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Department of Molecular Biology and Genetics

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Latest peer-reviewed publications at MBG

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Displaying results 3501 to 136 out of 136

Peer-reviewed publications at MBG - all years

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Mailund, T., Halager, A. E. & Westergaard, M. (2012). Using colored Petri nets to construct coalescent hidden markov models: Automatic translation from demographic specifications to efficient inference methods. Lecture Notes in Computer Science, 7347, 32-50. https://doi.org/10.1007/978-3-642-31131-4_3

Abdallah, M., Larsen, N., Grove, J., Nørgaard-Pedersen, B., Thorsen, P., Mortensen, E. L. & Hougaard, D. M. (2012). Amniotic Fluid Chemokines and Autism Spectrum Disorders: An Exploratory Study Utilizing a Danish Historic Birth Cohort. Brain, Behavior, and Immunity, 26(1), 170-176. https://doi.org/10.1016/j.bbi.2011.09.003

Greibe, E. H., Fedosov, S., Sørensen, B. S., Højrup, P., Poulsen, S. S. & Nexø, E. (2012). A Single Rainbow Trout Cobalamin-Binding Protein Stands in for Three Human Binders. Journal of Biological Chemistry, 287(40), 33917-33925.

Kjærgaard, M. & Poulsen, F. M. (2012). Disordered proteins studied by chemical shifts. Progress in Nuclear Magnetic Resonance Spectroscopy, 60, 42-51. https://doi.org/10.1016/j.pnmrs.2011.10.001

Ditte Caroline Andersen, D. C., Kristiansen, G. Q., Jensen, L., Füchtbauer, E.-M., Schrøder, H. D. & Jensen, C. H. (2012). Quantitative gene expression profiling of CD45⁺ and CD45^- skeletal muscle-derived side population cells. Cytometry. Part A, 81A(1), 72. https://doi.org/10.1002/cyto.a.21121

Mantri, M., Webby, C. J., Loik, N. D., Hamed, R. B., Nielsen, M. L., McDonough, M. A., McCullagh, J. S. O., Böttger, A., Schofield, C. J. & Wolf, A. (2012). Self-hydroxylation of the splicing factor lysyl hydroxylase, JMJD6. MedChemComm, 3(1), 80-85. https://doi.org/10.1039/c1md00225b

Dai, N., Foldager, L., Gallego, J. A., Hack, L. M., Ji, Y., Lett, T. A. P., Liu, B., Loken, E. K., Mandelli, L., Mehta, D., Power, R. A., Sprooten, E., Stephens, S. H., Paska, A. V., Yan, J., Zai, C. C., Zai, G., Zhang-James, Y., O'Shea, A. & DeLisi, L. E. (2012). Summaries from the XIX World Congress of Psychiatric Genetics, Washington, DC, September 10-14 2011. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 159B(1), 128-129. https://doi.org/10.1002/ajmg.b.32017

Wang, W.-Q., Cheng, H.-Y., Møller, I. M. & Song, S.-Q. (2012). The role of recovery of mitochondrial structure and function in desiccation tolerance of pea seeds. Physiologia Plantarum, 144(1), 20-34. https://doi.org/10.1111/j.1399-3054.2011.01518.x

Hansen, T. Ø., Sarup, P. M., Loeschcke, V. & Rattan, S. (2012). Age-related and sex-specific differences in proteasome activity in individual Drosophila flies from wild type, longevity-selected and stress resistant strains. Biogerontology, 13(4), 429-438. https://doi.org/10.1007/s10522-012-9387-2

Egerod, K. L., Engelstoft, M. S., Grunddal, K. V., Nøhr, M. K., Secher, A. E. L., Sakata, I., Pedersen, J., Windeløv, J. A., Füchtbauer, E.-M., Olsen, J., Sundler, F., Christensen, J. P., Wierup, N., Olsen, J. V., Holst, J. J., Zigman, J. M., Poulsen, S. S. & Schwartz, T. W. (2012). A major lineage of enteroendocrine cells coexpress CCK, secretin, GIP, GLP-1, PYY, and neurotensin but not somatostatin. Contemporary Endocrinology, 153(12), 5782-5795. https://doi.org/10.1210/en.2012-1595

Kjærgaard, M., Poulsen, F. M. & Kragelund, B. B. (2012). Analyzing temperature-induced transitions in disordered proteins by NMR spectroscopy and secondary chemical shift analyses. Methods in molecular biology (Clifton, N.J.), 896, 249-56. https://doi.org/10.1007/978-1-4614-3704-8_16

Jin, X., He, M., Ferguson, B., Meng, Y., Ouyang, L., Ren, J., Mailund, T., Sun, F., Sun, L., Shen, J., Zhuo, M., Song, L., Wang, J., Ling, F., Zhu, Y., Hvilsom, C., Siegismund, H., Liu, X., Gong, Z. ... Wang, X. (2012). An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes. PLoS One, 7(7), e40637. https://doi.org/10.1371/journal.pone.0040637

Mailund, T., Halager, A. E., Westergaard, M., Dutheil, J. Y., Munch, K., Andersen, L. N., Lunter, G., Prüfer, K., Scally, A., Hobolth, A. & Schierup, M. H. (2012). A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species. PLoS Genetics, 8(12), e1003125. https://doi.org/10.1371/journal.pgen.1003125

Stukenbrock, E. H. & Bataillon, T. (2012). A population genomics perspective on the emergence and adaptation of new plant pathogens in agro-ecosystems. PLoS Pathogens, 8(9), e1002893. https://doi.org/10.1371/journal.ppat.1002893

Weber, M., Tome, L., Otzen, D. & Schneider, D. (2012). A Ser residue influences the structure and stability of a Pro-kinked transmembrane helix dimer. BBA General Subjects, 1818(9), 2103-7. https://doi.org/10.1016/j.bbamem.2012.04.003

Besenbacher, S., Mailund, T. & Schierup, M. H. (2012). Association mapping and disease: evolutionary perspectives. Methods in Molecular Biology, 856, 275-91. https://doi.org/10.1007/978-1-61779-585-5_11

Lubas, M. S., Chlebowski , A., Dziembowski , A. & Jensen, T. H. (2012). Biochemistry and Function of the RNA Exosomes. In G. F. Chanfreau & F. Tamanoi (Eds.), The Enzymes: Eukaryotic RNases and their Partners in RNA Degradation and Biogenesis, Part A (Vol. 31, pp. 1-30). Elsevier. https://doi.org/10.1016/B978-0-12-404740-2.00001-X

Rattan, S. I. S. (2012). Biogerontology: from here to where? The Lord Cohen Medal Lecture-2011. Biogerontology, 13(1), 83-91. https://doi.org/10.1007/s10522-011-9354-3

Kadarmideen, H. N. & Watson-Haigh, N. S. (2012). Building gene co-expression networks using transcriptomics data for systems biology investigations: Comparison of methods using microarray data. Bioinformation, 8(18), 855-61. https://doi.org/10.6026/97320630008855

Ho-Huu, J., Ronfort, J., De Mita, S., Bataillon, T., Hochu, I., Weber, A. & Chantret, N. (2012). Contrasted patterns of selective pressure in three recent paralogous gene pairs in the Medicago genus (L.). BMC Evolutionary Biology, 12, 195. https://doi.org/10.1186/1471-2148-12-195

Lorentzen, E. & Conti, E. (2012). Crystal structure of a 9-subunit archaeal exosome in pre-catalytic states of the phosphorolytic reaction. Archaea, 2012, 721869.

Christensen, B. S., Kläning, E., Nielsen, M. S., Andersen, M. H. & Sørensen, E. S. (2012). C-terminal Modification of Osteopontin Inhibits Interaction with the αVβ3-Integrin. Journal of Biological Chemistry, 287, 3788-3797.

Elfving, B., Buttenschøn, H. N., Foldager, L., Poulsen, P. H. P., Andersen, J. H., Grynderup, M. B., Hansen, A. M., Kolstad, H. A., Kaerlev, L., Mikkelsen, S., Thomsen, J. F., Børglum, A. D., Wegener, G. & Mors, O. (2012). Depression, the Val66Met polymorphism, age, and gender influence the serum BDNF level. Journal of Psychiatric Research, 46(9), 1118-1125. https://doi.org/10.1016/j.jpsychires.2012.05.003

Bramsen, J. B. & Kjems, J. (2012). Development of Therapeutic-Grade Small Interfering RNAs by Chemical Engineering. Frontiers in Genetics, 3, 154. https://doi.org/10.3389/fgene.2012.00154

Rasmussen, M. K., Zamaratskaia, G., Andersen, B. & Ekstrand, B. (2012). Dried chicory root modifies the activity and expression of porcine hepatic CYP3A but not 2C – Effect of in vitro and in vivo exposure. Food and Chemical Toxicology, 50(11), 4175-4179. https://doi.org/10.1016/j.fct.2012.08.024

Hayashi, Y., Engelmann, P., Foldbjerg, R., Szabó, M., Somogyi, I., Pollák, E., Molnár, L., Autrup, H., Sutherland, D. S., Scott-Fordsmand, J. J. & Heckmann, L.-H. (2012). Earthworms and Humans in Vitro: Characterizing Evolutionarily Conserved Stress and Immune Responses to Silver Nanoparticles. Environmental Science & Technology, 46, 4166-4173. https://doi.org/10.1021/es3000905

Gupta, V., Markmann, K., Pedersen, C. N. S., Stougaard, J. & Andersen, S. U. (2012). shortran: A pipeline for small RNA-seq data analysis. Bioinformatics, 28(20), 2698-2700. https://doi.org/10.1093/bioinformatics/bts496

Pedersen, C. N. S., Axelsen, K. B., Harper, J. F. & Palmgren, M. G. (2012). Evolution of plant P-type ATPases. Frontiers in Plant Science, 21. https://doi.org/10.3389/fpls.2012.00031

Ulrich, A., Andersen, K. R. & Schwartz, T. U. (2012). Exponential megapriming PCR (EMP) cloning-seamless DNA insertion into any target plasmid without sequence constraints. PLoS One, 7(12), e53360. https://doi.org/10.1371/journal.pone.0053360

Hvilsom, C., Qian, Y., Bataillon, T., Li, Y., Mailund, T., Sallé, B., Carlsen, F., Li, R., Zheng, H., Jiang, T., Jiang, H., Jin, X., Munch, K., Hobolth, A., Siegismund, H. R., Wang, J. & Schierup, M. H. (2012). Extensive X-linked adaptive evolution in central chimpanzees. Proceedings of the National Academy of Sciences (PNAS). https://doi.org/10.1073/pnas.1106877109

Chen, M., Le, D. Q. S., Hein, S., Li, P., Nygaard, J. V., Kassem, M., Kjems, J., Besenbacher, F. & Bünger, C. (2012). Fabrication and characterization of a rapid prototyped tissue engineering scaffold with embedded multicomponent matrix for controlled drug release. International Journal of Nanomedicine (Online), (7), 4285-97. https://doi.org/10.2147/IJN.S33083

Jensen, S. M. R., Schmitz, A., Pedersen, F. S., Kjems, J. & Bramsen, J. B. (2012). Functional selection of shRNA loops from randomized retroviral libraries. PLoS One, 7(8), e43095. https://doi.org/10.1371/journal.pone.0043095

Ali, A. A., Oneill, C. J., Thomson, P. C. & Kadarmideen, H. N. (2012). Genetic parameters of infectious bovine keratoconjunctivitis and its relationship with weight and parasite infestations in Australian tropical Bos taurus cattle. Genetics Selection Evolution, 44(1), Article 22. https://doi.org/10.1186/1297-9686-44-22

Holmstrup, M., Sørensen, J. G., Maraldo, K., Schmidt, I., Tietema, A., Smith, A., Schmelz, R., Bataillon, T. & Ehlers, B. (2012). Increased frequency of drought depletes species richness of enchytraeid communities in both wet and dry heathland soils. Soil Biology & Biochemistry, 53, 43-49. https://doi.org/10.1016/j.soilbio.2012.05.001

Holmstrup, M., Sørensen, J. G., Maraldo, K., Schmidt, I. K., Mason, S., Tietema, A., Smith, A. R., Emmett, B., Schmelz, R., Bataillon, T., Beier, C. & Ehlers, B. K. (2012). Increased frequency of drought reduces species richness of enchytraeid communities in both wet and dry heathland soils. Soil Biology & Biochemistry, 53, 43-49. https://doi.org/10.1016/j.soilbio.2012.05.001

W. Abdallah, M., M. Hougaard, D., Nørgaard-Pedersen, B., Grove, J., Bonefeld-Jørgensen, E. C. & L. Mortensen, E. (2012). Infections during Pregnancy and after birth and risk of autism spectrum disorders: a register-based study utilizing a Danish historic birth cohort. Turk Psikiyatri Dergisi, 23(4). https://doi.org/10.5080/u6847

Scally, A., Dutheil, J. Y., Hillier, L. W., Jordan, G. E., Goodhead, I., Herrero, J., Hobolth, A., Lappalainen, T., Mailund, T., Marques-Bonet, T., McCarthy, S., Montgomery, S. H., Schwalie, P. C., Tang, Y. A., Ward, M. C., Xue, Y., Yngvadottir, B., Alkan, C., Andersen, L. N. ... Durbin, R. (2012). Insights into hominid evolution from the gorilla genome sequence. Nature, 483(7388), 169-75. https://doi.org/10.1038/nature10842

Lopez-Gomez, M., Sandal, N., Stougaard, J. & Boller, T. (2012). Interplay of flg22-induced defence responses and nodulation in Lotus japonicus. Journal of Experimental Botany, 63(1), 393-401. https://doi.org/10.1093/jxb/err291

Bouraï, M., Lucas-Hourani, M., Gad, H. H., Drosten, C., Jacob, Y., Tafforeau, L., Cassonnet, P., Jones, L. M., Judith, D., Couderc, T., Lecuit, M., André, P., Kümmerer, B. M., Lotteau, V., Desprès, P., Tangy, F. & Vidalain, P.-O. (2012). Mapping of Chikungunya virus interactions with host proteins identified nsP2 as a highly connected viral component. Indian Journal of Virology, 86(6), 3121-34. https://doi.org/10.1128/JVI.06390-11

Calcutta, A., Jessen, C. M., Behrens, M. A., Oliveira, C. L. P., Renart, M. L., González-Ros, J. M., Otzen, D., Pedersen, J. S., Malmendal, A. & Nielsen, N. C. (2012). Mapping of unfolding states of integral helical membrane proteins by GPS-NMR and scattering techniques: TFE-induced unfolding of KcsA in DDM surfactant. Biochimica et Biophysica Acta - Biomembranes, 1818(9), 2290-301. https://doi.org/10.1016/j.bbamem.2012.04.005

Ehlers, B. K., Grøndahl, E., Ronfort, J. & Bataillon, T. (2012). "Ménage à trois": the presence/absence of thyme shapes the mutualistic interaction between the host plant Medicago truncatula (Fabaceae) and its symbiotic bacterium Sinorhizobium meliloti. Ecology and Evolution, 2(7), 1676-81. https://doi.org/10.1002/ece3.270

Ehlers, B., Grøndahl, E., Ronfort, J. & Bataillon, T. (2012). “Ménage a trois”: Can the presence/absence of thyme shape the mutualistic interaction between Medicago truncatula and Sinorhizobium meliloti? Ecology and Evolution, 7, 1676-1681. Article 7.

Montanini, L., Lasagna, L., Barili, V., Jonstrup, S. P., Murgia, A., Pazzaglia, L., Conti, A., Novello, C., Kjems, J., Perris, R. & Benassi, M. S. (2012). MicroRNA cloning and sequencing in osteosarcoma cell lines:differential role of miR-93. Cellular Oncology (Dordrecht), 35(1), 29-41. https://doi.org/10.1007/s13402-011-0059-z

Gredilla, R. & Stevnsner, T. (2012). Mitochondrial base excision repair assays. In L. Bjergbæk (Ed.), Methods in Molecular Biology : DNA Repair Protocols (Vol. 920, pp. 289-304). Humana Press. https://doi.org/10.1007/978-1-61779-998-3_20

Diaz, R. G., Weissman, L., Yang, JL., Bohr, V. & Stevnsner, T. V. (2012). Mitochondrial base excision repair in mouse synaptosomes during normal aging and in a model of Alzheimer's disease. Neurobiology of Aging, 33(4), 694-707.

Andreasen, M., Nielsen, S. B., Mittag, T., Bjerring, M., Nielsen, J. T., Zhang, S., Nielsen, E. H., Jeppesen, M., Christiansen, G., Besenbacher, F., Dong, M., Nielsen, N. C., Skrydstrup, T. & Otzen, D. E. (2012). Modulation of fibrillation of hIAPP core fragments by chemical modification of the peptide backbone. Biochimica et Biophysica Acta - Proteins and Proteomics, 1824(2), 274-85. https://doi.org/10.1016/j.bbapap.2011.10.014

Mühlemann, O. & Jensen, T. H. (2012). mRNP quality control goes regulatory. Trends in Genetics, 28(2), 70-77. https://doi.org/10.1016/j.tig.2011.11.001

Nielsen, S. B., Yde, P., Giehm, L., Sundbye, S., Christiansen, G., Matthiesen, J., Jensen, M. H., Jensen, P. H. & Otzen, D. E. (2012). Multiple Roles of Heparin in the Aggregation of p25α. Journal of Molecular Biology. https://doi.org/10.1016/j.jmb.2012.01.050

Abdallah, M., Larsen, N., Mortensen, E. L., Atladóttir, H. Ó., Nørgaard-Pedersen, B., Bonefeld-Jørgensen, E. C., Grove, J. & Hougaard, D. M. (2012). Neonatal levels of cytokines and risk of autism spectrum disorders: An exploratory register-based historic birth cohort study utilizing the Danish Newborn Screening Biobank. Journal of Neuroimmunology, 252, 75-82. https://doi.org/10.1016/j.jneuroim.2012.07.013

Otzen, D. (2012). N for AsN - O for StrOcture? A strand-loop-strand motif for prokaryotic O-glycosylation. Molecular Oral Microbiology. https://doi.org/10.1111/j.1365-2958.2012.07972.x

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Lisbeth Heilesen