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Latest peer-reviewed publications at MBG

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Displaying results 4251 to 136 out of 136

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Zhukov, V., Radutoiu, S., Madsen, L. H., Rychagova, T., Ovchinnikova, E., Borisov, A., Tikhonovich, I. & Stougaard, J. (2008). The pea Sym37 receptor kinase gene controls infection-thread initiation and nodule development. Molecular plant-microbe interactions, 21(12), 1600-8. https://doi.org/10.1094/MPMI-21-12-1600

Baptista, R. P., Pedersen, S. H., Cabrita, G. J. M., Otzen, D., Cabral, J. M. & Melo, E. P. (2008). Thermodynamics and mechanism of cutinase stabilization by trehalose. Biopolymers, 89, 538-547.

Kammler, S., Lykke-Andersen, S. & Jensen, T. H. (2008). The RNA exosome componenty hRrp6 is a target for 5-fluorouracil in human cells. Molecular Cancer Research, 6(6), 990-995.

Stevnsner, T. V., Muftuoglu, M., Aamann, M. A. D. & Bohr, V. (2008). The role of Cockayne Syndrome group B (CSB) protein in base excision repair and aging. Mechanisms of Ageing and Development, 129(7-8), 441-448.

Malagon, F. & Jensen, T. H. (2008). The T-body: a new cytoplasmic RNA granule in Saccharomyces cerevisiae. Molecular and Cellular Biology.

Karolchik, D., Kuhn, R. M., Baertsch, R., Barber, G. P., Clawson, H., Diekhans, M., Giardine, B., Harte, R. A., Hinrichs, A. S., Hsu, F., Kober, K. M., Miller, W., Pedersen, J. S., Pohl, A., Raney, B. J., Rhead, B., Rosenbloom, K. R., Smith, K. E., Stanke, M. ... Pedersen, J. S. (2008). The UCSC Genome Browser Database: 2008 update. Nucleic Acids Research, 36(Database issue), D773-9. https://doi.org/10.1093/nar/gkm966

Mansilla, F., Dominguez, C. A. G., Yeadon, J. E., Corydon, T. J., Burden, S. J. & Knudsen, C. R. (2008). Translation elongation factor eEF1A binds to a novel myosin binding protein-C-like protein. Molecular and Cellular Biology, 105(3), 847-858.

Leppälä, J., Bechsgaard, J. S., Schierup, M. H. & Savolainen, O. (2008). Transmission ratio distortion in Arabidopsis lyrata: effects of population divergence and the S-locus. Heredity, 100, 71-78.

Fukai, E., Dobrowolska, A. D., Madsen, L. H., Madsen, E. B., Umehara, Y., Kouchi, H., Hirochika, H. & Stougaard, J. (2008). Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus. Plant Molecular Biology, 68(6), 653-63. https://doi.org/10.1007/s11103-008-9397-2

Rasmusson, A. G., Handa, H. & Møller, I. M. (Eds.) (2008). Unique aspects of plant mitochondria. Mitochondrion, 8(1), 1-4.

Constantin, G. D., Grønlund, M., Johansen, I. E., Stougaard, J. & Lund, O. S. (2008). Virus-Induced Gene Silencing (VIGS) as a Reverse Genetic Tool to Study Development of Symbiotic Root Nodules. Molecular plant-microbe interactions, 21(6), 720-727. https://doi.org/10.1094/MPMI-21-6-0720

Ehlers, B. & Schierup, M. H. (2008). When gametophytic self-incompatibility meets gynodioecy. Genetics Research, 90(1), 27-35. https://doi.org/10.1017/S0016672307009007

Bukowy, Z. K., A. Harrigan, J., A. Ramsden, D., Tudek, B., Bohr, V. & Stevnsner, T. V. (2008). WRN Exonuclease activity is blocked by specific oxidatively induced base lesions positioned in either DNA strand. Nucleic Acids Research, 1-13.

Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, R., Munch, K., Brand, T., Gilbert, M. T. P., Zuber, M. T., Bunce, M., Rønn, R., Gilichinsky, D., Froese, D. & Willerslev, E. (2007). Ancient bacteria show evidence of DNA repair (Proceedings of the National Academy of Sciences of the United States of America (2007) 104, 36 (14401-14405) (DOI: 10.1073/pnas.0706787104). Proceedings of the National Academy of Sciences (PNAS), 104(51). https://doi.org/10.1073/pnas.0710637105

Petersen, S. V., Valnickova, Z., Oury, T. D., Crapo, J. D., Chr, N. & Enghild, J. J. (2007). The subunit composition of human extracellular superoxide dismutase (EC-SOD) regulate enzymatic activity. BMC Biochemistry, 8, Article 19. https://doi.org/10.1186/1471-2091-8-19

Moldt, B., Yant, S. R., Andersen, P. R., Kay, M. A. & Mikkelsen, J. G. (2007). Cis-acting gene regulatory activities in the terminal regions of sleeping beauty DNA transposon-based vectors. Human Gene Therapy, 18(12), 1193-204. https://doi.org/10.1089/hum.2007.099

Laursen, L. S. & Ffrench-Constant, C. (2007). Adhesion molecules in the regulation of CNS myelination. Neuron Glia Biology, 3(4), 367-75. https://doi.org/10.1017/S1740925X08000161

Arendt, M., Rosenberg, R., Foldager, L., Sher, L. & Munk-Jørgensen, P. (2007). Withdrawal symptoms do not predict relapse among subjects treated for cannabis dependence. American Journal on Addictions, 16(6), 461-467.

Nielsen, J. S., Bøggild, A., Andersen, C. B. F., Nielsen, G., Boysen, A., Brodersen, D. E. & Valentin-Hansen, P. (2007). An Hfq-like protein in archaea: crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii. RNA, 13(12), 2213-2223. https://doi.org/10.1261/rna.689007

Madsen, B. E., Villesen, P. & Wiuf, C. (2007). A periodic pattern of SNPs in the human genome. Genome Research, 17(10), 1414-9. https://doi.org/10.1101/gr.6223207

De Haas, Y., Janss, L. L. G. & Kadarmideen, H. N. (2007). Genetic correlations between body condition scores and fertility in dairy cattle using bivariate random regression models. Journal of Animal Breeding and Genetics, 124(5), 277-285. https://doi.org/10.1111/j.1439-0388.2007.00675.x

Song, Y. J. C., Lundvig, D. M. S., Huang, Y., Wei, P. G., Blumbergs, P. C., Højrup, P., Otzen, D., Halliday, G. M. & Jensen, P. H. (2007). p25α relocalizes in oligodendroglia from myelin to cytoplasmic inclusions in multiple system atrophy. American Journal of Pathology, 171(4), 1291-1303. https://doi.org/10.2353/ajpath.2007.070201

Fälth, M., Savitski, M. M., Nielsen, M. L., Kjeldsen, F., Andren, P. E. & Zubarev, R. A. (2007). SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides. Journal of proteome Research, 6(10), 4063-4067. https://doi.org/10.1021/pr070345h

Kjærgaard, M., Gårdsvoll, H., Hirschberg, D., Nielbo, S., Mayasundari, A., Peterson, C. B., Jansson, A., Jørgensen, T. J. D., Poulsen, F. M. & Ploug, M. (2007). Solution structure of recombinant somatomedin B domain from vitronectin produced in Pichia pastoris. Protein Science, 16(9), 1934-45. https://doi.org/10.1110/ps.072949607

Madsen, L. B., Thomsen, B., Sølvsten, C. A. E., Bendixen, C., Fredholm, M., Jørgensen, A. L. & Nielsen, A. L. (2007). Identification of the porcine homologous of human disease causing trinucleotide repeat sequences. Neurogenetics, 8(3), 207-218. https://doi.org/10.1007/s10048-007-0088-y

Zhou, Z., Hamming, O. J., Ank, N., Paludan, S. R., Nielsen, A. L., Hartmann, R. & Nielsen, A. L. (2007). Type III interferon (IFN) induces a type I IFN-like response in a restricted subset of cells through signaling pathways involving both the Jak-STAT pathway and the mitogen-activated protein kinases. Journal of Virology, 81(14), 7749-7758. https://doi.org/10.1128/JVI.02438-06

Kadarmideen, H. N. & Reverter, A. (2007). Combined genetic, genomic and transcriptomic methods in the analysis of animal traits. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 2, Article 042. https://doi.org/10.1079/PAVSNNR20072042

Savitski, M. M., Kjeldsen, F., Nielsen, M. L. & Zubarev, R. A. (2007). Relative specificities of water and ammonia losses from backbone fragments in collision-activated dissociation. Journal of proteome Research, 6(7), 2669-2673. https://doi.org/10.1021/pr070121z

Arendt, M., Rosenberg, R., Fjorback, L., Brandholdt, J., Foldager, L., Sher, L. & Munk-Jørgensen, P. (2007). Testing the self-medication hypothesis of depression and aggression in cannabis dependent subjects. Psychological Medicine, 37(7), 935-945.

Gendron, C., Kashiwagi, M., Ngee, H. L., Enghild, J. J., Thøgersen, I. B., Hughes, C., Caterson, B. & Nagase, H. (2007). Proteolytic activities of human ADAMTS-5: Comparative studies with ADAMTS-4. Journal of Biological Chemistry, 282(25), 18294-18306. https://doi.org/10.1074/jbc.M701523200

Von Rohr, P., Friberg, M. T. & Kadarmideen, H. N. (2007). Prediction of transcription factor binding sites using genetical genomics methods. Journal of Bioinformatics and Computational Biology, 5(3), 773-793. https://doi.org/10.1142/S0219720007002680

Chillemi, G., Fiorani, P., Bruselles, A., Castelli, S., Campagna, A., Sarra, O., Tesauro, C., Fiorentini, M., Vassallo, O., D'Annessa, I., Santoleri, S. & Desideri, A. (2007). Role of flexibility and long range communication on the function of human topoisomerase I. Italian Journal of Biochemistry, 56(2), 110-114.

Lorentzen, E., Dziembowski, A., Lindner, D., Seraphin, B. & Conti, E. (2007). RNA channelling by the archaeal exosome. EMBO Reports, 8(5), 470-476.

Thangarajh, M., Kisiswa, L., Pirskanen, R. & Hillert, J. (2007). The expression of BAFF-binding receptors is not altered in multiple sclerosis or myasthenia gravis. Scandinavian Journal of Immunology, 65(5), 461-466. https://doi.org/10.1111/j.1365-3083.2007.01921.x

Lerner, M., Corcoran, M., Cepeda, D., Nielsen, M. L., Zubarev, R., Pontén, F., Uhlén, M., Hober, S., Grandér, D. & Sangfelt, O. (2007). The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD. Molecular Biology of the Cell, 18(5), 1670-1682. https://doi.org/10.1091/mbc.E06-03-0248

Taylor, D. J., Nilsson, J., A. Rod, M., Andersen, G. R., Nissen, P. & Frank, J. (2007). Structures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation. EMBO Journal, 26(9), 2421-2431.

Weissman, L., de Souza-Pinto, N. C., Stevnsner, T. & Bohr, V. A. (2007). DNA repair, mitochondria, and neurodegeneration. Neuroscience, 145(4), 1318-1329. https://doi.org/10.1016/j.neuroscience.2006.08.061

Rougemaille, M., Gudipati, R. K., Olesen, J. R., Thomsen, R., Seraphin, B., Libri, D. & Jensen, T. H. (2007). Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO Journal, 26, 2317-2326. https://doi.org/10.1038/sj.emboj.7601669

Haile, J., Holdaway, R., Oliver, K., Bunce, M., Gilbert, M. T. P., Nielsen, R., Munch, K., Ho, S. Y. W., Shapiro, B. & Willerslev, E. (2007). Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor? Molecular Biology and Evolution, 24(4), 982-989. https://doi.org/10.1093/molbev/msm016

Thaysen-Andersen, M., Thøgersen, I. B., Nielsen, H. J., Lademann, U., Brünner, N., Enghild, J. J. & Højrup, P. (2007). Rapid and individual-specific glycoprofiling of the low abundance N-glycosylated protein tissue inhibitor of metalloproteinases-1. Molecular and Cellular Proteomics, 6(4), 638-647. https://doi.org/10.1074/mcp.M600407-MCP200

Savitski, M. M., Nielsen, M. L. & Zubarev, R. A. (2007). Side-chain losses in electron capture dissociation to improve peptide identification. Analytical Chemistry, 79(6), 2296-2302. https://doi.org/10.1021/ac0619332

Kadarmideen, H. N. & Janss, L. L. G. (2007). Population and systems genetics analyses of cortisol in pigs divergently selected for stress. Physiological Genomics, 29(1), 57-65. https://doi.org/10.1152/physiolgenomics.00144.2006

Valnickova, Z., Petersen, S. V., Nielsen, S. B., Otzen, D. E. & Enghild, J. J. (2007). Heparin binding induces a conformational change in pigment epithelium-derived factor. Journal of Biological Chemistry, 282(9), 6661-6667. https://doi.org/10.1074/jbc.M610471200

Nielsen, K. B., Sørensen, S., Cartegni, L., Corydon, T. J., Doktor, T. K., Schroeder, L. D., Reinert, L. S., Elpeleg, O., Krainer, A. R., Gregersen, N., Kjems, J. & Andresen, B. S. (2007). Seemingly neutral polymorphic variants may confer immunity to splicing-inactivating mutations: a synonymous SNP in exon 5 of MCAD protects from deleterious mutations in a flanking exonic splicing enhancer. American Journal of Human Genetics, 80(3), 416-432. https://doi.org/10.1086/511992

Rojek, A. M., Skowronski, M. T., Füchtbauer, E. M., Füchtbauer, A. C., Fenton, R. A., Agre, P., Frøkiær, J. & Nielsen, S. (2007). Defective glycerol metabolism in aquaporin 9 (AQP9) knockout mice. Proceedings of the National Academy of Sciences (PNAS), 104(9), 3609-3614. https://doi.org/10.1073/pnas.0610894104

De Haas, Y., Janss, L. L. G. & Kadarmideen, H. N. (2007). Genetic and phenotypic parameters for conformation and yield traits in three Swiss dairy cattle breeds. Journal of Animal Breeding and Genetics, 124(1), 12-19. https://doi.org/10.1111/j.1439-0388.2007.00630.x

Glerup, S., Kløverpris, S., Laursen, L. S., Dagnaes-Hansen, F., Thiel, S., Conover, C. A. & Oxvig, C. (2007). Cell surface detachment of pregnancy-associated plasma protein-A requires the formation of intermolecular proteinase-inhibitor disulfide bonds and glycosaminoglycan covalently bound to the inhibitor. Journal of Biological Chemistry, 282(3), 1769-1778. https://doi.org/10.1074/jbc.M608454200

Dziembowski, A., Lorentzen, E., Conti, E. & Seraphin, B. (2007). A single subunit, Dis3, is essentially responsible for yeast exosome core activity. Nat. Struct. Mol. Biol., 14(1), 15-22.

Madsen, L. B., Thomsen, B., Larsen, K. E., Bendixen, C., Holm, I. E., Fredholm, M., Jørgensen, A. L., Nielsen, A. L. & Nielsen, A. L. (2007). Molecular characterization and temporal expression profiling of presenilins in the developing porcine brain. BMC Neuroscience, 8(72), 1-11. https://doi.org/10.1186/1471-2202-8-72

Karring, H., Møller-Pedersen, T., Enghild, J. J. & Klintworth, G. K. (2007). Ocular proteins and proteomics. In Garner and Klintworth's Pathobiology of Ocular Disease Part B, Third Edition (pp. 798-834). CRC Press.

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