Książek, M., Goulas, T., Mizgalska, D., Rodríguez-Banqueri, A., Eckhard, U., Veillard, F., Waligórska, I., Benedyk-Machaczka, M., Sochaj-Gregorczyk, A. M., Madej, M.
, Thøgersen, I. B., Enghild, J. J., Cuppari, A., Arolas, J. L., de Diego, I., López-Pelegrín, M., Garcia-Ferrer, I., Guevara, T., Dive, V. ... Gomis-Rüth, F. X. (2023).
A unique network of attack, defence and competence on the outer membrane of the periodontitis pathogen Tannerella forsythia.
Chemical Science,
14(4), 869-888.
https://doi.org/10.1039/d2sc04166a
Kofod Petersen, A., Forgie, A. H.
, Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2023).
Automatic tissue removal from 3D dental photoscans. Abstract from Trienial I.O.F.O.S. Congres of Forensic Odonto-Stomatology, Dubrovnik, Croatia.
https://iofos.eu/wp-content/uploads/2023/07/IOFOS.-Book-of-abstracts.pdf
Ung, K. L., Schulz, L., Kleine-Vehn, J.
, Pedersen, B. P. & Hammes, U. Z. (2023).
Auxin transport at the endoplasmic reticulum: Roles and structural similarity of PIN-FORMED and PIN-LIKES.
Journal of Experimental Botany,
74(22), 6893-6903.
https://doi.org/10.1093/jxb/erad192
Catapano, C., Rahm, J. V.
, Omer, M., Teodori, L., Kjems, J., Dietz, M. S. & Heilemann, M. (2023).
Biased activation of the receptor tyrosine kinase HER2.
Cellular and Molecular Life Sciences,
80(6), Article 158.
https://doi.org/10.1007/s00018-023-04806-8
Pedersen, D. V., Gytz, H., Winkler, M. B. L., Zarantonello, A., Baumann, N.
, Hansen, A. G., Thiel, S., Andersen, G. R., Valerius, T.
& Laursen, N. S. (2023).
Bispecific Complement Engagers for Targeted Complement Activation.
Journal of Immunology,
211(3), 403-413.
https://doi.org/10.4049/jimmunol.2200952
Holm, S., Larsen, R. M.
, Holst, C. M., Heide-Jørgensen, M. P., Steffensen, J. F.
, Stevnsner, T. & Larsen, K. (2023).
Bowhead NEIL1: molecular cloning, characterization, and enzymatic properties.
Biochimie,
206, 136-149.
https://doi.org/10.1016/j.biochi.2022.10.014
Taleski, M., Chapman, K., Novák, O., Schmülling, T.
, Frank, M. & Djordjevic, M. A. (2023).
CEP peptide and cytokinin pathways converge on CEPD glutaredoxins to inhibit root growth.
Nature Communications,
14(1), Article 1683.
https://doi.org/10.1038/s41467-023-37282-6
Rasmussen, C. B., Scavenius, C., Thøgersen, I. B., Harwood, S. L., Larsen, Ø., Bjerga, G. E. K.
, Stougaard, P., Enghild, J. J. & Thøgersen, M. S. (2023).
Characterization of a novel cold-adapted intracellular serine protease from the extremophile Planococcus halocryophilus Or1.
Frontiers in Microbiology,
14, Article 1121857.
https://doi.org/10.3389/fmicb.2023.1121857
Berntsson, E., Vosough, F., Noormägi, A., Padari, K., Asplund, F.
, Gielnik, M., Paul, S., Jarvet, J., Tõugu, V., Roos, P. M., Kozak, M., Gräslund, A., Barth, A., Pooga, M., Palumaa, P. & Wärmländer, S. K. T. S. (2023).
Characterization of Uranyl (UO22+) Ion Binding to Amyloid Beta (Aβ) Peptides: Effects on Aβ Structure and Aggregation.
ACS Chemical Neuroscience,
14(15), 2618-2633.
https://doi.org/10.1021/acschemneuro.3c00130
Lucotte, E. A., Guðmundsdóttir, V. B.
, Jensen, J. M., Skov, L., Macià, M. C., Almstrup, K.
, Schierup, M. H., Helgason, A. & Stefansson, K. (2023).
Characterizing the evolution and phenotypic impact of ampliconic Y chromosome regions.
Nature Communications,
14(1), Article 3990.
https://doi.org/10.1038/s41467-023-39644-6
Tolomeo, D., Traversa, D., Venuto, S.
, Ebbesen, K., Garcia Rodriguez, J. L., Tamma, G., Ranieri, M., Simonetti, G., Ghetti, M., Paganelli, M., Visci, G., Liso, A., Kok, K., Muscarella, L. A., Fabrizio, F. P., Frassanito, M. A., Lamanuzzi, A., Saltarella, I., Solimando, A. G. ... Storlazzi, C. T. (2023).
circPVT1 and PVT1/AKT3 show a role in cell proliferation, apoptosis, and tumor subtype-definition in Small Cell Lung Cancer.
Genes, Chromosomes & Cancer,
62(7), 377-391.
https://doi.org/10.1002/gcc.23121
Rasmussen, A. M., Okholm, T. L. H.
, Knudsen, M., Vang, S., Dyrskjøt, L., Hansen, T. B. & Pedersen, J. S. (2023).
Circular stable intronic RNAs possess distinct biological features and are deregulated in bladder cancer.
NAR cancer,
5(3), Article zcad041.
https://doi.org/10.1093/narcan/zcad041
Martin, M., Nilsson, S. C., Eikrem, D., Fromell, K.
, Scavenius, C., Vogt, L. M., Bielecka, E., Potempa, J.
, Enghild, J. J., Nilsson, B., Ekdahl, K. N., Kapetanovic, M. C. & Blom, A. M. (2023).
Citrullination of C1-inhibitor as a mechanism of impaired complement regulation in rheumatoid arthritis.
Frontiers in Immunology,
14, Article 1203506.
https://doi.org/10.3389/fimmu.2023.1203506
Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L. ... Wu, D. D. (2023).
Comparative genomics reveals the hybrid origin of a macaque group.
Science Advances,
9(22), Article eadd3580.
https://doi.org/10.1126/sciadv.add3580
Busato, S., Gordon, M., Chaudhari, M.
, Thorsgaard Jensen, I., Akyol, T. Y., Andersen, S. U. & Williams, C. (2023).
Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies.
Current Opinion in Plant Biology,
71, Article 102326.
https://doi.org/10.1016/j.pbi.2022.102326
Zhang, Y., Plesner, T. J., Ouyang, Y., Zheng, Y.-C., Bouhier, E., Ingemann Berentzen, E., Zhang, M., Zhou, P., Zimmermann , W.
, Andersen, G. R. & Guo, Z. (2023).
Computer-aided discovery of a novel thermophilic laccase for low-density polyethylene degradation.
Journal of Hazardous Materials,
458, Article 131986.
https://doi.org/10.1016/j.jhazmat.2023.131986
Afonine, P. V.
, Gobet, A., Moissonnier, L., Martin, J., Poon, B. K. & Chaptal, V. (2023).
Conformational space exploration of cryo-EM structures by variability refinement.
B B A - Biomembranes,
1865(4), 184133. Article 184133.
https://doi.org/10.1016/j.bbamem.2023.184133
Jensen, R. K., Pihl, R., Gadeberg, T. A. F., Jensen, J. K., Andersen, K. R., Thiel, S., Laursen, N. S. & Andersen, G. R. (2023).
Correction: A potent complement factor C3-specific nanobody inhibiting multiple functions in the alternative pathway of human and murine complement (Journal of Biological Chemistry (2018) 293(17) (6269–6281), (S0021925820397313), (10.1074/jbc.RA117.001179)).
The Journal of Biological Chemistry,
299(2), Article 102951.
https://doi.org/10.1016/j.jbc.2023.102951
Sigurdsson, A. I., Louloudis, I., Banasik, K., Westergaard, D., Winther, O., Lund, O., Ostrowski, S. R.
, Erikstrup, C., Pedersen, O. B. V.
, Nyegaard, M., Brunak, S.
, Vilhjálmsson, B. J., Rasmussen, S. & DBDS Genomic Consortium
(2023).
Deep integrative models for large-scale human genomics.
Nucleic Acids Research,
51(12), E67. Article e67.
https://doi.org/10.1093/nar/gkad373
Lázaro-Gorines, R., Pérez, P., Heras-Murillo, I., Adán-Barrientos, I., Albericio, G., Astorgano, D., Flores, S., Luczkowiak, J., Labiod, N.
, Harwood, S. L., Segura-Tudela, A., Rubio-Pérez, L., Nugraha, Y., Shang, X., Li, Y., Alfonso, C., Adipietro, K. A., Abeyawardhane, D. L., Navarro, R. ... Álvarez-Vallina, L. (2023).
Dendritic Cell-Mediated Cross-Priming by a Bispecific Neutralizing Antibody Boosts Cytotoxic T Cell Responses and Protects Mice against SARS-CoV-2.
Advanced Science,
10(34), Article 2304818.
https://doi.org/10.1002/advs.202304818
Zhang, C., Reid, K., Sands, A. F., Fraimout, A.
, Schierup, M. H. & Merilä, J. (2023).
De Novo Mutation Rates in Sticklebacks.
Molecular Biology and Evolution,
40(9), Article msad192.
https://doi.org/10.1093/molbev/msad192
Als, T. D., Kurki, M. I.
, Grove, J., Voloudakis, G., Therrien, K., Tasanko, E.
, Nielsen, T. T., Naamanka, J., Veerapen, K., Levey, D. F., Bendl, J., Bybjerg-Grauholm, J., Zeng, B.
, Demontis, D., Rosengren, A., Athanasiadis, G., Bækved-Hansen, M.
, Qvist, P., Bragi Walters, G.
... Børglum, A. D. (2023).
Depression pathophysiology, risk prediction of recurrence and comorbid psychiatric disorders using genome-wide analyses.
Nature Medicine,
29(7), 1832-1844.
https://doi.org/10.1038/s41591-023-02352-1
Olesen, H. G., Michailidou, I., Zelek, W. M., Vreijling, J., Ruizendaal, P., de Klein, F., Marquart, J. A., Kuipers, T. B., Mei, H., Zhang, Y., Ahasan, M., Johnson, K. K., Wang, Y., Morgan, B. P., van Dijk, M., Fluiter, K.
, Andersen, G. R. & Baas, F. (2023).
Development, Characterization, and in vivo Validation of a Humanized C6 Monoclonal Antibody that Inhibits the Membrane Attack Complex.
Journal of Innate Immunity,
15(1), 16-36.
https://doi.org/10.1159/000524587
Skakkebæk, A., Kjær-Sørensen, K., Matchkov, V. V., Christensen, L. L., Just, J., Cömert, C., Andersen, N. H.
, Oxvig, C. & Gravholt, C. H. (2023).
Dosage of the pseudoautosomal gene SLC25A6 is implicated in QTc interval duration.
Scientific Reports,
13(1), Article 12089.
https://doi.org/10.1038/s41598-023-38867-3
Christensen, M. H., Drue, S. O., Rasmussen, M. H., Frydendahl, A., Lyskjær, I., Demuth, C., Nors, J., Gotschalck, K. A., Iversen, L. H., Andersen, C. L. & Pedersen, J. S. (2023).
Dreams: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection.
Genome Biology,
24(1), 99. Article 99.
https://doi.org/10.1186/s13059-023-02920-1
Somavarapu, A. K., Kleijwegt, G.
, Nagaraj, M., Alam, P., Nielsen, J. & Otzen, D. E. (2023).
Drug repurposing screens identify compounds that inhibit α-synuclein oligomers' membrane disruption and block antibody interactions.
Chemical Science,
14(11), 3030-3047.
https://doi.org/10.1039/d2sc05534a
Polák, P., Garland, W., Rathore, O., Schmid, M., Salerno-Kochan, A., Jakobsen, L.
, Gockert, M., Gerlach, P.
, Silla, T., Andersen, J. S., Conti, E.
& Jensen, T. H. (2023).
Dual agonistic and antagonistic roles of ZC3H18 provide for co-activation of distinct nuclear RNA decay pathways.
Cell Reports,
42(11), Article 113325.
https://doi.org/10.1016/j.celrep.2023.113325
Jensen, M. B., Franchi, G. A., Larsen, M., Foldager, L. & Herskin, M. S. (2023).
Effects of feed energy density, daily milking frequency, and a single injection of cabergoline on behavior and welfare in dairy cows at dry-off.
Journal of Dairy Science,
106(12), 9136-9149.
https://doi.org/10.3168/jds.2022-22835
Hernández-Castellano, L. E., Sørensen, M. T., Foldager, L., Herskin, M. S., Gross, J. J., Bruckmaier, R. M.
& Larsen, M. (2023).
Effects of feeding level, milking frequency, and single injection of cabergoline on blood metabolites, hormones, and minerals around dry-off in dairy cows.
Journal of Dairy Science,
106(4), 2919-2932.
https://doi.org/10.3168/jds.2022-22648
Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Thodberg, K., Petersen, D. L. S.
& Herskin, M. S. (2023).
Effects of journey duration and temperature during pre-slaughter transport on behaviour of cull sows in lairage.
Research in Veterinary Science,
164, Article 105016.
https://doi.org/10.1016/j.rvsc.2023.105016
Heger, T., Stock, C., Laursen, M. J., Habeck, M., Dieudonné, T. & Nissen, P. (2023).
eGFP as an All-in-One Tag for Purification of Membrane Proteins. In
Methods in Molecular Biology (Vol. 2652, pp. 171-186). Humana Press.
https://doi.org/10.1007/978-1-0716-3147-8_9
Zhou, Y., Zhan, X., Jin, J., Zhou, L.
, Bergman, J., Li, X.
, Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. ... Zhang, G. (2023).
Eighty million years of rapid evolution of the primate Y chromosome.
Nature Ecology & Evolution,
7(7), 1114-1130.
https://doi.org/10.1038/s41559-022-01974-x
Roeters, S. J., Strunge, K., Pedersen, K. B., Golbek, T. W., Bregnhøj, M., Zhang, Y., Wang, Y., Dong, M., Nielsen, J., Otzen, D. E., Schiøtt, B. & Weidner, T. (2023).
Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces.
Nature Communications,
14(1), Article 5731.
https://doi.org/10.1038/s41467-023-39843-1
Bohr, F., Bohr, S. S. R., Mishra, N. K.
, González-Foutel, N. S., Pinholt, H. D.
, Wu, S., Nielsen, E. M.
, Zhang, M., Kjaergaard, M., Jensen, K. J. & Hatzakis, N. S. (2023).
Enhanced hexamerization of insulin via assembly pathway rerouting revealed by single particle studies.
Communications Biology,
6(1), Article 178.
https://doi.org/10.1038/s42003-022-04386-6
Maimaitili, M., Chen, M., Febbraro, F., Ucuncu, E., Kelly, R., Niclis, J. C., Christiansen, J. R.
, Mermet-Joret, N., Niculescu, D., Lauritsen, J., Iannielli, A.
, Klæstrup, I. H., Jensen, U. B., Qvist, P., Nabavi, S., Broccoli, V.
, Nykjær, A., Romero-Ramos, M. & Denham, M. (2023).
Enhanced production of mesencephalic dopaminergic neurons from lineage-restricted human undifferentiated stem cells.
Nature Communications,
14(1), Article 7871.
https://doi.org/10.1038/s41467-023-43471-0
Rasmussen, M. Q., Tindbæk, G., Nielsen, M. M., Merrild, C., Steiniche, T., Pedersen, J. S., Moestrup, S. K., Degn, S. E. & Madsen, M. (2023).
Epigenetic Silencing of LRP2 Is Associated with Dedifferentiation and Poor Survival in Multiple Solid Tumor Types.
Cancers,
15(6), Article 1830.
https://doi.org/10.3390/cancers15061830
Rheinbay, E.
, Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G.
, Hornshøj, H., Hess, J. M.
, Juul, R. I., Lin, Z., Feuerbach, L., Sabarinathan, R.
, Madsen, T., Kim, J., Mularoni, L., Shuai, S., Lanzós, A., Herrmann, C., Maruvka, Y. E. ... PCAWG Drivers and Functional Interpretation Working Group (2023).
Erratum: Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature (2020) 578 7793 (102-111)).
Nature,
614(7948), E40.
https://doi.org/10.1038/s41586-022-05599-9
Bergeron, L. A.
, Besenbacher, S., Zheng, J., Li, P.
, Bertelsen, M. F., Quintard, B., Hoffman, J. I., Li, Z., St. Leger, J., Shao, C., Stiller, J.
, Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2023).
Evolution of the germline mutation rate across vertebrates.
Nature,
615(7951), 285-291.
https://doi.org/10.1038/s41586-023-05752-y
Duszkiewicz, A. J., Rossato, J. I.
, Moreno, A., Takeuchi, T., Yamasaki, M., Genzel, L., Spooner, P., Canals, S. & Morris, R. G. M. (2023).
Execution of new trajectories toward a stable goal without a functional hippocampus.
Hippocampus,
33(6), 769-786.
https://doi.org/10.1002/hipo.23497
Skov, L., Coll Macià, M., Lucotte, E. A., Cavassim, M. I. A., Castellano, D.
, Schierup, M. H. & Munch, K. (2023).
Extraordinary selection on the human X chromosome associated with archaic admixture.
Cell Genomics,
3(3), Article 100274.
https://doi.org/10.1016/j.xgen.2023.100274