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Dueholm, M. S., Nielsen, S. B., Hein, K. L., Nissen, P., Chapman, M., Christiansen, G., Nielsen, P. H. & Otzen, D. E. (2011). Fibrillation of the major curli subunit CsgA under a wide range of conditions implies a robust design of aggregation. Biochemistry, 50(39), 8281-90. https://doi.org/10.1021/bi200967c

Jochimsen, B., Lolle, S., McSorley, F., Nabi, M., Stougaard, J., Zechel, D. & Hove-Jensen, B. (2011). Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorous lyase pathway. Proceedings of the National Academy of Sciences (PNAS), 108(28), 11393-8.

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Simonsen, M., Thomsen, R., Christensen, M. H. & Pedersen, C. N. S. (2011). GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution. I GECCO'11 Proceedings of the 13th annual conference on Genetic and evolutionary computation (s. 1803-1810). Association for Computing Machinery. https://doi.org/10.1145/2001576.2001818

Dosal, R. G., Horan, K. A., Rahbek, S. H., Ichijo, H., Chen, Z. J., Mieyal, J. J., Hartmann, R. & Paludan, S. R. (2011). HSV infection induces production of ROS, which potentiate signaling from pattern recognition receptors: role for S-glutathionylation of TRAF3 and 6. PLoS Pathogens, 7(9), e1002250. https://doi.org/10.1371/journal.ppat.1002250

Poulsen, J. B., Andersen, K. R., Kjær, K. H., Durand, F., Faou, P., Vestergaard, A. L., Talbo, G. H., Hoogenraad, N., Brodersen, D. E., Justesen, J. & Martensen, P. M. (2011). Human 2'-phosphodiesterase localizes to the mitochondrial matrix with a putative function in mitochondrial RNA turnover. Nucleic Acids Research, 39(9), 3754-70. https://doi.org/10.1093/nar/gkq1282

Sonne-Schmidt, C. S., Sanggaard, K. W., Nikolajsen, C. L., Bak, S., Valnickova, Z., Thøgersen, I. B., Jensen, O. N., Højrup, P. & Enghild, J. J. (2011). Human inter-α-inhibitor is a substrate for factor XIIIa and tissue transglutaminase. BBA General Subjects, 1814(12), 1624-30. https://doi.org/10.1016/j.bbapap.2011.08.017

Hussey, G., Chaudhury, A., Dawson, A., Lindner, D., Knudsen, C. R., Wilce, M., Merrick, W. & Howe, P. (2011). Idenfitication of an mRNP complex regulating tumorigenesis at the translational elongation step. Molecular Cell, 41(4), 419.

Sulem, P., Gudbjartsson, D. F., Walters, G. B., Helgadottir, H. T., Helgason, A., Gudjonsson, S. A., Zanon, C., Besenbacher, S., Bjornsdottir, G., Magnusson, O. T., Magnusson, G., Hjartarson, E., Saemundsdottir, J., Gylfason, A., Jonasdottir, A., Holm, H., Karason, A., Rafnar, T., Stefansson, H. ... Stefansson, K. (2011). Identification of low-frequency variants associated with gout and serum uric acid levels. Nature Genetics, 43(11), 1127-30. https://doi.org/10.1038/ng.972

Hobolth, A., Dutheil, J., Hawks, J., Schierup, M. H. & Mailund, T. (2011). Incomplete lineage sorting patterns among human, chimpanzee and orangutan suggest recent orangutan speciation and widespread selection. Genome Research, 21(3), 349-356. https://doi.org/10.1101/gr.114751.110

Simonsen, M., Mailund, T. & Pedersen, C. N. S. (2011). Inference of Large Phylogenies Using Neighbour-Joining. Biomedical Engineering Systems and Technologies, 127(5), 334-344. https://doi.org/10.1007/978-3-642-18472-7_26

Kantyka, T., Plaza, K., Koziel, J., Florczyk, D., Stennicke, H. R., Thøgersen, I., Enghild, J. J., Silverman, G. A., Pak, S. C. & Potempa, J. (2011). Inhibition of Staphylococcus aureus cysteine proteases by human serpin potentially limits staphylococcal virulence. Journal of Applied Biological Chemistry, 392(5), 483-9. https://doi.org/10.1515/BC.2011.044

Lubas, M. S., Christensen, M. S., Kristiansen, M. S., Domanski, M., Falkenby, L. G., Lykke-Andersen, S., Andersen, J. S., Dziembowski, A. & Jensen, T. H. (2011). Interaction Profiling Identifies the Human Nuclear Exosome Targeting Complex. Molecular Cell.

Lin, M. F., Kheradpour, P., Washietl, S., Parker, B. J., Pedersen, J. S. & Kellis, M. (2011). Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes. Genome Research, 21(11), 1916-28. https://doi.org/10.1101/gr.108753.110

Bertelsen, K., Vad, B., Nielsen, E. H. T., Hansen, S. K., Skrydstrup, T., Otzen, D., Vosegaard, T. & Nielsen, N. C. (2011). Long-term-stable ether-lipid vs conventional ester-lipid bicelles in oriented solid-state NMR: altered structural information in studies of antimicrobial peptides. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 115(8), 1767-1774. https://doi.org/10.1021/jp110866g

Macchi, F., Hoffmann, S. V., Carlsen, M., Vad, B. S., Imparato, A., Rischel, C. & Otzen, D. (2011). Mechanical stress affects glucagon fibrillation kinetics and fibril structure. Langmuir, 27(20), 12539–12549. https://doi.org/10.1021/la202125c

Malet, H. & Lorentzen, E. (2011). Mechanisms of RNA recruitment by the exosome. RNA Biology, 8(3), 398-403.

Juul, S., Ho, Y.-P., Stougaard, M., Koch, J., Andersen, F. F., Leong, K. W. & Knudsen, B. R. (2011). Microfluidics-mediated isothermal detection of enzyme activity at the single molecule level. Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2011, 3258-3261. https://doi.org/10.1109/IEMBS.2011.6090885

Cvitanich, C., Przybyłowicz, W. J., Mesjasz-Przybyłowicz, J., Blair, M. W., Astudillo, C., Orlowska, E. Z., Jurkiewicz, A. M., Jensen, E. Ø. & Stougaard, J. (2011). Micro-PIXE investigation of bean seeds to assist micronutrient biofortification. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms.

Rasmusson, A. G. & Møller, I. M. (2011). Mitochondrial Electron Transport and Plant Stress. I F. Kempken (red.), Plant Mitochondria (s. 357-381). Springer. https://doi.org/10.1007/978-0-387-89781-3_14

Lie, M. A., Thomsen, R., Pedersen, C. N. S., Schiøtt, B. & Christensen, M. H. (2011). Molecular Docking with Ligand Attached Water Molecules. Journal of Chemical Information and Modeling, 51(4), 909-917. https://doi.org/10.1021/ci100510m

Rafnar, T., Gudbjartsson, D. F., Sulem, P., Jonasdottir, A., Sigurdsson, A., Jonasdottir, A., Besenbacher, S., Lundin, P., Stacey, S. N., Gudmundsson, J., Magnusson, O. T., le Roux, L., Orlygsdottir, G., Helgadottir, H. T., Johannsdottir, H., Gylfason, A., Tryggvadottir, L., Jonasson, J. G., de Juan, A. ... Stefansson, K. (2011). Mutations in BRIP1 confer high risk of ovarian cancer. Nature Genetics, 43(11), 1104-7. https://doi.org/10.1038/ng.955

Parker, B. J., Moltke, I., Roth, A. A. E., Washietl, S., Wen, J., Kellis, M., Breaker, R. & Pedersen, J. S. (2011). New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes. Genome Research, 21(11), 1929-43. https://doi.org/10.1101/gr.112516.110

Vestergaard, A. L., Thorup, K., Knudsen, U. B., Munk, T., Rosbach, H., Poulsen, J. B., Guldberg, P. & Martensen, P. M. (2011). Oncogenic events associated with endometrial and ovarian cancers are rare in endometriosis. Molecular Human Reproduction, 17(4), 243-254. https://doi.org/10.1093/molehr/gar049

Roy, A., D'Annessa, I., Nielsen, C. J. F., Tordrup, D. P., Laursen, R. R., Andersen, F. F., Desideri, A. & Knudsen, B. R. (2011). Peptide Inhibition of Topoisomerase IB from Plasmodium falciparum. Molecular Biology International, 854626. https://doi.org/10.4061/2011/854626

Brinkmann, C. R., Thiel, S., Larsen, M. K., Petersen, T. E., Jensenius, J. C. & Heegaard, C. W. (2011). Preparation and comparison of cytotoxic complexes formed between oleic acid and either bovine or human (alpha)-lactalbumin. Journal of Dairy Science, 94(5), 2159-2170.

Brinkmann, C. R., Thiel, S., Larsen, M. K., Petersen, T. E., Jensenius, J. C. & Heegaard, C. W. (2011). Preparation and comparison of cytotoxic complexes formed between oleic acid and either bovine or human α-lactalbumin. Indian Journal of Dairy Science, 94(5), 2159-2170. https://doi.org/10.3168/jds.2010-3622

Otzen, D. (2011). Protein-surfactant interactions a tale of many states. BBA General Subjects, 1814(5), 562-91. https://doi.org/10.1016/j.bbapap.2011.03.003

Simonsen, M. & Pedersen, C. N. S. (2011). Rapid Computation of Distance Estimators from Nucleotide and Amino Acid Alignments. I Proceedings of the 26th Annual ACM Symposium on Applied Computing Association for Computing Machinery.

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Desbrosses, G. J. & Stougaard, J. (2011). Root nodulation: a paradigm for how plant-microbe symbiosis influences host developmental pathways. Cell Host & Microbe, 10(4), 348-58. https://doi.org/10.1016/j.chom.2011.09.005

Basaiawmoit, R. V., Oliveira, C. L. P., Runager, K., Sørensen, C. S., Behrens, M. A., Jonsson, B.-H., Kristensen, T., Klintworth, G. K., Enghild, J. J., Pedersen, J. S. & Otzen, D. E. (2011). SAXS models of TGFBIp reveal a trimeric structure and show that the overall shape is not affected by the Arg124His mutation. Journal of Molecular Biology, 408(3), 503-513. https://doi.org/10.1016/j.jmb.2011.02.052

Weber, M., Schneider, D., Prodöhl, A., Dreher, C., Becker, C., Underhaug, J., Svane, A. S. P., Malmendal, A., Nielsen, N. C. & Otzen, D. (2011). SDS-facilitated in vitro formation of a transmembrane B-type cytochrome is mediated by changes in local pH. Journal of Molecular Biology, 407(4), 594-606. https://doi.org/10.1016/j.jmb.2011.02.005

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Wang, J., Jensen, U. B., Jensen, G. V., Shipovskov, S., Balakrishnan, V. S., Otzen, D., Pedersen, J. S., Besenbacher, F. & Sutherland, D. S. (2011). Soft Interactions at Nanoparticles Alter Protein Function and Conformation in a Size Dependent Manner. Nano Letters, 11(11), 4985-4991. https://doi.org/10.1021/nl202940k

Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K.-P. ... Willerslev, E. (2011). Species-specific responses of Late Quaternary megafauna to climate and humans. Nature, 479(7373), 359-64. https://doi.org/10.1038/nature10574

Nielsen, K. H., Behrens, M. A., He, Y., Oliveira, C. L. P. D., Sottrup-Jensen, L., Hoffmann, S. V., Pedersen, J. S. & Andersen, G. R. (2011). Synergistic activation of eIF4A by eIF4B and eIF4G. Nucleic Acids Research, 39(7), 2678-2689. https://doi.org/10.1093/nar/gkq1206

Malagon, F. & Jensen, T. H. (2011). T-body formation precedes virus-like particle maturation in S. cerevisiae. RNA Biology, 8(2), 184-189. https://doi.org/10.4161/rna.8.2.14822

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