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Pedersen, H., Jensen, R. K., Hansen, A. G., Petersen, S. V., Thiel, S., Laursen, N. S. & Andersen, G. R. (2022). Structure-Guided Engineering of a Complement Component C3-Binding Nanobody Improves Specificity and Adds Cofactor Activity. Frontiers in Immunology, 13, [872536]. https://doi.org/10.3389/fimmu.2022.872536

Overgaard, C. K., Tao, K., Zhang, S., Christensen, B. T., Blahovska, Z., Radutoiu, S., Kelly, S. & Dueholm, M. K. D. (2022). Application of ecosystem-specific reference databases for increased taxonomic resolution in soil microbial profiling. Frontiers in Microbiology, 13, [942396]. https://doi.org/10.3389/fmicb.2022.942396

Otzen, D. E., Pedersen, J. N., Rasmussen, H. Ø. & Pedersen, J. S. (2022). How do surfactants unfold and refold proteins? Advances in Colloid and Interface Science, 308, 102754. https://doi.org/10.1016/j.cis.2022.102754

Otzen, D. E. (2022). Functional amyloid in a lipid-like environment: a merry dance of many steps. Essays in Biochemistry, 66(7). https://doi.org/10.1042/EBC20220062

Ommen, P., Hansen, L., Hansen, B. K., Vu-Quang, H., Kjems, J. & Meyer, R. L. (2022). Aptamer-Targeted Drug Delivery for Staphylococcus aureus Biofilm. Frontiers in cellular and infection microbiology, 12, [814340]. https://doi.org/10.3389/fcimb.2022.814340

Nørgård, M., Steffensen, L. B., Hansen, D. R., Füchtbauer, E. M., Engelund, M. B., Dimke, H., Andersen, D. C. & Svenningsen, P. (2022). A new transgene mouse model using an extravesicular EGFP tag enables affinity isolation of cell-specific extracellular vesicles. Scientific Reports, 12, [496]. https://doi.org/10.1038/s41598-021-04512-0

Nielsen, J., Brandt, J., Boesen, T., Hummelshøj, T., Slaaby, R., Schluckebier, G. & Nissen, P. (2022). Structural investigations of full-length insulin receptor dynamics and signalling. Journal of Molecular Biology, 434(5), [167458]. https://doi.org/10.1016/j.jmb.2022.167458

Nielsen, N. S., Zarantonello, A., Harwood, S. L., Jensen, K. T., Kjøge, K., Thøgersen, I. B., Schauser, L., Karlsen, J. L., Andersen, G. R. & Enghild, J. J. (2022). Cryo-EM structures of human A2ML1 elucidate the protease-inhibitory mechanism of the A2M family. Nature Communications, 13(1), [3033]. https://doi.org/10.1038/s41467-022-30758-x

Nielsen, A. F., Bindereif, A., Bozzoni, I., Hanan, M., Hansen, T. B., Irimia, M., Kadener, S., Kristensen, L. S., Legnini, I., Morlando, M., Olesen, M. T. J., Pasterkamp, R. J., Preibisch, S., Rajewsky, N., Sünkel, C. & Kjems, J. (2022). Best practice standards for circular RNA research. Nature Methods, 19(10), 1208-1220. https://doi.org/10.1038/s41592-022-01487-2

Nguyen, M. T. A., Pothoulakis, G. & Andersen, E. S. (2022). Synthetic Translational Regulation by Protein-Binding RNA Origami Scaffolds. A C S Synthetic Biology, 11(5). https://doi.org/10.1021/acssynbio.1c00608

Neumann, C., Focht, D., Trampari, S., Lyons, J. A. & Nissen, P. (2022). Variations on a theme: Crystal forms of the amino-acid transporter MhsT. Acta Crystallographica Section F: Structural Biology Communications, 78(Part 8), 297-305. https://doi.org/10.1107/S2053230X22007154

Neumann, C., Rosenbaek, L. L., Flygaard, R. K., Habeck, M., Karlsen, J. L., Wang, Y., Lindorff-Larsen, K., Gad, H. H., Hartmann, R., Lyons, J. A., Fenton, R. A. & Nissen, P. (2022). Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity. The EMBO Journal, 41(23), [e110169]. https://doi.org/10.15252/embj.2021110169

Nayeri, Z., Aliakbari, F., Afzali, F., Parsafar, S., Gharib, E., Otzen, D. E. & Morshedi, D. (2022). Characterization of exogenous αSN response genes and their relation to Parkinson's disease using network analyses. Frontiers in Pharmacology, 13, [966760]. https://doi.org/10.3389/fphar.2022.966760

Nagaraj, M., Najarzadeh, Z., Pansieri, J., Biverstål, H., Musteikyte, G., Smirnovas, V., Matthews, S., Emanuelsson, C., Johansson, J., Buxbaum, J. N., Morozova-Roche, L. & Otzen, D. E. (2022). Chaperones mainly suppress primary nucleation during formation of functional amyloid required for bacterial biofilm formation. Chemical Science, 13(2), 536-553. https://doi.org/10.1039/d1sc05790a

Møhlenberg, M., O’Brien, T. R. & Hartmann, R. (2022). The role of IFNL4 in liver inflammation and progression of fibrosis. Genes and Immunity, 23(3-4), 111-117. https://doi.org/10.1038/s41435-022-00173-9

Møhlenberg, M., Eriksen, P. L., Laursen, T. L., Nielsen, M. B., Hamilton-Dutoit, S. J., Grønbæk, H., Hartmann, R. & Thomsen, K. L. (2022). The presence of interferon affects the progression of non-alcoholic fatty liver disease. Genes and Immunity, 23(5), 157–165. https://doi.org/10.1038/s41435-022-00176-6

Märcher, A., Kumar, V., Andersen, V. L., El-Chami, K., Nguyen, T. J. D., Skaanning, M. K., Rudnik-Jansen, I., Nielsen, J. S., Howard, K. A., Kjems, J. & Gothelf, K. V. (2022). Functionalized Acyclic (l)-Threoninol Nucleic Acid Four-Way Junction with High Stability In Vitro and In Vivo. Angewandte Chemie - International Edition, 61(24), [202115275]. https://doi.org/10.1002/anie.202115275

Murphy, K. M., Poretsky, E., Liu, H., Micic, N., Nyhuis, A., Bohlmann, J., Schmelz, E. A., Zerbe, P., Huffaker, A. & Bjarnholt, N. (2022). Shielding the oil reserves: The scutellum as a source of chemical defenses. Plant Physiology, 188(4), 1944-1949. https://doi.org/10.1093/plphys/kiac038

Mohammad-Beigi, H., Zanganeh, M., Scavenius, C., Eskandari, H., Farzadfard, A., Shojaosadati, S. A., Enghild, J. J., Otzen, D. E., Buell, A. K. & Sutherland, D. S. (2022). A Protein Corona Modulates Interactions of α-Synuclein with Nanoparticles and Alters the Rates of the Microscopic Steps of Amyloid Formation. ACS Nano, 16(1), 1102-1118. https://doi.org/10.1021/acsnano.1c08825

Mogensen, E. H., Poulsen, E. T., Thøgersen, I. B., Yamamoto, K., Brüel, A. & Enghild, J. J. (2022). The low-density lipoprotein receptor-related protein 1 (LRP1) interactome in the human cornea. Experimental Eye Research, 219, [109081]. https://doi.org/10.1016/j.exer.2022.109081

Moeskjær, S., Skovbjerg, C. K., Tausen, M., Wind, R., Roulund, N., Janss, L. & Andersen, S. U. (2022). Major effect loci for plant size before onset of nitrogen fixation allow accurate prediction of yield in white clover. Theoretical and Applied Genetics, 135(1), 125-143. https://doi.org/10.1007/s00122-021-03955-3

Mitchell, C. W., Czajewski, I. & van Aalten, D. M. F. (2022). Bioinformatic prediction of putative conveyers of O-GlcNAc Transferase intellectual disability. The Journal of Biological Chemistry, 298(9), [102276]. https://doi.org/10.1016/j.jbc.2022.102276

Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A. ... McHardy, A. C. (2022). Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods, 19(4), 429-440. https://doi.org/10.1038/s41592-022-01431-4

Meron, E., Thaysen, M., Angeli, S., Antebi, A., Barzilai, N., Baur, J. A., Bekker-Jensen, S., Birkisdottir, M., Bischof, E., Bruening, J., Brunet, A., Buchwalter, A., Cabreiro, F., Cai, S., Chen, B. H., Ermolaeva, M., Ewald, C. Y., Ferrucci, L., Florian, M. C. ... Scheibye-Knudsen, M. (2022). Meeting Report: Aging Research and Drug Discovery. Aging, 14(2), 532-543. https://doi.org/10.18632/aging.203859

Meisl, G., Xu, C. K., Taylor, J. D., Michaels, T. C. T., Levin, A., Otzen, D., Klenerman, D., Matthews, S., Linse, S., Andreasen, M. & Knowles, T. P. J. (2022). Uncovering the universality of self-replication in protein aggregation and its link to disease. Science Advances, 8(32), [eabn6831]. https://doi.org/10.1126/sciadv.abn6831

Matzke, M., Toft, S., Bechsgaard, J., Pold Vilstrup, A., Uhl, G., Künzel, S., Tuni, C. & Bilde, T. (2022). Sperm competition intensity affects sperm precedence patterns in a polyandrous gift-giving spider. Molecular Ecology, 31(8), 2435-2452. https://doi.org/10.1111/mec.16405

Martín-Rivada, Á., Guerra-Cantera, S., Campillo-Calatayud, A., Andrés-Esteban, E. M., Sánchez Holgado, M., Martos-Moreno, G., Pozo, J., Güemes, M., Soriano-Guillén, L., Pellicer, A., Oxvig, C., Frystyk, J., Chowen, J. A., Barrios, V. & Argente, J. (2022). Pappalysins and Stanniocalcins and Their Relationship With the Peripheral IGF Axis in Newborns and During Development. The Journal of clinical endocrinology and metabolism, 107(10), 2912-2924. https://doi.org/10.1210/clinem/dgac453

Marquez-Legorreta, E., Constantin, L., Piber, M., Favre-Bulle, I. A., Taylor, M. A., Blevins, A. S., Giacomotto, J., Bassett, D. S., Vanwalleghem, G. C. & Scott, E. K. (2022). Brain-wide visual habituation networks in wild type and fmr1 zebrafish. Nature Communications, 13(1), [895]. https://doi.org/10.1038/s41467-022-28299-4

Madzharova, F., Bregnhøj, M., Chatterley, A. S., Løvschall, K. B., Drace, T., Andersen Dreyer, L. S., Boesen, T. & Weidner, T. (2022). Electrostatics Trigger Interfacial Self-Assembly of Bacterial Ice Nucleators. Biomacromolecules, 23(2), 505-512. https://doi.org/10.1021/acs.biomac.1c01217

Maccio, U., Mihic, A., Lenggenhager, D., Kolm, I., Mittmann, C., Heikenwälder, M., Lorentzen, A. & Mihic-Probst, D. (2022). Hypoxia and Ezrin Expression in Primary Melanoma Have High Prognostic Relevance. International Journal of Molecular Sciences , 23(18), [10745]. https://doi.org/10.3390/ijms231810745

Lorentzen, J., Pedersen, D. V., Gadeberg, T. A. F. & Andersen, G. R. (2022). Structure determination of an unstable macromolecular complex enabled by nanobody-peptide bridging. Protein Science, 31(10), [e4432]. https://doi.org/10.1002/pro.4432

Leslie, J. S., Hjeij, R., Vivante, A., Bearce, E. A., Dyer, L., Wang, J., Rawlins, L., Kennedy, J., Ubeyratna, N., Fasham, J., Irons, Z. H., Craig, S. B., Koenig, J., George, S., Pode-Shakked, B., Bolkier, Y., Barel, O., Mane, S., Frederiksen, K. K. ... Baple, E. L. (2022). Biallelic DAW1 variants cause a motile ciliopathy characterized by laterality defects and subtle ciliary beating abnormalities. Genetics in Medicine, 24(11), 2249-2261. https://doi.org/10.1016/j.gim.2022.07.019

Lassen, L. B., Thomsen, M. S., Basso, E., Füchtbauer, E. M., Füchtbauer, A., Outeiro, T. F., Jensen, P. H. & Moos, T. (2022). Mutation of Tyrosine Sites in the Human Alpha-Synuclein Gene Induces Neurotoxicity in Transgenic Mice with Soluble Alpha-Synuclein Oligomer Formation. Cells, 11(22), [3673]. https://doi.org/10.3390/cells11223673

Larsen, K., Christensen, T. B., Højberg, O. & Sørensen, M. T. (2022). Exposure of pigs to glyphosate affects gene-specific DNA methylation and gene expression. Toxicology reports, 9, 298-310. https://doi.org/10.1016/j.toxrep.2022.02.007

Larsen, K. E. (Producer). (2022). Balaena mysticetus Nei-like DNA glycosylase 3 (NEIL3) mRNA, partial cds. GenBank Access No. OL770101. Dataset

Larsen, K. E. (Producer). (2022). Sus scrofa domesticus mesenecephalic astrocyte-derived neurotrophic factor (MANF) gene, promoter region and partial cds. GenBank Access No. OK337617. Dataset

Larsen, K. E. (Producer). (2022). Sus scrofa domesticus cerebral dopamine neurotrophic factor (CDNF) mRNA, complete cds. GenBank Access No. OK268246. Dataset

Langousis, G., Cavadini, S., Boegholm, N., Lorentzen, E., Kempf, G. & Matthias, P. (2022). Structure of the ciliogenesis-associated CPLANE complex. Science Advances, 8(15), [eabn0832]. https://doi.org/10.1126/sciadv.abn0832

Kristensen, L. S., Jakobsen, T., Hager, H. & Kjems, J. (2022). The emerging roles of circRNAs in cancer and oncology. Nature Reviews. Clinical Oncology, 19(3), 188-206. https://doi.org/10.1038/s41571-021-00585-y

Kristensen, M. F., Sorensen, E. S., Del Rey, Y. C. & Schlafer, S. (2022). Prevention of Initial Bacterial Attachment by Osteopontin and Other Bioactive Milk Proteins. Biomedicines, 10(8), [1922]. https://doi.org/10.3390/biomedicines10081922

Kobberø, S. D., Gajhede, M., Mirza, O. A., Kløverpris, S., Kjær, T. R., Mikkelsen, J. H., Boesen, T. & Oxvig, C. (2022). Structure of the proteolytic enzyme PAPP-A with the endogenous inhibitor stanniocalcin-2 reveals its inhibitory mechanism. Nature Communications, 13(1), [6084]. https://doi.org/10.1038/s41467-022-33698-8

Kjærgaard, M., Rasmussen, L. S., Vinther, J. N., Andersen, K. R., Andersen, E. S., Lorentzen, E., Thirup, S. S., Otzen, D. & Brodersen, D. E. (2022). A Semester-Long Learning Path Teaching Computational Skills via Molecular Graphics in PyMOL. The Biophysicist, 3(2), 106–114. https://doi.org/10.35459/tbp.2022.000219

Kjaergaard, M. (2022). Estimation of Effective Concentrations Enforced by Complex Linker Architectures from Conformational Ensembles. Biochemistry, 61(3), 171-182. https://doi.org/10.1021/acs.biochem.1c00737

Kitazawa, T., Minoux, M., Ducret, S. & Rijli, F. M. (2022). Different Ectopic Hoxa2 Expression Levels in Mouse Cranial Neural Crest Cells Result in Distinct Craniofacial Anomalies and Homeotic Phenotypes. Journal of developmental biology, 10(1), [9]. https://doi.org/10.3390/jdb10010009

Khateb, H., Sørensen, R. S., Cramer, K., Eklund, A. S., Kjems, J., Meyer, R. L., Jungmann, R. & Sutherland, D. S. (2022). The Role of Nanoscale Distribution of Fibronectin in the Adhesion of Staphylococcus aureus Studied by Protein Patterning and DNA-PAINT. ACS Nano, 16(7), 10392-10403. https://doi.org/10.1021/acsnano.2c00630

Keller-Socin, J. G., Petersen, K. V., Knudsen, B. R. & Tesauro, C. (2022). Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer. In Simple and Fast DNA-Based Tool to Investigate Topoisomerase 1 Activity, a Biomarker for Drug Susceptibility in Colorectal Cancer InTechOpen. https://doi.org/doi.org/10.5772/intechopen.105758

Keller, J. G., Hymøller, K. M., Thorsager, M. E., Hansen, N. Y., Erlandsen, J. U., Tesauro, C., Simonsen, A. K. W., Andersen, A. B., Vandsø Petersen, K., Holm, L. L., Stougaard, M., Andresen, B. S., Kristensen, P., Frøhlich, R. & Knudsen, B. R. (2022). Topoisomerase 1 inhibits MYC promoter activity by inducing G-quadruplex formation. Nucleic Acids Research, 50(11), 6332-6342. https://doi.org/10.1093/nar/gkac482

Keller, J. G., Mizielinski, K., Petersen, K. V., Stougaard, M., Knudsen, B. R. & Tesauro, C. (2022). Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples. Journal of visualized experiments : JoVE, (190). https://doi.org/10.3791/64484

Josipovic, N., Ebbesen, K. K., Zirkel, A., Danieli-Mackay, A., Dieterich, C., Kurian, L., Hansen, T. B. & Papantonis, A. (2022). circRAB3IP modulates cell proliferation by reorganizing gene expression and mRNA processing in a paracrine manner. RNA (New York, N.Y.), 28(11), 1481-1495. https://doi.org/10.1261/rna.079195.122

Jiang, M., Dai, S., Zheng, Y. C., Li, R. Q., Tan, Y. Y., Pan, G., Møller, I. M., Song, S. Y., Huang, J. Z. & Shu, Q. Y. (2022). An alanine to valine mutation of glutamyl-tRNA reductase enhances 5-aminolevulinic acid synthesis in rice. Theoretical and Applied Genetics, 135(8), 2817-2831. https://doi.org/10.1007/s00122-022-04151-7

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Lisbeth Heilesen

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