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Hoffmann, N., Mittnacht, U., Hartmann, H., Baumer, Y., Kjems, J., Oberhoffner, S. & Schlosshauer, B. (2011). Neuronal and glial responses to siRNA-coated nerve guide implants in vitro. Neuroscience Letters, 494(1), 14-8. https://doi.org/10.1016/j.neulet.2011.02.043

Sükösd, Z., Knudsen, B., Værum, M., Kjems, J. & Andersen, E. S. (2011). Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars. BMC Bioinformatics, 12(103). https://doi.org/10.1186/1471-2105-12-103

Höfer, N., Aragão, D., Lyons, J. A. & Caffrey, M. (2011). Membrane protein crystallization in lipidic mesophases. Hosting lipid effects on the crystallization and structure of a transmembrane peptide. Crystal Growth and Design, 11(4), 1182-1192. https://doi.org/10.1021/cg101384p

Jeppesen, D. K., Bohr, V. & Stevnsner, T. V. (2011). DNA repair deficiency in neurodegeneration. Progress in Neurobiology, 30(94), 166-200.

Lykke-Andersen, S., Mapendano, C. K. & Jensen, T. H. (2011). An ending is a new beginning: Transcription termination supports re-initiation. Cell Cycle, 10(6), 863-865. https://doi.org/10.4161/cc.10.6.14931

Wiklund, E. D., Bramsen, J. B., Hulf, T., Andersen, L. D., Ramanathan, R., Hansen, T. B., Villadsen, S. B., Gao, S., Ostenfeld, M. S., Borre, M., Peter, M. E., Ørntoft, T. F., Kjems, J. & Clark, S. J. (2011). Coordinated epigenetic repression of the miR-200 family and miR-205 in invasive bladder cancer. International Journal of Cancer, 128(6), 1327-1334. https://doi.org/10.1002/ijc.25461

Laursen, L. S., Chan, C. W. & ffrench-Constant, C. (2011). Translation of myelin basic protein mRNA in oligodendrocytes is regulated by integrin activation and hnRNP-K. Journal of Cell Biology, 192(5), 797-811. https://doi.org/10.1083/jcb.201007014

Lin, Z., Jiang, L., Yuan, C., Jensen, J. K., Zhang, X., Luo, Z., Furie, B. C., Furie, B., Andreasen, P. A. & Huang, M. (2011). Structural basis for recognition of urokinase-type plasminogen activator by plasminogen activator inhibitor-1. Journal of Biological Chemistry, 286(9), 7027-32. https://doi.org/10.1074/jbc.M110.204537

Krusell, L., Sato, N., Fukuhara, I., Koch, B. E. V., Grossmann, C., Okamoto, S., Oka-Kira, E., Otsubo, Y., Aubert, G., Nakagawa, T., Sato, S., Tabata, S., Duc, G., Parniske, M., Wang, T. L., Kawaguchi, M. & Stougaard, J. (2011). The Clavata2 genes of pea and Lotus japonicus affect autoregulation of nodulation. Plant Journal, 65(6), 861-871. https://doi.org/10.1111/j.1365-313X.2010.04474.x

Samsel, P. A., Kisiswa, L., Erichsen, J. T., Cross, S. D. & Morgan, J. E. (2011). A novel method for the induction of experimental glaucoma using magnetic microspheres. Investigative Ophthalmology & Visual Science, 52(3), 1671-1675. https://doi.org/10.1167/iovs.09-3921

Danielsen, J. M. R., Sylvestersen, K. B., Bekker-Jensen, S., Szklarczyk, D., Poulsen, J. W., Horn, H., Jensen, L. J., Mailand, N. & Nielsen, M. L. (2011). Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. Molecular and Cellular Proteomics, 10(3). https://doi.org/10.1074/mcp.M110.003590

Giehm, L., Svergun, D. I., Otzen, D. E. & Vestergaard, B. (2011). Low-resolution structure of a vesicle disrupting α-synuclein oligomer that accumulates during fibrillation. Proceedings of the National Academy of Sciences (PNAS), 108(8), 3246-3251. https://doi.org/10.1073/pnas.1013225108

Runager, K., Basaiawmoit, R. V., Deva, T., Andreasen, M., Valnickova, Z., Sørensen, C. S., Karring, H., Thøgersen, I. B., Christiansen, G., Underhaug, J., Kristensen, T., Nielsen, N. C., Klintworth, G. K., Otzen, D. E. & Enghild, J. J. (2011). Human Phenotypically Distinct TGFBI Corneal Dystrophies Are Linked to the Stability of the Fourth FAS1 Domain of TGFBIp. Journal of Biological Chemistry, 286(7), 4951-8. https://doi.org/10.1074/jbc.M110.181099

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2011). Using Inverted Indices for Accelerating LINGO Calculations. Journal of Chemical Information and Modeling, 51(3), 597-600. https://doi.org/10.1021/ci100437e

Marín-Vicente, C., Guerrero-Valero, M., Nielsen, M. L., Savitski, M. M., Gómez-Fernández, J. C., Zubarev, R. A. & Corbalán-García, S. (2011). ATP enhances neuronal differentiation of PC12 cells by activating PKCα interactions with cytoskeletal proteins. Journal of proteome Research, 10(2), 529-540. https://doi.org/10.1021/pr100742r

Laursen, N. S., Andersen, K. R., Braren, I., Spilllner, E., Sottrup-Jensen, L. & Andersen, G. R. (2011). Substrate recognition by complement convertases revealed in the C5-cobra venom factor complex. EMBO Journal, 30(3), 606-616.

Madsen, E. B., Antolín-Llovera, M., Grossmann, C., Ye, J., Vieweg, S., Broghammer, A., Krusell, L., Radutoiu, S., Jensen, O. N., Stougaard, J. & Parniske, M. (2011). Autophosphorylation is essential for the in vivo function of the Lotus japonicus Nod factor receptor 1 and receptor-mediated signalling in cooperation with Nod factor receptor 5. Plant Journal, 65(3), 404-17. https://doi.org/10.1111/j.1365-313X.2010.04431.x

Kjærgaard, M., Brander, S. & Poulsen, F. M. (2011). Random coil chemical shift for intrinsically disordered proteins: effects of temperature and pH. Journal of Biomolecular N M R, 49(2), 139-49. https://doi.org/10.1007/s10858-011-9472-x

Cervantes, C. F., Bergqvist, S., Kjærgaard, M., Kroon, G., Sue, S.-C., Dyson, H. J. & Komives, E. A. (2011). The RelA nuclear localization signal folds upon binding to IκBα. Journal of Molecular Biology, 405(3), 754-64. https://doi.org/10.1016/j.jmb.2010.10.055

Jahn, K., Olsen, E. M., Nielsen, M. M., Tørring, T., Mohammadzadegan, R., Andersen, E. S., Gothelf, K. V. & Kjems, J. (2011). Site-Specific Chemical Labeling of Long RNA Molecules. Bioconjugate Chemistry, 22(1), 95-100. https://doi.org/10.1021/bc100422k

Rosenbaum, D. M., Zhang, C., Lyons, J. A., Holl, R., Aragao, D., Arlow, D. H., Rasmussen, S. G. F., Choi, H. J., Devree, B. T., Sunahara, R. K., Chae, P. S., Gellman, S. H., Dror, R. O., Shaw, D. E., Weis, W. I., Caffrey, M., Gmeiner, P. & Kobilka, B. K. (2011). Structure and function of an irreversible agonist-β₂ adrenoceptor complex. Nature, 469(7329), 236-242. https://doi.org/10.1038/nature09665

Kristiansen, H., Gad, H. H., Larsen, S. E., Despres, P. & Hartmann, R. (2011). The oligoadenylate synthetase family: an ancient protein family with multiple antiviral activities. Journal of Interferon & Cytokine Research, 31(1), 41-47. https://doi.org/10.1089/jir.2010.0107

Østergaard, S. D. & Foldager, L. (2011). The association between physical illness and major depressive episode in general practice. Acta Psychiatrica Scandinavica, 123(4), 290-296. https://doi.org/10.1111/j.1600-0447.2010.01668.x

Blaise, M. & Thirup, S. S. (2011). Crystallization of Escherichia coli maltoporin in the trigonal space group R3. Acta Crystallographica Section F:Structural Biology Communications, 67.

Martins, H. & Villesen, P. (2011). Improved integration time estimation of endogenous retroviruses with phylogenetic data. PLoS One, 6(3), e14745. https://doi.org/10.1371/journal.pone.0014745

Otzen, D. E. (2011). Mapping the folding pathway of the transmembrane protein DsbB by protein engineering. Protein Engineering, Design and Selection, 24(1-2), 139-149. https://doi.org/10.1093/protein/gzq079

De Mita, S., Chantret, N., Loridon, K., Ronfort, J. & Bataillon, T. (2011). Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula. BMC Evolutionary Biology, 11(1), 229-241. https://doi.org/10.1186/1471-2148-11-229

Grivet, D., Sebastiani, F., Alía, R., Bataillon, T., Torre, S., Zabal-Aguirre, M., Vendramin, G. G. & González-Martínez, S. C. (2011). Molecular footprints of local adaptation in two Mediterranean conifers. Molecular Biology and Evolution, 28(1), 101-16. https://doi.org/10.1093/molbev/msq190

Lützelberger, M. & Kjems, J. (2011). S1 nuclease analysis of alternatively spliced mRNA. Methods in Molecular Biology, 703, 161-71. https://doi.org/10.1007/978-1-59745-248-9_11

Kadarmideen, H. N., Watson-Haigh, N. S. & Andronicos, N. M. (2011). Systems biology of ovine intestinal parasite resistance: Disease gene modules and biomarkers. Molecular BioSystems, 7(1), 235-246. https://doi.org/10.1039/c0mb00190b

Nexø, B. A., Christensen, T., Frederiksen, J., Møller-Larsen, A., Oturai, A. B., Villesen, P., Hansen, B., Nissen, K. K., Laska, M. J., Petersen, T. S., Bonnesen, S., Hedemand, A., Wu, T., Wang, X., Zhang, X., Brudek, T., Maric, R., Søndergaard, H., Sellebjerg, F. T. ... Pedersen, F. S. (2011). The Etiology of Multiple Sclerosis: Genetic Evidence for the Involvement of the Human Endogenous Retrovirus HERV-Fc1. PLoS One, 6(2), e16652. https://doi.org/10.1371/journal.pone.0016652

Lykke-Andersen, S., Tomecki, R., Jensen, T. H. & Dziembowski, A. (2011). The eukaryotic RNA exosome: Same scaffold but variable catalytic subunits. RNA Biology, 8(1).

Debnath, D. K., Basaiawmoit, R. V., Nielsen, K. L. & Otzen, D. E. (2011). The role of membrane properties in Mistic folding and dimerisation. Protein Engineering, Design and Selection, 24(1-2), 89-97. https://doi.org/10.1093/protein/gzq095

Hofmeister, M. V., Füchtbauer, E.-M., Fenton, R. A. & Praetorius, J. (2011). The TRPV5 Promoter as a Tool for Generation of Transgenic Mouse Models. Advances in Experimental Medicine and Biology, 704, 277-86. https://doi.org/10.1007/978-94-007-0265-3_15

Morth, J. P., Pedersen, B. P., Buch-Pedersen, M. J., Andersen, J. P., Vilsen, B., Palmgren, M. G. & Nissen, P. (2011). A structural overview of the plasma membrane Na+,K+-ATPase and H+-ATPase ion pumps. Nature Reviews. Molecular Cell Biology, 12, 60-70.

Djernes, J. K., Gulmann, N. C., Foldager, L., Olesen, F. & Munk-Jørgensen, P. (2011). 13 year follow up of morbidity, mortality and use of health services among elderly depressed patients and general elderly populations. The Australian & New Zealand Journal of Psychiatry, 45(8), 654-662. https://doi.org/10.3109/00048674.2011.589368

Fedosov, S., Ruetz, M., Gruber, K., Fedosova, N. & Kräutler, B. (2011). A Blue Corrinoid from Partial Degradation of Vitamin B12 in Aqueous Bicarbonate: Spectra, Structure, and Interaction with Proteins of B12 Transport. Biochemistry, 50, 8090−8101.

Thomsen, R. & Nielsen, A. L. (2011). A Boyden chamber-based method for characterization of astrocyte protrusion localized RNA and protein. Glia, 59(11), 1782-92. https://doi.org/10.1002/glia.21223

Zhang, Z., Olsen, E. M., Kryger, M., Voigt, N. V., Tørring, T., Gültekin, E., Nielsen, M., MohammadZadegan, R., Andersen, E. S., Nielsen, M. M., Kjems, J., Birkedal, V. & Gothelf, K. V. (2011). A DNA tile actuator with eleven discrete states. Angewandte Chemie International Edition, 50(17), 3983-7. https://doi.org/10.1002/anie.201007642

Lindblad-Toh, K., Garber, M., Zuk, O., Lin, M. F., Parker, B. J., Washietl, S., Kheradpour, P., Ernst, J., Jordan, G., Mauceli, E., Ward, L. D., Lowe, C. B., Holloway, A. K., Clamp, M., Gnerre, S., Alföldi, J., Beal, K., Chang, J., Clawson, H. ... Broad Institute Sequencing Platform and Whole Genome Assembly Team (2011). A high-resolution map of human evolutionary constraint using 29 mammals. Nature, 478(7370), 476-82. https://doi.org/10.1038/nature10530

Fedosov, S., Brask, J. & Xu, X. (2011). Analysis of biodiesel conversion using thin layer chromatography and nonlinear calibration curves. Journal of Chromatography A, 1218(19), 2785-2792. https://doi.org/10.1016/j.chroma.2011.01.067

Lamy, P., Grove, J. & Wiuf, C. (2011). A review of software for microarray genotyping. Human Genomics (Online), 5(4), 304-9.

Giehm, L., Lorenzen, N. & Otzen, D. (2011). Assays for alpha-synuclein aggregation. Methods, 53(3), 295-305.

Khavinson, V. & Rattan, S. (2011). Biogerontological research in Europe: special issue. Biogerontology, 12(1), 1.

Rattan, S. (2011). Biological principles of aging and approaches for intervention. I A. Olgun (red.), The field of biological aging: past, present and future (s. 1-15). Transworld Research Network. http://www.trnres.com/ebook/uploads/olguncontent/T_13256689461%20Olgun.pdf

Bramsen, J. B. & Kjems, J. (2011). Chemical modification of small interfering RNA. Methods in Molecular Biology, 721(1), 77-103. https://doi.org/10.1007/978-1-61779-037-9_5

Locke, D. P., Hillier, L. W., Warren, W. C., Yang, S.-P., Wang, Z., Chinwalla, A. T., Minx, P., Mitreva, M., Cook, L., Delehaunty, K. D., Fronick, C., Schmidt, H., Fulton, L. A., Fulton, R. S., Nelson, J. O., Magrini, V., Pohl, C., Graves, T. A., Markovic, C. ... de Jong, P. J. (2011). Comparative and demographic analysis of orang-utan genomes. Nature, 469, 529-533. https://doi.org/10.1038/nature09687

Frederiksen, P. D., Andersen, K. K., Hammershøj, M., Poulsen, H. D., Sørensen, J., Bakman, M., Qvist, K. B. & Larsen, L. B. (2011). Composition and effect of blending of noncoagulating, poorly coagulating, and well-coagulating bovine milk from individual Danish Holstein cows. Journal of Dairy Science, 94(10), 4787-4799. https://doi.org/10.3168/jds.2011-4343

Karring, H., Runager, K., Thøgersen, I. B., Klintworth, G. K., Højrup, P. & Enghild, J. J. (2011). Composition and proteolytic processing of corneal deposits associated with mutations in the TGFBI gene. Experimental Eye Research. https://doi.org/10.1016/j.exer.2011.11.014

Grohe, B., Chan, B. P. H., Sørensen, E. S., Lajoie, G., Goldberg, H. A. & Hunter, G. K. (2011). Cooperation of phosphates and carboxylates controls calcium oxalate crystallization in ultrafiltered urine. Urological Research, 39, 327-338.

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Helene Eriksen