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Department of Molecular Biology and Genetics

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Peer-reviewed publications at MBG

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Andersen, C., Grønnemose, A. L., Pedersen, J. N., Nowak, J. S., Christiansen, G., Nielsen, J., Mulder, F. A. A., Otzen, D. E. & Jørgensen, T. J. D. (2021). Lipid Peroxidation Products HNE and ONE Promote and Stabilize Alpha-Synuclein Oligomers by Chemical Modifications. Biochemistry, 60(47), 3644-3658. https://doi.org/10.1021/acs.biochem.1c00478

Larsen, K. E. (Producer) & Heide-Jørgensen, M. P. (Producer). (2021). M.P. (2021) Monodon monoceros cytoglobin mRNA, complete cds. GenBank Accession No. MW280858. Dataset

Fields, B., Moeskjaer, S., Friman, V-P., Andersen, S. U. & Young, J. P. W. (2021). MAUI-seq: Metabarcoding using amplicons with unique molecular identifiers to improve error correction. Molecular Ecology Resources, 21(3), 703-720. https://doi.org/10.1111/1755-0998.13294

Dach, I. & Nissen, P. (2021). Membrane transport | Structure of P-Type adenosine triphosphatases. In Encyclopedia of Biological Chemistry: Third Edition (Vol. 2, pp. 1014-1020). Elsevier. https://doi.org/10.1016/B978-0-12-819460-7.00626-5

Hjortebjerg, R., Bojsen-Møller, K. N., Søeby, M., Oxvig, C., Madsbad, S. & Frystyk, J. (2021). Metabolic improvement after gastric bypass correlates with changes in IGF-regulatory proteins stanniocalcin-2 and IGFBP-4. Metabolism: Clinical and Experimental, 124, [154886]. https://doi.org/10.1016/j.metabol.2021.154886

Hao, D., Wang, X., Wang, X., Thomsen, B., Yang, Y., Lan, X., Huang, Y. & Chen, H. (2021). MicroRNA bta-miR-365-3p inhibits proliferation but promotes differentiation of primary bovine myoblasts by targeting the activin A receptor type I. Journal of Animal Science and Biotechnology, 12(1), [16]. https://doi.org/10.1186/s40104-020-00528-0

Otzen, D. E., Buell, A. K. & Jensen, H. (2021). Microfluidics and the quantification of biomolecular interactions. Current Opinion in Structural Biology, 70, 8-15. https://doi.org/10.1016/j.sbi.2021.02.006

Ascanius, S. R., Hansen, M. S., Ostenfeld, M. & Rasmussen, J. T. (2021). Milk-Derived Extracellular Vesicles Suppress Inflammatory Cytokine Expression and Nuclear Factor-κB Activation in Lipopolysaccharide-Stimulated Macrophages. Dairy - Open Access Journal, 2(2), 165-178. https://doi.org/10.3390/dairy2020015

Quistgaard, E. M. H., Nissen, J. D., Hansen, S. & Nissen, P. (2021). Mind the gap: molecular architecture of the axon initial segment – from fold prediction to a mechanistic model of function? Journal of Molecular Biology, 433(20), [167176]. https://doi.org/10.1016/j.jmb.2021.167176

Larsen, K., Bæk, R., Sahin, C., Kjær, L., Christiansen, G., Nielsen, J., Farajzadeh, L. & Otzen, D. E. (2021). Molecular characteristics of porcine alpha-synuclein splicing variants. Biochimie, 180, 121-133. https://doi.org/10.1016/j.biochi.2020.10.019

Bavnhøj, L., Paulsen, P. A., Flores-Canales, J. C., Schiøtt, B. & Pedersen, B. P. (2021). Molecular mechanism of sugar transport in plants unveiled by structures of glucose/H⁺ symporter STP10. Nature Plants, 7(10), 1409-1419. https://doi.org/10.1038/s41477-021-00992-0

Aliakbari, F., Mohammad-Beigi, H., Abbasi, S., Rezaei-Ghaleh, N., Lermyte, F., Parsafar, S., Becker, S., Tafreshi, A. P., O'Connor, P. B., Collingwood, J. F., Christiansen, G., Sutherland, D. S., Jensen, P. H., Morshedi, D. & Otzen, D. E. (2021). Multiple Protective Roles of Nanoliposome-Incorporated Baicalein against Alpha-Synuclein Aggregates. Advanced Functional Materials, 31(7), [2007765]. https://doi.org/10.1002/adfm.202007765

Nielsen, N. S., Gadeberg, T. A. F., Poulsen, E. T., Harwood, S. L., Weberskov, C. E., Pedersen, J. S., Andersen, G. R. & Enghild, J. J. (2021). Mutation-induced dimerization of transforming growth factor-β-induced protein may drive protein aggregation in granular corneal dystrophy. The Journal of Biological Chemistry, 297(1), [100858]. https://doi.org/10.1016/j.jbc.2021.100858

Li, R. Q., Jiang, M., Huang, J. Z., Møller, I. M. & Shu, Q. Y. (2021). Mutations of the Genomes Uncoupled 4 Gene Cause ROS Accumulation and Repress Expression of Peroxidase Genes in Rice. Frontiers in Plant Science, 12, [682453]. https://doi.org/10.3389/fpls.2021.682453

Zarantonello, A., Pedersen, H., Laursen, N. S. & Andersen, G. R. (2021). Nanobodies provide insight into the molecular mechanisms of the complement cascade and offer new therapeutic strategies. Biomolecules, 11(2), [298]. https://doi.org/10.3390/biom11020298

Rahimi, K., Færch Nielsen, A., Venø, M. T. & Kjems, J. (2021). Nanopore long-read sequencing of circRNAs. Methods, 196, 23-29. https://doi.org/10.1016/j.ymeth.2021.09.010

Rahimi, K., Venø, M. T., Dupont, D. M. & Kjems, J. (2021). Nanopore sequencing of brain-derived full-length circRNAs reveals circRNA-specific exon usage, intron retention and microexons. Nature Communications, 12, [4825]. https://doi.org/10.1038/s41467-021-24975-z

Jendroszek, A. & Kjaergaard, M. (2021). Nanoscale spatial dependence of avidity in an IgG1 antibody. Scientific Reports, 11, [12663]. https://doi.org/10.1038/s41598-021-92280-2

Kawaharada, Y., Sandal, N., Gupta, V., Jin, H., Kawaharada, M., Taniuchi, M., Ruman, H., Nadzieja, M., Andersen, K. R., Schneeberger, K., Stougaard, J. & Andersen, S. U. (2021). Natural variation identifies a Pxy gene controlling vascular organization and formation of nodules and lateral roots in Lotus japonicus. New Phytologist, 230(6), 2459-2473. https://doi.org/10.1111/nph.17356

Dupont Juhl, A., Lund, F. W., Jensen, M. L. V., Szomek, M., Würtz Heegaard, C., Guttmann, P., Werner, S., McNally, J., Schneider, G., Kapishnikov, S. & Wüstner, D. (2021). Niemann Pick C2 protein enables cholesterol transfer from endo-lysosomes to the plasma membrane for efflux by shedding of extracellular vesicles. Chemistry and Physics of Lipids, 235, [105047]. https://doi.org/10.1016/j.chemphyslip.2020.105047

Lin, J., Roswanjaya, Y. P., Kohlen, W., Stougaard, J. & Reid, D. (2021). Nitrate restricts nodule organogenesis through inhibition of cytokinin biosynthesis in Lotus japonicus. Nature Communications, 12, [6544]. https://doi.org/10.1038/s41467-021-26820-9

Taschner, M., Basquin, J., Steigenberger, B., Schäfer, I. B., Soh, Y. M., Basquin, C., Lorentzen, E., Räschle, M., Scheltema, R. A. & Gruber, S. (2021). Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding. EMBO Journal, 40(15), [e107807]. https://doi.org/10.15252/embj.2021107807

Rattan, S. & Kaur, G. (Eds.) (2021). Nutrition, Food and Diet in Ageing and Longevity. Springer. Healthy Ageing and Longevity Vol. 14 https://doi.org/10.1007/978-3-030-83017-5

Rattan, S. & Kaur, G. (2021). Nutrition, food and diet: recapitulation, conclusions and suggestions. In S. Rattan & G. Kaur (Eds.), Nutrition, food and diet in ageing and longevity (pp. 633-640). Springer. Healthy Ageing and Longevity Vol. 14 https://doi.org/10.1007/978-3-030-83017-5_30

Rattan, S. (2021). Nutritional hormetins in ageing and longevity. In S. Rattan & G. Kaur (Eds.), Nutrition, Food and Diet in Ageing and Longevity (pp. 109-122). Springer. Healthy Ageing and Longevity Vol. 14 https://doi.org/10.1007/978-3-030-83017-5_6

Hao, D., Bai, J., Du, J., Wu, X., Thomsen, B., Gao, H., Su, G. & Wang, X. (2021). Overview of metabolomic analysis and the integration with multi-omics for economic traits in cattle. Metabolites, 11(11), [753]. https://doi.org/10.3390/metabo11110753

Talotta, R., Bahrami, S. & Laska, M. J. (2021). POS0349 SEQUENCE COMPLEMENTARITY BETWEEN SARS-CoV-2 GENOME AND HUMAN NONCODING RNAS ASSOCIATED WITH IMMUNOLOGICAL DISORDERS: AN IN SILICO PIVOTAL STUDY. Annals of the Rheumatic Diseases, 80, 404-405.

Walther, R., Monge, P., Pedersen, A., Benderoth, A., Pedersen, J., Farzadfard, A., Mandrup, O., Howard, K., Otzen, D. & Zelikin, A. N. (2021). Per-glycosylation of the Surface-Accessible Lysines: One-Pot Aqueous Route to Stabilized Proteins with Native Activity. ChemBioChem, 22(14), 2478-2485. https://doi.org/10.1002/cbic.202100228

Dichmann, L. P., Bregnhøj, M., Liu, H., Westberg, M., Poulsen, T., Etzerodt, M. & Ogilby, P. R. (2021). Photophysics of a Protein-Bound Derivative of Malachite Green that Sensitizes the Production of Singlet Oxygen. Photochemical & Photobiological Sciences, 20(3), 435-449. https://doi.org/10.1007/s43630-021-00032-y

Gerdes, K., Bærentsen, R. & Brodersen, D. E. (2021). Phylogeny Reveals Novel HipA-Homologous Kinase Families and Toxin-Antitoxin Gene Organizations. mBio, 12(3), e0105821. https://doi.org/10.1128/mBio.01058-21

Møller, I. M., Rasmusson, A. G. & Van Aken, O. (2021). Plant mitochondria – past, present and future. Plant Journal, 108(4), 912-959. https://doi.org/10.1111/tpj.15495

Elfarrash, S., Jensen, N. M., Ferreira, N., Schmidt, S. I., Gregersen, E., Vestergaard, M. V., Nabavi, S., Meyer, M. & Jensen, P. H. (2021). Polo-like kinase 2 inhibition reduces serine-129 phosphorylation of physiological nuclear alpha-synuclein but not of the aggregated alpha-synuclein. PLOS ONE, 16(10), [e0252635]. https://doi.org/10.1371/journal.pone.0252635

Madej, M., Nowakowska, Z., Ksiazek, M., Lasica, A. M., Mizgalska, D., Nowak, M., Jacula, A., Bzowska, M., Scavenius, C., Enghild, J. J., Aduse-Opoku, J., Curtis, M. A., Gomis-Rüth, F. X. & Potempa, J. (2021). PorZ, an Essential Component of the Type IX Secretion System of Porphyromonas gingivalis, Delivers Anionic Lipopolysaccharide to the PorU Sortase for Transpeptidase Processing of T9SS Cargo Proteins. mBio, 12(1), [e02262-20]. https://doi.org/10.1128/mBio.02262-20

Kjaergaard, M., Glavina, J. & Chemes, L. B. (2021). Predicting the effect of disordered linkers on effective concentrations and avidity with the “C_eff calculator” app. In M. Merkx (Ed.), Linkers in Biomacromolecules (pp. 145-171). Academic Press. Methods in Enzymology Vol. 647 https://doi.org/10.1016/bs.mie.2020.09.012

Rohde, P. D., Kristensen, T. N., Sarup, P., Muñoz, J. & Malmendal, A. (2021). Prediction of complex phenotypes using the Drosophila melanogaster metabolome. Heredity, 126(5), 717-732. https://doi.org/10.1038/s41437-021-00404-1

Sekmen Cetinel, A. H., Yalcinkaya, T., Akyol, T. Y., Gokce, A. & Turkan, I. (2021). Pretreatment of seeds with hydrogen peroxide improves deep-sowing tolerance of wheat seedlings. Plant Physiology and Biochemistry, 167, 321-336. https://doi.org/10.1016/j.plaphy.2021.08.016

Zhang, B. B. B., Kan, R. L. D., Woo, T. F., Chan, C. C. H., Fong, K. N. K. & Kranz, G. S. (2021). Probing the effects of single-session iTBS on associative memory: A prospective, randomized, controlled cross-over study. Brain Stimulation, 14(4), 924-926. https://doi.org/10.1016/j.brs.2021.05.017

Iparraguirre, L., Alberro, A., Hansen, T. B., Castillo-Triviño, T., Muñoz-Culla, M. & Otaegui, D. (2021). Profiling of plasma extracellular vesicle transcriptome reveals that circrnas are prevalent and differ between multiple sclerosis patients and healthy controls. Biomedicines, 9(12), [1850]. https://doi.org/10.3390/biomedicines9121850

Mandrup, O. A., Ong, S. C., Lykkemark, S., Dinesen, A., Rudnik-Jansen, I., Dagnæs-Hansen, N. F., Andersen, J. T., Alvarez-Vallina, L. & Howard, K. A. (2021). Programmable half-life and anti-tumour effects of bispecific T-cell engager-albumin fusions with tuned FcRn affinity. Communications Biology, 4(1), [310]. https://doi.org/10.1038/s42003-021-01790-2

Pedersen, D. V., Pedersen, M. N., Mazarakis, S. M. M., Wang, Y., Lindorff-Larsen, K., Arleth, L. & Andersen, G. R. (2021). Properdin oligomers adopt rigid extended conformations supporting function. eLife, 10, [e63356]. https://doi.org/10.7554/eLife.63356

Ling, M. L., Marshall, I. P. G., Rosati, B., Schreiber, L., Boesen, T., Finster, K. & Šantl-Temkiv, T. (2021). Properties relevant to atmospheric dispersal of the ice-nucleation active Pseudomonas syringae strain R10.79 isolated from rain water. Aerobiologia, 37, 225-241. https://doi.org/10.1007/s10453-020-09682-4

LifeTime Community Working Groups (2021). Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine (Nature, (2020), 587, 7834, (377-386), 10.1038/s41586-020-2715-9). Nature, 592(7852), E8. https://doi.org/10.1038/s41586-021-03287-8

Kramer, L. M., Wolc, A., Esfandyari, H., Thekkoot, D. M., Zhang, C., Kemp, R. A., Plastow, G. & Dekkers, J. C. M. (2021). Purebred-crossbred genetic parameters for reproductive traits in swine. Journal of Animal Science, 99(10). https://doi.org/10.1093/jas/skab270

Zarantonello, A., Mortensen, S., Laursen, N. S. & Andersen, G. R. (2021). Purification of Human Complement Component C4 and Sample Preparation for Structural Biology Applications. In Methods in Molecular Biology (Vol. 2227, pp. 249-264). Humana Press. Methods in Molecular Biology Vol. 2227 https://doi.org/10.1007/978-1-0716-1016-9_22

Dupont Juhl, A., Würtz Heegaard, C., Werner, S., Schneider, G., Covey, D. F. & Wüstner, D. (2021). Quantitative imaging of membrane contact sites for sterol transfer between endo‑lysosomes and mitochondria in living cells. Scientific Reports, 11, [8927 ]. https://doi.org/10.1038/s41598-021-87876-7

Geary, C., Grossi, G., McRae, E. K. S., Rothemund, P. W. K. & Andersen, E. S. (2021). RNA origami design tools enable cotranscriptional folding of kilobase-sized nanoscaffolds. Nature Chemistry, 13(6), 549-558. https://doi.org/10.1038/s41557-021-00679-1

Khazaei, H., O'Sullivan, D. M., Stoddard, F. L., Adhikari, K. N., Paull, J. G., Schulman, A. H., Andersen, S. U. & Vandenberg, A. (2021). Recent advances in faba bean genetic and genomic tools for crop improvement. Legume Science, 3(3), [e75]. https://doi.org/10.1002/leg3.75

Cavassim, M. I. A., Andersen, S. U., Bataillon, T. & Schierup, M. H. (2021). Recombination facilitates adaptive evolution in rhizobial soil bacteria. Molecular Biology and Evolution, 38(12). https://doi.org/10.1093/molbev/msab247

Christensen, M., Petersen, J. L., Sivanandam, P., Kronborg, C. S., Knudsen, U. B. & Martensen, P. M. (2021). Reduction of serum-induced endothelial STAT3(Y705) activation is associated with preeclampsia. Pregnancy Hypertension, 25, 103-109. https://doi.org/10.1016/j.preghy.2021.05.012

Hao, D., Wang, X., Wang, X., Thomsen, B., Qu, K., Lan, X., Huang, Y., Lei, C., Huang, B. & Chen, H. (2021). Resveratrol stimulates microRNA expression during differentiation of bovine primary myoblasts. Food and Nutrition Research, 65, [5453]. https://doi.org/10.29219/fnr.v65.5453

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