Department of Molecular Biology and Genetics

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Latest peer-reviewed publications at MBG

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Larsen, K. E., Steffensen, J. F., Majgren, B. F. & Jørgensen, H. (2021). Somniosus microcephalus Nei-like DNA glycosylase 1 (NEIL1) mRNA, partial cds. GenBank Accession No. MZ055367. Dataset, NCBI. PubMed. https://www.ncbi.nlm.nih.gov/nuccore/MZ055367
Larsen, K. E., Chana Munoz, A., Panitz, F., Majgren, B. F. & Jørgensen, H. (2021). Squalus acanthias Nei-like DNA glycosylase 1 (NEIL1) mRNA, partial cds. GenBank Accession No. MZ055368.. Dataset, NCBI. PubMed. https://www.ncbi.nlm.nih.gov/nuccore/2085593662
Bange, G., Brodersen, D. E., Liuzzi, A. & Steinchen, W. (2021). Two P or Not Two P: Understanding Regulation by the Bacterial Second Messengers (p)ppGpp. Annual Review of Microbiology, 75, 383-406. https://doi.org/10.1146/annurev-micro-042621-122343
Harwood, S. L., Nielsen, N. S., Pedersen, H., Kjøge, K., Nielsen, P. K., Andersen, G. R. & Enghild, J. J. (2020). Substituting the Thiol Ester of Human A2M or C3 with a Disulfide Produces Native Proteins with Altered Proteolysis-Induced Conformational Changes. Biochemistry, 59(51), 4799–4809. https://doi.org/10.1021/acs.biochem.0c00803
Buggiotti, L., Cheng, Z., Wathes, D. C., GplusE Consortium & Ingvartsen, K. L. (2020). Mining the unmapped reads in bovine RNA-Seq data reveals the prevalence of bovine herpes virus-6 in European dairy cows and the associated changes in their phenotype and leucocyte transcriptome. Viruses, 12(12), Article 1451. https://doi.org/10.3390/v12121451
Harwood, S. L., Nielsen, N. S., Jensen, K. T., Nielsen, P. K., Thøgersen, I. B. & Enghild, J. J. (2020). α2-macroglobulin-like protein 1 can conjugate and inhibit proteases through their hydroxyl groups, because of an enhanced reactivity of its thiol ester. Journal of Biological Chemistry, 295(49), 16732-16742. https://doi.org/10.1074/jbc.RA120.015694
Yang, A., Shao, T. J., Bofill-De Ros, X., Lian, C., Villanueva, P., Dai, L. & Gu, S. (2020). AGO-bound mature miRNAs are oligouridylated by TUTs and subsequently degraded by DIS3L2. Nature Communications, 11(1), Article 2765. https://doi.org/10.1038/s41467-020-16533-w
Just, J., Yan, Y., Farup, J., Sieljacks, P., Sloth, M., Venø, M., Gu, T., de Paoli, F. V., Nyengaard, J. R., Bæk, R., Jørgensen, M. M., Kjems, J., Vissing, K. & Drasbek, K. R. (2020). Blood flow-restricted resistance exercise alters the surface profile, miRNA cargo and functional impact of circulating extracellular vesicles. Scientific Reports, 10(1), Article 5835. https://doi.org/10.1038/s41598-020-62456-3
Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., PCAWG Drivers and Functional Interpretation Group, Johnson, R. & PCAWG Consortium (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications Biology, 3(1), Article 56. https://doi.org/10.1038/s42003-019-0741-7
Yang, C., Aslan, H., Zhang, P., Zhu, S., Xiao, Y., Chen, L., Khan, N., Boesen, T., Wang, Y., Liu, Y., Wang, L., Sun, Y., Feng, Y., Besenbacher, F., Zhao, F. & Yu, M. (2020). Carbon dots-fed Shewanella oneidensis MR-1 for bioelectricity enhancement. Nature Communications, 11(1), Article 1379. https://doi.org/10.1038/s41467-020-14866-0
van der Weijden, V. A. & Ulbrich, S. E. (2020). Embryonic diapause in roe deer: A model to unravel embryo-maternal communication during pre-implantation development in wildlife and livestock species. Theriogenology, 158, 105–111. https://doi.org/10.1016/j.theriogenology.2020.06.042
Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., Zhang, Z., Brazma, A., PCAWG Transcriptome Working Group, PCAWG Structural Variation Working Group, Creighton, C. J. & PCAWG Consortium (2020). High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nature Communications, 11(1), Article 736. https://doi.org/10.1038/s41467-019-13885-w
PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium (2020). Inferring structural variant cancer cell fraction. Nature Communications, 11(1), Article 730. https://doi.org/10.1038/s41467-020-14351-8
Privé, F., Arbel, J. & Vilhjálmsson, B. J. (2020). LDpred2: better, faster, stronger. Bioinformatics, 36(22-23), 5424-5431. https://doi.org/10.1093/bioinformatics/btaa1029
Rabaglino, M. B. & Kadarmideen, H. N. (2020). Machine learning approach to integrated endometrial transcriptomic datasets reveals biomarkers predicting uterine receptivity in cattle at seven days after estrous. Scientific Reports, 10(1), Article 16981. https://doi.org/10.1038/s41598-020-72988-3
Mohammad-Beigi, H., Hayashi, Y., Zeuthen, C. M., Eskandari, H., Scavenius, C., Juul-Madsen, K., Vorup-Jensen, T., Enghild, J. J. & Sutherland, D. S. (2020). Mapping and identification of soft corona proteins at nanoparticles and their impact on cellular association. Nature Communications, 11(1), Article 4535. https://doi.org/10.1038/s41467-020-18237-7
Carmelo, V. A. O., Banerjee, P., da Silva Diniz, W. J. & Kadarmideen, H. N. (2020). Metabolomic networks and pathways associated with feed efficiency and related-traits in Duroc and Landrace pigs. Scientific Reports, 10(1), Article 255. https://doi.org/10.1038/s41598-019-57182-4
Fulgenzi, G., Hong, Z., Tomassoni-Ardori, F., Barella, L. F., Becker, J., Barrick, C., Swing, D., Yanpallewar, S., Croix, B. S., Wess, J., Gavrilova, O. & Tessarollo, L. (2020). Novel metabolic role for BDNF in pancreatic β-cell insulin secretion. Nature Communications, 11(1), 1950. Article 1950. https://doi.org/10.1038/s41467-020-15833-5
Østergaard, S. D., Trabjerg, B. B., Als, T. D., Albiñana, C., Privé, F., Vilhjálmsson, B. J., Bækvad-Hansen, M., Bybjerg-Grauholm, J., Hougaard, D. M., Nordentoft, M., Werge, T., Demontis, D., Mortensen, P. B., Børglum, A. D., Mors, O. & Agerbo, E. (2020). Polygenic risk score, psychosocial environment and the risk of attention-deficit/hyperactivity disorder. Translational Psychiatry, 10(1), Article 335. https://doi.org/10.1038/s41398-020-01019-6
Godskesen, L. E., Lassen, T. R., Jespersen, N. R., Siersbæk, M., Yan, Y., Nielsen, M. M., Tjønnfjord, S. K., Grøntved, L., Madsen, G., Kjems, J., Bøtker, H. E., Schmidt, M. R., Krag, A. & Kjeldsen, J. (2020). Remote ischemic conditioning in active ulcerative colitis: An explorative randomized clinical trial. Scientific Reports, 10(1), Article 9537. https://doi.org/10.1038/s41598-020-65692-9
Thoma, J., Abuillan, W., Furikado, I., Habe, T., Yamamoto, A., Gierlich, S., Kaufmann, S., Brandenburg, K., Gutsmann, T., Konovalov, O., Inoue, S. & Tanaka, M. (2020). Specific localisation of ions in bacterial membranes unravels physical mechanism of effective bacteria killing by sanitiser. Scientific Reports, 10(1), 12302. Article 12302. https://doi.org/10.1038/s41598-020-69064-1
Andrzejczak, O. A., Sørensen, C. K., Wang, W.-Q., Kovalchuk, S., Hagensen, C. E., Jensen, O. N., Carciofi, M., Hovmøller, M. S., Rogowska-Wrzesinska, A., Møller, I. M. & Hebelstrup, K. (2020). The effect of phytoglobin overexpresseion on the plant proteome during nonhost response of barley (Hordeum vulgare) to wheat powdery mildew (Blumeria graminis f. sp. tritici). Scientific Reports, 10(1), Article 9192. https://doi.org/10.1038/s41598-020-65907-z
Gotfryd, K., Boesen, T., Mortensen, J. S., Khelashvili, G., Quick, M., Terry, D. S., Missel, J. W., LeVine, M. V., Gourdon, P., Blanchard, S. C., Javitch, J. A., Weinstein, H., Loland, C. J., Nissen, P. & Gether, U. (2020). X-ray structure of LeuT in an inward-facing occluded conformation reveals mechanism of substrate release. Nature Communications, 11(1), Article 1005. https://doi.org/10.1038/s41467-020-14735-w
Cai, H., Holleufer, A., Simonsen, B., Schneider, J., Lemoine, A., Gad, H. H., Huang, J., Huang, J., Chen, D., Peng, T., Marques, J. T., Hartmann, R., Martins, N. E. & Imler, J. L. (2020). 2'3'-cGAMP triggers a STING- and NF-κB-dependent broad antiviral response in Drosophila. Science Signaling, 13(660), Article eabc4537. https://doi.org/10.1126/scisignal.abc4537
Das Mahapatra, K., Pasquali, L., Søndergaard, J. N., Lapins, J., Nemeth, I. B., Baltás, E., Kemény, L., Homey, B., Moldovan, L. I., Kjems, J., Kutter, C., Sonkoly, E., Kristensen, L. S. & Pivarcsi, A. (2020). A comprehensive analysis of coding and non-coding transcriptomic changes in cutaneous squamous cell carcinoma. Scientific Reports, 10, Article 3637. https://doi.org/10.1038/s41598-020-59660-6
Hajipour, M. J., Mohammad-Beigi, H., Nabipour, I., Mahmoudi, N., Azhdarzadeh, M., Derakhshankhah, H., El Dawud, D., Mohammadinejad, R. & Otzen, D. (2020). Amyloid fibril inhibition, acceleration, or fragmentation: Are nano-based approaches advance in the right direction? Nano Today, 35(December), Article 100983. https://doi.org/10.1016/j.nantod.2020.100983
Nordeen, S. A., Andersen, K. R., Knockenhauer, K. E., Ingram, J. R., Ploegh, H. L. & Schwartz, T. U. (2020). A nanobody suite for yeast scaffold nucleoporins provides details of the nuclear pore complex structure. Nature Communications, 11(1), Article 6179. https://doi.org/10.1038/s41467-020-19884-6
Pedersen, H. S., Mazzoni, G., Pihl, M., Kadarmideen, H., Hyttel, P. & Callesen, H. (2020). Bovine in-vitro produced embryos: development of embryo proper and associated membranes from day 26 to 47 of gestation. Reproductive Biology, 20(4), 595-599. https://doi.org/10.1016/j.repbio.2020.10.001
Schytte, G. N., Christensen, B., Bregenov, I., Kjøge, K., Scavenius, C., Petersen, S. V., Enghild, J. J. & Sørensen, E. S. (2020). FAM20C phosphorylation of the RGDSVVYGLR motif in osteopontin inhibits interaction with the αvβ3 integrin. Journal of Cellular Biochemistry, 121(12), 4809-4818. https://doi.org/10.1002/jcb.29708
Lee, Y. L., Takada, H., Moreira, G. C. M., Karim, L., GplusE Consortium, Bosse, M., Bouwman, A., Mullaart, E., Coppieters, W., Georges, M., Druet, T. & Charlier, C. (2020). Fine resolution CNV catalogue from deeply sequenced cattle genomes. In Book of Abstracts of the 71st Annual Meeting of the European Federation of Animal Science (Vol. 26, pp. 188). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-900-8
Thomsen, P. T., Capion, N. & Foldager, L. (2020). Higher odds of abortion in dairy cows hoof trimmed late in gestation. Research in Veterinary Science, 133, 1-3. https://doi.org/10.1016/j.rvsc.2020.08.016
Omer, M., Andersen, V. L., Nielsen, J. S., Wengel, J. & Kjems, J. (2020). Improved Cancer Targeting by Multimerizing Aptamers on Nanoscaffolds. Molecular Therapy - Nucleic Acids, 22, 994-1003. https://doi.org/10.1016/j.omtn.2020.10.013
Lo, IJ., Hill, J., Vilhjálmsson, B. J. & Kjems, J. (2020). Linking the association between circRNAs and Alzheimer's disease progression by multi-tissue circular RNA characterization. RNA Biology, 17(12), 1789-1797. https://doi.org/10.1080/15476286.2020.1783487
Higashijima, Y., Nagai, N., Yamamoto, M., Kitazawa, T., Kawamura, Y. K., Taguchi, A., Nakada, N., Nangaku, M., Furukawa, T., Aburatani, H., Kurihara, H., Wada, Y. & Kanki, Y. (2020). Lysine demethylase 7a regulates murine anterior-posterior development by modulating the transcription of Hox gene cluster. Communications Biology, 3(1), 725. Article 725. https://doi.org/10.1038/s42003-020-01456-5
Dalskov, L., Møhlenberg, M., Thyrsted, J., Blay-Cadanet, J., Poulsen, E. T., Folkersen, B. H., Skaarup, S. H., Olagnier, D., Reinert, L., Enghild, J. J., Hoffmann, H. J., Holm, C. K. & Hartmann, R. (2020). SARS-CoV-2 evades immune detection in alveolar macrophages. EMBO Reports, 21(12), Article e51252. https://doi.org/10.15252/embr.202051252
Favre-Bulle, I. A., Taylor, M. A., Marquez-Legorreta, E., Vanwalleghem, G., Poulsen, R. E., Rubinsztein-Dunlop, H. & Scott, E. K. (2020). Sound generation in zebrafish with Bio-Opto-Acoustics. Nature Communications, 11(1), Article 6120. https://doi.org/10.1038/s41467-020-19982-5
Kristensen, L. S., Ebbesen, K. K., Sokol, M., Jakobsen, T., Korsgaard, U., Eriksen, A. C., Hansen, T. B., Kjems, J. & Hager, H. (2020). Spatial expression analyses of the putative oncogene ciRS-7 in cancer reshape the microRNA sponge theory. Nature Communications, 11, Article 4551. https://doi.org/10.1038/s41467-020-18355-2
Manav, M. C., Van, L. B., Lin, J., Fuglsang, A., Peng, X. & Brodersen, D. E. (2020). Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein. Nature Communications, 11(1), Article 5993. https://doi.org/10.1038/s41467-020-19847-x
Bailey, S., Sroga, G. E., Hoac, B., Katsamenis, O. L., Wang, Z., Bouropoulos, N., McKee, M. D., Sørensen, E. S., Thurner, P. J. & Vashishth, D. (2020). The role of extracellular matrix phosphorylation on energy dissipation in bone. eLife, 9, 1-19. Article e58184. https://doi.org/10.7554/eLife.58184
Okholm, T. L. H., Sathe, S., Park, S. S., Kamstrup, A. B., Rasmussen, A. M., Shankar, A., Chua, Z. M., Fristrup, N., Nielsen, M. M., Vang, S., Dyrskjøt, L., Aigner, S., Damgaard, C. K., Yeo, G. W. & Pedersen, J. S. (2020). Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression. Genome Medicine, 12(112), Article 112. https://doi.org/10.1186/s13073-020-00812-8
Árnadóttir, S. S., Mattesen, T. B., Vang, S., Madsen, M. R., Madsen, A. H., Birkbak, N. J., Bramsen, J. B. & Andersen, C. L. (2020). Transcriptomic and proteomic intra-tumor heterogeneity of colorectal cancer varies depending on tumor location within the colorectum. PLoS One, 15(12), Article e0241148. https://doi.org/10.1371/journal.pone.0241148
Martins, P. M., Navarro, S., Silva, A., Pinto, M. F., Sárkány, Z., Figueiredo, F., Pereira, P. J. B., Pinheiro, F., Bednarikova, Z., Burdukiewicz, M., Galzitskaya, O. V., Gazova, Z., Gomes, C. M., Pastore, A., Serpell, L. C., Skrabana, R., Smirnovas, V., Ziaunys, M., Otzen, D. E. ... Macedo-Ribeiro, S. (2020). MIRRAGGE - Minimum Information Required for Reproducible AGGregation Experiments. Frontiers in Molecular Neuroscience, 13, Article 582488. https://doi.org/10.3389/fnmol.2020.582488
Holt-Danborg, L., Skovbjerg, S., Goderum, K. W., Nonboe, A. W., Stankevic, E., Frost, Á. K., Vitved, L., Jensen, J. K. & Vogel, L. K. (2020). Insights into the regulation of the matriptase-prostasin proteolytic system. Biochemical Journal, 477(22), 4349-4365. https://doi.org/10.1042/BCJ20200630
Moesgaard, L., Petersen, D., Szomek, M., Reinholdt, P., Winkler, M., Frain, K. M., Müller, P., Pedersen, B. P., Kongsted, J. & Wüstner, D. (2020). Mechanistic Insight into Lipid Binding to Yeast Niemann Pick Type C2 Protein. Biochemistry, 59(45), 4407–4420. https://doi.org/10.1021/acs.biochem.0c00574
Wong, E. S., Zheng, D., Tan, S. Z., Bower, N. I., Garside, V., Vanwalleghem, G., Gaiti, F., Scott, E., Hogan, B. M., Kikuchi, K., McGlinn, E., Francois, M. & Degnan, B. M. (2020). Deep conservation of the enhancer regulatory code in animals. Science, 370(6517), Article eaax8137. https://doi.org/10.1126/science.aax8137
Engemann, K., Pedersen, C. B., Agerbo, E., Arge, L., Børglum, A. D., Erikstrup, C., Hertel, O., Hougaard, D. M., McGrath, J. J., Mors, O., Mortensen, P. B., Nordentoft, M., Sabel, C. E., Sigsgaard, T., Tsirogiannis, C., Vilhjálmsson, B. J., Werge, T., Svenning, J.-C. & Horsdal, H. T. (2020). Association Between Childhood Green Space, Genetic Liability, and the Incidence of Schizophrenia. Schizophrenia Bulletin, 46(6), 1629-1637. https://doi.org/10.1093/schbul/sbaa058
Dai, L., Hallmark, L., Bofill De Ros, X., Crouch, H., Chen, S., Shi, T., Yang, A., Lian, C., Zhao, Y., Tran, B. & Gu, S. (2020). Novel, abundant Drosha isoforms are deficient in miRNA processing in cancer cells. RNA Biology, 17(11), 1603-1612. https://doi.org/10.1080/15476286.2020.1813439
Stoll, L., Rodríguez-Trejo, A., Guay, C., Brozzi, F., Bayazit, M. B., Gattesco, S., Menoud, V., Sobel, J., Marques, A. C., Venø, M. T., Esguerra, J. L. S., Barghouth, M., Suleiman, M., Marselli, L., Kjems, J., Eliasson, L., Renström, E., Bouzakri, K., Pinget, M. ... Regazzi, R. (2020). A circular RNA generated from an intron of the insulin gene controls insulin secretion. Nature Communications, 11, Article 5611. https://doi.org/10.1038/s41467-020-19381-w
Zhang, B., Nandakumar, R., Reinert, L. S., Huang, J., Laustsen, A., Gao, Z., Sun, C., Jensen, S. B., Troldborg, A., Assil, S., Berthelsen, M. F., Scavenius, C., Zhang, Y., Windross, S. J., Olagnier, D., Prabakaran, T., Bodda, C., Narita, R., Cai, Y. ... Paludan, S. R. (2020). Author Correction: STEEP mediates STING ER exit and activation of signaling (Nature Immunology, (2020), 21, 8, (868-879), 10.1038/s41590-020-0730-5). Nature Immunology, 21(11), 1468-1469. https://doi.org/10.1038/s41590-020-0803-5
Dalskov, L., Narita, R., Andersen, L. L., Jensen, N., Assil, S., Kristensen, K. H., Mikkelsen, J. G., Fujita, T., Mogensen, T. H., Paludan, S. R. & Hartmann, R. (2020). Characterization of distinct molecular interactions responsible for IRF3 and IRF7 phosphorylation and subsequent dimerization. Nucleic Acids Research, 48(20), 11421-11433. https://doi.org/10.1093/nar/gkaa873

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