Department of Molecular Biology and Genetics

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Latest peer-reviewed publications at MBG

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Kjaer, T. R., Thiel, S. & Andersen, G. R. (2013). Toward a structure-based comprehension of the lectin pathway of complement. Molecular Immunology, 56(3), 222-231. https://doi.org/10.1016/j.molimm.2013.05.220
Tan, C. L., Plotkin, J. L., Venø, M. T., von Schimmelmann, M., Feinberg, P., Mann, S., Handler, A., Kjems, J., Surmeier, D. J., O’Carroll, D., Greengard, P. & Schaefer, A. (2013). MicroRNA-128 governs neuronal excitability and motor behavior in mice. Science, 342(6163), 1254-1258. https://doi.org/10.1126/science.1244193
Andersen, M. Ø., Le, D. Q. S., Chen, M., Nygaard, J. V., Kassem, M., Bünger, C. & Kjems, J. (2013). Spatially Controlled Delivery of siRNAs to Stem Cells in Implants Generated by Multi-Component Additive Manufacturing. Advanced Functional Materials, 23(45), 5599-5607. https://doi.org/10.1002/adfm.201300832
Rattan, S. (2013). Healthy ageing, but what is health? Biogerontology, 14(6), 673-677. https://doi.org/10.1007/s10522-013-9442-7
Osório, C., Chacón, P. J., Kisiswa, L., White, M., Wyatt, S., Rodríguez-Tébar, A. & Davies, A. M. (2013). Growth differentiation factor 5 is a key physiological regulator of dendrite growth during development. Development (Cambridge), 140(23), 4751-4762. https://doi.org/10.1242/dev.101378
Sahana, G., Guldbrandtsen, B., Thomsen, B. & Lund, M. S. (2013). Confirmation and fine-mapping of clinical mastitis and somatic cell score QTL in Nordic Holstein cattle. Animal Genetics, 44(6), 620-626. https://doi.org/10.1111/age.12053
Yatime, L. & Andersen, G. R. (2013). Structural insights into the oligomerization mode of the human Receptor for Advanced Glycation End-products (RAGE). FEBS journal, 280(24), 6556-6568. https://doi.org/10.1111/febs.12556
D'Annessa, I., Tesauro, C., Wang, Z., Arnò, B., Zuccaro, L., Fiorani, P. & Desideri, A. (2013). The human topoisomerase 1B Arg634Ala mutation results in camptothecin resistance and loss of inter-domain motion correlation. BBA General Subjects, 1834(12), 2712-2721. https://doi.org/10.1016/j.bbapap.2013.09.017
Doğanli, C., Oxvig, C. & Lykke-Hartmann, K. (2013). Zebrafish as a novel model to assess Na+/K+-ATPase-related neurological disorders. Neuroscience & Biobehavioral Reviews, 37(10 Part2), 2774–2787. https://doi.org/10.1016/j.neubiorev.2013.09.013
Sand, A., Kristiansen, M., Pedersen, C. N. S. & Mailund, T. (2013). zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm. BMC Bioinformatics , 14(339), 339-348. https://doi.org/10.1186/1471-2105-14-339
Hackenberg, T., Juul, T., Auzina, A., Gwizdz, S., Malolepszy, A., Van Der Kelen, K., Dam, S., Bressendorff, S., Lorentzen, A. M., Roepstorff, P., Lehmann Nielsen, K., Jørgensen, J.-E., Hofius, D., Van Breusegem, F., Petersen, M. & Andersen, S. U. (2013). Catalase and NO CATALASE ACTIVITY1 Promote Autophagy-Dependent Cell Death in Arabidopsis. Plant Cell, 25(11), 4616-4626. https://doi.org/10.1105/tpc.113.117192
Scholey, A. B., Camfield, D. A., Hughes, M. E., Woods, W., K Stough, C. K., White, D. J., Gondalia, S. V. & Frederiksen, P. D. (2013). A randomized controlled trial investigating the neurocognitive effects of Lacprodan® PL-20, a phospholipid-rich milk protein concentrate, in elderly participants with age-associated memory impairment: The Phospholipid Intervention for Cognitive Ageing Reversal (PLICAR): Study protocol for a randomized controlled trial. Current Controlled Trials in Cardiovascular Medicine, 14(1), Article 404. https://doi.org/10.1186/1745-6215-14-404
Hallais, M., Pontvianne, F., Andersen, P. R., Clerici, M., Lener, D., Benbahouche, N. E. H., Gostan, T., Vandermoere, F., Robert, M.-C., Cusack, S., Verheggen, C., Jensen, T. H. & Bertrand, E. (2013). CBC-ARS2 stimulates 3'-end maturation of multiple RNA families and favors cap-proximal processing. Nature Structural and Molecular Biology, 20(12), 1358-1366. https://doi.org/10.1038/nsmb.2720
Andersen, P. R., Domanski, M., Kristiansen, M. S., Storvall, H., Ntini, E., Verheggen, C., Schein, A., Bunkenborg, J., Poser, I., Hallais, M., Sandberg, R., Hyman, A., Lacava, J., Rout, M. P., Andersen, J. S., Bertrand, E. & Jensen, T. H. (2013). The human cap-binding complex is functionally connected to the nuclear RNA exosome. Nature Structural and Molecular Biology, 20(12), 1367-1376. https://doi.org/10.1038/nsmb.2703
Jensen, T. H., Jacquier, A. & Libri, D. (2013). Dealing with pervasive transcription. Molecular Cell, 52(4), 473-484. https://doi.org/10.1016/j.molcel.2013.10.032
Nielsen, I., Bentsen, I. B., Andersen, A. H., Gasser, S. M. & Bjergbæk, L. (2013). A Rad53 Independent Function of Rad9 Becomes Crucial for Genome Maintenance in the Absence of the RecQ Helicase Sgs1. PLoS One, 8(11), Article e81015. https://doi.org/10.1371/journal.pone.0081015
Hayashi, Y., Miclaus, T., Scavenius, C., Kwiatkowska, K., Sobota, A., Engelmann, P., Scott-Fordsmand, J. J., Enghild, J. J. & Sutherland, D. S. (2013). Species Differences Take Shape at Nanoparticles: Protein-Corona Made of the Native Repertoire Assists Cellular Interaction. Environmental Science & Technology, 47(24), 14367-14375. https://doi.org/10.1021/es404132w
Winther, K. S., Brodersen, D. E., Brown, A. K. & Gerdes, K. (2013). VapC20 of Mycobacterium tuberculosis Cleaves the Sarcin Ricin Loop of 23S rRNA. Nature Communications, 4, Article 2796. https://doi.org/10.1038/ncomms3796
Henriksen, C., Kjaer-Sorensen, K., Einholm, A. P., Madsen, L. B., Momeni, J., Bendixen, C., Oxvig, C., Vilsen, B. & Larsen, K. (2013). Molecular Cloning and Characterization of Porcine Na+/K+-ATPase Isoforms α1, α2, α3 and the ATP1A3 Promoter. PLoS One, 8(11), Article e79127. https://doi.org/10.1371/journal.pone.0079127
Maynard, S., Keijzers, G., Gram, M., Desler, C., Bendix, L., Budtz-Jørgensen, E., Molbo, D., Croteau, D. L., Osler, M., Stevnsner, T., Rasmussen, L. J., Dela, F., Avlund, K. & Bohr, V. (2013). Relationships between human vitality and mitochondrial respiratory parameters, reactive oxygen species production and dNTP levels in peripheral blood mononuclear cells. Nature Communications, 5(11), 850-864. http://www.impactaging.com/papers/v5/n11/abs/100618a.html
Tataru, P., Sand, A., Hobolth, A., Mailund, T. & Pedersen, C. N. S. (2013). Algorithms for Hidden Markov Models Restricted to Occurrences of Regular Expressions. Biology, 2(4), 1282-1295. https://doi.org/10.3390/biology2041282
Fukai, E., Stougaard, J. & Hayashi, M. (2013). Activation of an endogenous retrotransposon associated with epigenetic changes in Lotus japonicus: A tool for functional genomics in legumes. The Plant Genome, 6(3), 1-11. https://doi.org/10.3835/plantgenome2013.04.0009
Streja, E., Wu, C., Uldall, P. V., Grove, J., Arah, O. & Olsen, J. (2013). Congenital cerebral palsy, child sex and parent cardiovascular risk. PLoS One, 8(11), e79071. https://doi.org/10.1371/journal.pone.0079071
Malmos, K. G. & Otzen, D. E. (2013). Glycosaminoglycans and Fibrillar Polymorphism. In Bio-nanoimaging: Protein Misfolding and Aggregation (pp. 281-290). Elsevier Inc.. https://doi.org/10.1016/B978-0-12-394431-3.00026-2
Kløverpris, S., Gaidamauskas, E., Rasmussen, L. C. V., Overgaard, M. T., Kronborg, C., Knudsen, U. B., Christiansen, M., Kumar, A. & Oxvig, C. (2013). A robust immunoassay for pregnancy-associated plasma protein-A2 based on analysis of circulating antigen: establishment of normal ranges in pregnancy. Molecular Human Reproduction, 19(11), 756-763. https://doi.org/10.1093/molehr/gat047
Kloverpris, S., Gaidamauskas, E., Rasmussen, L. C. V., Overgaard, M. T., Kronborg, C., Knudsen, U. B., Christiansen, M., Kumar, A. & Oxvig, C. (2013). A robust immunoassay for pregnancy-associated plasma protein-A2 based on analysis of circulating antigen: Establishment of normal ranges in pregnancy. Molecular Human Reproduction, 19(11), 756-763. Article gat047. https://doi.org/10.1093/molehr/gat047
Minoux, M., Kratochwil, C. F., Ducret, S., Amin, S., Kitazawa, T., Kurihara, H., Bobola, N., Vilain, N. & Rijli, F. M. (2013). Mouse Hoxa2 mutations provide a model for microtia and auricle duplication. Development (Cambridge), 140(21), 4386-97. https://doi.org/10.1242/dev.098046
Andersen, K. R., Leksa, N. C. & Schwartz, T. U. (2013). Optimized E. coli expression strain LOBSTR eliminates common contaminants from His-tag purification. Proteins - Structure Function and Bioinformatics, 81(11), 1857-1861. https://doi.org/10.1002/prot.24364
Dalby, R. B., Elfving, B., Poulsen, P. H. P., Foldager, L., Frandsen, J., Videbech, P. & Rosenberg, R. (2013). Plasma brain-derived neurotrophic factor and prefrontal white matter integrity in late-onset depression and normal aging. Acta Psychiatrica Scandinavica, 128(5), 387-396. https://doi.org/10.1111/acps.12085
Hamming, O. J., Terczynska-Dyla, E., Vieyres, G., Dijkman, R., Jørgensen, S. E., Akhtar, H., Siupka, P., Pietschmann, T., Thiel, V. & Hartmann, R. (2013). Interferon lambda 4 signals via the IFNλ receptor to regulate antiviral activity against HCV and coronaviruses. EMBO Journal, 32, 3055-3065. https://doi.org/10.1038/emboj.2013.232
Juul, S., Iacovelli, F., Falconi, M., Kragh, S. L., Christensen, B. S., Hougaard, R. F., Franch, O., Kristoffersen, E. L., Stougaard, M., Leong, K. W., Ho, Y.-P., Sørensen, E. S., Birkedal, V., Desideri, A. & Knudsen, B. R. (2013). Temperature-Controlled Encapsulation and Release of an Active Enzyme in the Cavity of a Self-Assembled DNA Nanocage. ACS Nano, 7(11), 9724-9734. https://doi.org/10.1021/nn4030543
Fang, X., Wang, J., O'Carroll, I. P., Mitchell, M., Zuo, X., Wang, Y., Yu, P., Liu, Y., Rausch, J. W., Dyba, M. A., Kjems, J., Schwieters, C. D., Seifert, S., Winans, R. E., Watts, N. R., Stahl, S. J., Wingfield, P. T., Byrd, R. A., Le Grice, S. F. J. ... Wang, Y.-X. (2013). An unusual topological structure of the HIV-1 Rev response element. Cell, 155(3), 594-605. https://doi.org/10.1016/j.cell.2013.10.008
Jungmichel, S., Rosenthal, F., Altmeyer, M., Lukas, J., Hottiger, M. O. & Nielsen, M. L. (2013). Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses. Molecular Cell, 52(2), 272-285. https://doi.org/10.1016/j.molcel.2013.08.026
Nyegaard, S., Novakovic, V. A., Rasmussen, J. T. & Gilbert, G. E. (2013). Lactadherin inhibits secretory phospholipase A2 activity on pre-apoptotic leukemia cells. PLoS One, 8(10), 1-9. Article e77143. https://doi.org/10.1371/journal.pone.0077143
Godiksen, S., Soendergaard, C., Friis, S., Jensen, J. K., Bornholdt, J., Sales, K. U., Huang, M., Bugge, T. H. & Vogel, L. K. (2013). Detection of active matriptase using a biotinylated chloromethyl ketone Peptide. PLoS One, 8(10), 1-10. Article e77146. https://doi.org/10.1371/journal.pone.0077146
Ruetz, M., Salchner, R., Wurst, K., Fedosov, S. & Kräutler, B. (2013). Phenylethynylcobalamin: a light-stable and thermolysis-resistant organometallic vitamin B12 derivative prepared by radical synthesis. Angewandte Chemie International Edition, 52(43), 11406-9. https://doi.org/10.1002/anie.201305206
Karlsen, K. K., Okholm, A. H., Kjems, J. & Wengel, J. (2013). A quencher-free molecular beacon design based on pyrene excimer fluorescence using pyrene-labeled UNA (unlocked nucleic acid). Bioorganic & Medicinal Chemistry, 21(20), 6186-6190. http://www.sciencedirect.com/science/article/pii/S096808961300388X#MMCvFirst
Jensen, P. W., Falconi, M., Kristoffersen, E. L., Simonsen, A. T., Cifuentes, J. B., Marcussen, L., Hougaard, R. F., Vagner, J., Harmsen, C., Jensen, S. J., Ho, Y.-P., Withers, M. A., Lupski, J. R., Koch, J. E., Desideri, A., Knudsen, B. R. & Stougaard, M. (2013). Real-time detection of TDP1 activity using a fluorophore-quencher coupled DNA-biosensor. Biosensors and Bioelectronics, Volume 48, 230–237. https://doi.org/10.1016/j.bios.2013.04.019
Underhaug, J., Koldsø, H., Runager, K., Nielsen, J. T., Sørensen, C. S., Kristensen, T., Otzen, D., Karring, H., Malmendal, A., Schiøtt, B., Enghild, J. J. & Nielsen, N. C. (2013). Mutation in transforming growth factor beta induced protein associated with granular corneal dystrophy type 1 reduces the proteolytic susceptibility through local structural stabilization. BBA General Subjects, 1834(12), 2812–2822. https://doi.org/10.1016/j.bbapap.2013.10.008
Villumsen, B. H., Danielsen, J. R., Povlsen, L., Sylvestersen, K. B., Merdes, A., Beli, P., Yang, Y.-G., Choudhary, C. R., Nielsen, M. L., Mailand, N. & Bekker-Jensen, S. (2013). A new cellular stress response that triggers centriolar satellite reorganization and ciliogenesis. EMBO Journal, 32(23), 3029-3040. https://doi.org/10.1038/emboj.2013.223
Baranova, N. S., Foulcer, S. J., Briggs, D. C., Tilakaratna, V., Enghild, J. J., Milner, C. M., Day, A. J. & Richter, R. P. (2013). Inter-α-Inhibitor Impairs TSG-6-Induced Hyaluronan Cross-Linking. Journal of Biological Chemistry, 288, 29642-29653. https://doi.org/10.1074/jbc.M113.477422
Bajic, G., Yatime, L., Sim, R. B., Vorup-Jensen, T. & Andersen, G. R. (2013). Structural insight on the recognition of surface-bound opsonins by the integrin I domain of complement receptor 3. Proceedings of the National Academy of Sciences (PNAS), 110(41), 16426–16431. https://doi.org/10.1073/pnas.1311261110
Dueholm, M. S., Otzen, D. & Nielsen, P. H. (2013). Evolutionary Insight into the Functional Amyloids of the Pseudomonads. PLoS One, 8(10), 1-9. Article e76630. https://doi.org/10.1371/journal.pone.0076630
Roodbeen, R., Paaske, B., Jiang, L., Jensen, J. K., Christensen, A., Nielsen, J. T., Huang, M., Mulder, F. A. A., Nielsen, N. C., Andreasen, P. & Jensen, K. J. (2013). Bicyclic Peptide Inhibitor of Urokinase-Type Plasminogen Activator: Mode of Action. ChemBioChem, 14(16), 2179–2188. https://doi.org/10.1002/cbic.201300335
Kousted, T. M., Skjoedt, K., Petersen, S. V., Koch, C., Vitved, L., Sochalska, M., Lacroix, C., Andersen, L. M., Wind, T., Andreasen, P. A. & Jensen, J. K. (2013). Three monoclonal antibodies against the serpin protease nexin-1 prevent protease translocation. Thrombosis and Haemostasis, 111(1), 29-40. https://doi.org/10.1160/TH13-04-0340
Mader, J. R., Resch, Z. T., McLean, G. R., Mikkelsen, J. H., Oxvig, C., Marler, R. J. & Conover, C. A. (2013). Mice deficient in PAPP-A show resistance to the development of diabetic nephropathy. Journal of Endocrinology, 219(1), 51-58. https://doi.org/10.1530/JOE-13-0167
Strathe, A. B., Velander, I. H., Mark, T., Ostersen, T., Hansen, C. & Kadarmideen, H. N. (2013). Genetic parameters for male fertility and its relationship to skatole and androstenone in Danish Landrace boars. Journal of Animal Science, 91(10), 4659-4668. https://doi.org/10.2527/jas.2013-6454
Laroche, F. J. F., Tulotta, C., Lamers, G. E. M., Meijer, A. H., Yang, P., Verbeek, F. J., Blaise, M., Stougaard, J. & Spaink, H. P. (2013). The embryonic expression patterns of zebrafish genes encoding LysM-domains. Gene Expression Patterns, 13(7), 212-224. https://doi.org/10.1016/j.gep.2013.02.007
Vallese, D., Negroni, E., Duguez, S., Ferry, A., Trollet, C., Aamiri, A., Vosshenrich, C. A., Füchtbauer, E.-M., Di Santo, J. P., Vitiello, L., Butler-Browne, G. & Mouly, V. (2013). The Rag2-I/2rb-Dmd- Mouse: a Novel Dystrophic and Immunodeficient Model to Assess Innovating Therapeutic Strategies for Muscular Dystrophies. Molecular Therapy, 21(10), 1950-1957. https://doi.org/10.1038/mt.2013.186
Hansen, T. B., Kjems, J. & Damgaard, C. K. (2013). Circular RNA and miR-7 in Cancer. Cancer Research, 73(18), 5609-5612. https://doi.org/10.1158/0008-5472.CAN-13-1568

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Lisbeth Heilesen