genetic and biochemical characterization of LjGlb2-1. Journal of Experimental Botany, 72(22), 7778–7791. https://doi.org/10.1093/jxb/erab376
Nakashima, K. K., van Haren, M. H. I., André, A. A. M., Robu, I. & Spruijt, E. (2021). Active coacervate droplets are protocells that grow and resist Ostwald ripening. Nature Communications, 12(1), 3819. Article 3819. https://doi.org/10.1038/s41467-021-24111-x
Lindskrog, S. V., Prip, F., Lamy, P., Taber, A., Groeneveld, C. S., Birkenkamp-Demtröder, K., Jensen, J. B., Strandgaard, T., Nordentoft, I., Christensen, E., Sokac, M., Birkbak, N. J., Maretty, L., Hermann, G. G., Petersen, A. C., Weyerer, V., Grimm, M. O., Horstmann, M., Sjödahl, G. ... Dyrskjøt, L. (2021). An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer. Nature Communications, 12(1), Article 2301. https://doi.org/10.1038/s41467-021-22465-w
Mühleip, A., Kock Flygaard, R., Ovciarikova, J., Lacombe, A., Fernandes, P., Sheiner, L. & Amunts, A. (2021). ATP synthase hexamer assemblies shape cristae of Toxoplasma mitochondria. Nature Communications, 12(1), Article 120. https://doi.org/10.1038/s41467-020-20381-z
Demontis, D., Walters, R. K., Rajagopal, V. M., Waldman, I. D., Grove, J., Als, T. D., Dalsgaard, S., Ribasés, M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Werge, T., Nordentoft, M., Mors, O., Mortensen, P. B., ADHD Working Group of the Psychiatric Genomics Consortium (PGC), Cormand, B., Hougaard, D. M., Neale, B. M., Franke, B. ... Børglum, A. D. (2021). Author Correction: Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder (Nature communications (2021) 12 1 (576)). Nature Communications, 12, Article 1166. https://doi.org/10.1038/s41467-021-21566-w
Silberberg, J. M., Corey, R. A., Hielkema, L., Stock, C., Stansfeld, P. J., Paulino, C. & Hänelt, I. (2021). Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC. Nature Communications, 12(1), Article 5098. https://doi.org/10.1038/s41467-021-25242-x

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Lisbeth Heilesen