Peer-reviewed articles

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Latest peer-reviewed publications at MBG

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Displaying results 3701 to 95 out of 95

Peer-reviewed publications at MBG - all years

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Lie, M. A., Thomsen, R., Pedersen, C. N. S., Schiøtt, B. & Christensen, M. H. (2011). Molecular Docking with Ligand Attached Water Molecules. Journal of Chemical Information and Modeling, 51(4), 909-917. https://doi.org/10.1021/ci100510m

Rafnar, T., Gudbjartsson, D. F., Sulem, P., Jonasdottir, A., Sigurdsson, A., Jonasdottir, A., Besenbacher, S., Lundin, P., Stacey, S. N., Gudmundsson, J., Magnusson, O. T., le Roux, L., Orlygsdottir, G., Helgadottir, H. T., Johannsdottir, H., Gylfason, A., Tryggvadottir, L., Jonasson, J. G., de Juan, A. ... Stefansson, K. (2011). Mutations in BRIP1 confer high risk of ovarian cancer. Nature Genetics, 43(11), 1104-7. https://doi.org/10.1038/ng.955

Parker, B. J., Moltke, I., Roth, A. A. E., Washietl, S., Wen, J., Kellis, M., Breaker, R. & Pedersen, J. S. (2011). New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes. Genome Research, 21(11), 1929-43. https://doi.org/10.1101/gr.112516.110

Vestergaard, A. L., Thorup, K., Knudsen, U. B., Munk, T., Rosbach, H., Poulsen, J. B., Guldberg, P. & Martensen, P. M. (2011). Oncogenic events associated with endometrial and ovarian cancers are rare in endometriosis. Molecular Human Reproduction, 17(4), 243-254. https://doi.org/10.1093/molehr/gar049

Roy, A., D'Annessa, I., Nielsen, C. J. F., Tordrup, D. P., Laursen, R. R., Andersen, F. F., Desideri, A. & Knudsen, B. R. (2011). Peptide Inhibition of Topoisomerase IB from Plasmodium falciparum. Molecular Biology International, 854626. https://doi.org/10.4061/2011/854626

Brinkmann, C. R., Thiel, S., Larsen, M. K., Petersen, T. E., Jensenius, J. C. & Heegaard, C. W. (2011). Preparation and comparison of cytotoxic complexes formed between oleic acid and either bovine or human (alpha)-lactalbumin. Journal of Dairy Science, 94(5), 2159-2170.

Brinkmann, C. R., Thiel, S., Larsen, M. K., Petersen, T. E., Jensenius, J. C. & Heegaard, C. W. (2011). Preparation and comparison of cytotoxic complexes formed between oleic acid and either bovine or human α-lactalbumin. Indian Journal of Dairy Science, 94(5), 2159-2170. https://doi.org/10.3168/jds.2010-3622

Otzen, D. (2011). Protein-surfactant interactions a tale of many states. BBA General Subjects, 1814(5), 562-91. https://doi.org/10.1016/j.bbapap.2011.03.003

Simonsen, M. & Pedersen, C. N. S. (2011). Rapid Computation of Distance Estimators from Nucleotide and Amino Acid Alignments. In Proceedings of the 26th Annual ACM Symposium on Applied Computing Association for Computing Machinery.

Dupont, D. M., Madsen, J. B., Bøtkjær, K. A., Tavitian, B., Duconge, F., Kjems, J. & Andreasen, P. (2011). RNA aptamers to the cancer-associated proteins UPA and PAI-1 with therapeutic potential. Nucleic Acid Therapeutics, 21(5).

Desbrosses, G. J. & Stougaard, J. (2011). Root nodulation: a paradigm for how plant-microbe symbiosis influences host developmental pathways. Cell Host & Microbe, 10(4), 348-58. https://doi.org/10.1016/j.chom.2011.09.005

Basaiawmoit, R. V., Oliveira, C. L. P., Runager, K., Sørensen, C. S., Behrens, M. A., Jonsson, B.-H., Kristensen, T., Klintworth, G. K., Enghild, J. J., Pedersen, J. S. & Otzen, D. E. (2011). SAXS models of TGFBIp reveal a trimeric structure and show that the overall shape is not affected by the Arg124His mutation. Journal of Molecular Biology, 408(3), 503-513. https://doi.org/10.1016/j.jmb.2011.02.052

Weber, M., Schneider, D., Prodöhl, A., Dreher, C., Becker, C., Underhaug, J., Svane, A. S. P., Malmendal, A., Nielsen, N. C. & Otzen, D. (2011). SDS-facilitated in vitro formation of a transmembrane B-type cytochrome is mediated by changes in local pH. Journal of Molecular Biology, 407(4), 594-606. https://doi.org/10.1016/j.jmb.2011.02.005

Østergaard, S. D., Dinesen, P. T. & Foldager, L. (2011). Sensitivity x PPV is a recognized test called the clinical utility index (CUI+). The Authors Reply. European Journal of Epidemiology, 26, 252-252. https://doi.org/10.1007/s10654-011-9561-x

Wang, J., Jensen, U. B., Jensen, G. V., Shipovskov, S., Balakrishnan, V. S., Otzen, D., Pedersen, J. S., Besenbacher, F. & Sutherland, D. S. (2011). Soft Interactions at Nanoparticles Alter Protein Function and Conformation in a Size Dependent Manner. Nano Letters, 11(11), 4985-4991. https://doi.org/10.1021/nl202940k

Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K.-P. ... Willerslev, E. (2011). Species-specific responses of Late Quaternary megafauna to climate and humans. Nature, 479(7373), 359-64. https://doi.org/10.1038/nature10574

Nielsen, K. H., Behrens, M. A., He, Y., Oliveira, C. L. P. D., Sottrup-Jensen, L., Hoffmann, S. V., Pedersen, J. S. & Andersen, G. R. (2011). Synergistic activation of eIF4A by eIF4B and eIF4G. Nucleic Acids Research, 39(7), 2678-2689. https://doi.org/10.1093/nar/gkq1206

Malagon, F. & Jensen, T. H. (2011). T-body formation precedes virus-like particle maturation in S. cerevisiae. RNA Biology, 8(2), 184-189. https://doi.org/10.4161/rna.8.2.14822

Jiang, L., Svane, A. S. P., Sørensen, H. P., Jensen, J. K., Hosseini, M., Chen, Z., Weydert, C., Nielsen, J. T., Christensen, A., Yuan, C., Jensen, K. J., Nielsen, N. C., Malmendal, A., Huang, M. & Andreasen, P. (2011). The binding mechanism of a peptidic cyclic serine protease inhibitor. International Journal of Molecular Biology, 412(2), 235-50. https://doi.org/10.1016/j.jmb.2011.07.028

Gislason, T., Pack, A. I., Helgadottir, H. T., Stefansson, K., Besenbacher, S. & Jonsdottir, I. (2011). The CRP and GDNF genes do not contribute to apnea-hypopnea index or risk of obstructive sleep apnea. American Journal of Respiratory and Critical Care Medicine, 184(1), 143-4; author reply 144-5.

Gentry, A. C., Jensen, S. J., Veigaard, C., Knudsen, B. R. & Osheroff, N. (2011). The Geometry of DNA Supercoils Modulates the DNA Cleavage Activity of Human Topoisomerase I. Nucleic Acids Research, 39(3).

Olshansky, S. J., Biggs, S., Achenbaum, W. A., Davison, G., Fried, L., Gutman, G., Kalache, A., Khaw, K.-T., Fernandez, A., Rattan, S., Guimaraes, R. M., Milner, C. & Butler, R. (2011). The global agenda council on the ageing society: policy principles. Global Policy, 2(1), 97-105.

Venø, S. T., Kulikowicz, T., Pestana, C., Stepien, P., Stevnsner, T. V. & Bohr, V. (2011). The Human Suv3 Helicase Interacts with Replication Protein A and Flap Endonuclease 1 in the Nucleus. Biochemical Journal.

Stukenbrock, E. H., Bataillon, T., Dutheil, J. Y., Hansen, T. T., Li, R., Zala, M., McDonald, B. A., Wang, J. & Schierup, M. H. (2011). The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Research, 21, 2157-2166. https://doi.org/10.1101/gr.118851.110

Gjelstrup, L. C., Andersen, S. H., Petersen, S. V., Enghild, J. J., Blom, A. M., Vorup-Jensen, T. & Thiel, S. (2011). The role of higher-order protein structure in supporting binding by heteroclitic monoclonal antibodies: the monoclonal antibody KIM185 to CD18 also binds C4-binding protein. Molecular Immunology, 49(1-2), 38-47. https://doi.org/10.1016/j.molimm.2011.07.018

Vestergaard, A. L., Knudsen, U. B., Munk, T., Rosbach, H. & Martensen, P. M. (2011). Transcriptional expression of type I interferon response genes and stability of housekeeping genes in the human endometrium and endometriosis. Molecular Human Reproduction, 17(4), 243-254. https://doi.org/10.1093/molehr/gaq100

Frederiksen, P., Hammershøj, M., Bakman, M., Andersen, P. N., Andersen, J. B., Qvist, K. B. & Larsen, L. B. (2011). Variations in Coagulation Properties of Cheese Milk from three Danish Dairy Breeds. Dairy Science & Technology, 91, 309-321. https://doi.org/10.1007/s13594-011-0018-5

Patro, B. S., Hougaard, R. F., Bohr, V. & Stevnsner, T. V. (2011). WRN helicase regulates the ATR-CHK1-induced S-phase checkpoint pathway in response to topoisomerase-IDNA covalent complexes. Journal of Cell Science, 124, 3967-3979. https://doi.org/10.1242/jcs.081372

Wierenga, C. J., Müllner, F. E., Rinke, I., Keck, T., Stein, V. & Bonhoeffer, T. (2010). Molecular and electrophysiological characterization of GFP-expressing CA1 interneurons in GAD65-GFP mice. PLoS One, 5(12), Article e15915. https://doi.org/10.1371/journal.pone.0015915

Stukenbrock, E., Jørgensen, F., Zala, M., Hansen, T. T., McDonald, B. A. & Schierup, M. H. (2010). Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genetics, 23(6).

Giehm, L., Lorenzen, N. & Otzen, D. E. (2010). Assays for α-synuclein aggregation. Methods. https://doi.org/10.1016/j.ymeth.2010.12.008

Andersen, C. L., Lamy, P., Thorsen, K., Kjeldsen, E., Wikman, F., Villesen, P., Øster, B., Laurberg, S. & Ørntoft, T. F. (2010). Frequent genomic loss at chr16p13.2 is associated with poor prognosis in colorectal cancer. International Journal of Cancer. https://doi.org/10.1002/ijc.25841

Otzen, D. & Enghild, J. J. (2010). Human phenotypically distinct TGFI corneal dystrophies are linked to the stability of the fourth Fas1 domain of TGFBIp. Journal of Biological Chemistry.

Rahbek, U. L., Nielsen, A. F., Dong, M., You, Y., Chauchereau, A., Oupicky, D., Besenbacher, F., Kjems, J. & Howard, K. A. (2010). Bioresponsive hyperbranched polymers for siRNA and miRNA delivery. Journal of Drug Targeting, 18(10), 812-20. https://doi.org/10.3109/1061186X.2010.527982

Doǧanli, C., Kjærgaard, T., Olsen, A., Oxvig, C., Füchtbauer, E. M. & Lykke-Hartmann, K. (2010). Early developmental expression of mus musculus zinc finger RNA-binding protein compared to orthologs in caenorhabditis elegans and danio rerio and subcellular localization of mus musculus and caenorhabditis elegans zinc finger rna-binding protein in 2-cell mus musculus embryos. DNA and Cell Biology, 29(12), 713-727. https://doi.org/10.1089/dna.2010.1085

Müllner, F. E., Syed, S., Selvin, P. R. & Sigworth, F. J. (2010). Improved hidden Markov models for molecular motors, part 1: basic theory. Biophysical Journal, 99(11), 3684-95. https://doi.org/10.1016/j.bpj.2010.09.067

Syed, S., Müllner, F. E., Selvin, P. R. & Sigworth, F. J. (2010). Improved hidden Markov models for molecular motors, part 2: extensions and application to experimental data. Biophysical Journal, 99(11), 3696-703. https://doi.org/10.1016/j.bpj.2010.09.066

Malet, H., Topf, M., Clare, D. K., Ebert, J., Bonneau, F., Basquin, J., Drazkowska, K., Tomecki, R., Dziembowski, A., Conti, E., Saibil, H. R. & Lorentzen, E. (2010). RNA channelling by the eukaryotic exosome. EMBO Reports, 11(12), 936-942.

Dupont, D. M., Madsen, J. B., Hartmann, R. K., Tavitian, B., Ducongé, F., Kjems, J. & Andreasen, P. A. (2010). Serum-stable RNA aptamers to urokinase-type plasminogen activator blocking receptor binding. RNA, 16(12), 2360-9. https://doi.org/10.1261/rna.2338210

Sørensen, M., Dato, S., Christensen, K., McGue, M., Stevnsner, T. V., Bohr, V. & Christiansen, L. (2010). Replication of an association of variation in the FOXO3A gene with human longevity using both case-control and longitudinal data. Aging Cell, 9(6), 1010-1017. https://doi.org/10.1111/j.1474-9726.2010.00627.x.