Peer-reviewed articles

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Peer-reviewed publications at MBG

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Schnepf, D., Crotta, S., Thamamongood, T., Stanifer, M., Polcik, L., Ohnemus, A., Vier, J., Jakob, C., Llorian, M., Gad, H. H., Hartmann, R., Strobl, B., Kirschnek, S., Boulant, S., Schwemmle, M., Wack, A. & Staeheli, P. (2021). Selective Janus kinase inhibition preserves interferon-λ-mediated antiviral responses. Science Immunology, 6(59), [eabd5318]. https://doi.org/10.1126/sciimmunol.abd5318

Sekmen Cetinel, A. H., Yalcinkaya, T., Akyol, T. Y., Gokce, A. & Turkan, I. (2021). Pretreatment of seeds with hydrogen peroxide improves deep-sowing tolerance of wheat seedlings. Plant Physiology and Biochemistry, 167, 321-336. https://doi.org/10.1016/j.plaphy.2021.08.016

Selas, A., Fuertes, M., Melcón-Fernández, E., Pérez-Pertejo, Y., Reguera, R. M., Balaña-Fouce, R., Knudsen, B. R., Palacios, F. & Alonso, C. (2021). Hybrid quinolinyl phosphonates as heterocyclic carboxylate isosteres: Synthesis and biological evaluation against topoisomerase 1B (TOP1B). Pharmaceuticals, 14(8), [784]. https://doi.org/10.3390/ph14080784

Serpell, L. C., Radford, S. E. & Otzen, D. (2021). AlphaFold: A Special Issue and a Special time for Protein Science. Journal of Molecular Biology, 433(20), [167231]. https://doi.org/10.1016/j.jmb.2021.167231

Shahsavar, A., Stohler, P., Bourenkov, G., Zimmermann, I., Siegrist, M., Guba, W., Pinard, E., Sinning, S., Seeger, M. A., Schneider, T. R., Dawson, R. J. P. & Nissen, P. (2021). Structural insights into the inhibition of glycine reuptake. Nature, 591, 677-681. https://doi.org/10.1038/s41586-021-03274-z

Shemesh, M., Aktepe, T. E., Deerain, J. M., McAuley, J. L., Audsley, M. D., David, C. T., Purcell, D. F. J., Urin, V., Hartmann, R., Moseley, G. W., Mackenzie, J. M., Schreiber, G. & Harari, D. (2021). SARS-CoV-2 suppresses IFNβ production mediated by NSP1, 5, 6, 15, ORF6 and ORF7b but does not suppress the effects of added interferon. PLOS Pathogens, 17(8), [e1009800]. https://doi.org/10.1371/journal.ppat.1009800

Shrestha, A., Zhong, S., Therrien, J., Huebert, T., Sato, S., Mun, T., Andersen, S. U., Stougaard, J., Lepage, A., Niebel, A., Ross, L. & Szczyglowski, K. (2021). Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling. New Phytologist, 229(3), 1535-1552. https://doi.org/10.1111/nph.16950

Silberberg, J. M., Corey, R. A., Hielkema, L., Stock, C., Stansfeld, P. J., Paulino, C. & Hänelt, I. (2021). Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC. Nature Communications, 12(1), [5098]. https://doi.org/10.1038/s41467-021-25242-x

Stagsted, L. V. W., O'Leary, E. T., Ebbesen, K. K. & Hansen, T. B. (2021). The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals. eLife, 10, [e63088]. https://doi.org/10.7554/eLife.63088

Støy, S., Terczynska-Dyla, E., Veidal, S. S., Rigbolt, K., Vilstrup, H., Grønbaek, H., Hartmann, R. & Sandahl, T. D. (2021). Interferon lambda 4 genotype and pathway in alcoholic hepatitis. Scandinavian Journal of Gastroenterology, 56(3), 304-311. https://doi.org/10.1080/00365521.2021.1874046

Sweet, M. E., Larsen, C., Zhang, X., Schlame, M., Pedersen, B. P. & Stokes, D. L. (2021). Structural basis for potassium transport in prokaryotes by KdpFABC. Proceedings of the National Academy of Sciences of the United States of America, 118(29), [e2105195118]. https://doi.org/10.1073/pnas.2105195118

Talotta, R., Bahrami, S. & Laska, M. J. (2021). POS0349 SEQUENCE COMPLEMENTARITY BETWEEN SARS-CoV-2 GENOME AND HUMAN NONCODING RNAS ASSOCIATED WITH IMMUNOLOGICAL DISORDERS: AN IN SILICO PIVOTAL STUDY. Annals of the Rheumatic Diseases, 80, 404-405.

Tanu, T., Taniue, K., Imamura, K., Onoguchi-Mizutani, R., Han, H., Jensen, T. H. & Akimitsu, N. (2021). hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression. RNA Biology, 18(sup1), 537-547. https://doi.org/10.1080/15476286.2021.1971439

Taschner, M., Basquin, J., Steigenberger, B., Schäfer, I. B., Soh, Y. M., Basquin, C., Lorentzen, E., Räschle, M., Scheltema, R. A. & Gruber, S. (2021). Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding. EMBO Journal, 40(15), [e107807]. https://doi.org/10.15252/embj.2021107807

Thorup, C., Petro, C., Bøggild, A., Ebsen, T. S., Brokjær, S., Nielsen, L. P., Schramm, A. & Bjerg, J. J. (2021). How to grow your cable bacteria: Establishment of a stable single-strain culture in sediment and proposal of Candidatus Electronema aureum GS. Systematic and Applied Microbiology, 44(5), [126236]. https://doi.org/10.1016/j.syapm.2021.126236

Timcenko, M., Dieudonné, T., Montigny, C., Boesen, T., Lyons, J. A., Lenoir, G. & Nissen, P. (2021). Structural Basis of Substrate-Independent Phosphorylation in a P4-ATPase Lipid Flippase. Journal of Molecular Biology, 433(16), [167062]. https://doi.org/10.1016/j.jmb.2021.167062

Tsochatzis, E., Berggreen, I. E., Tedeschi, F., Ntrallou, K., Gika, H. & Corredig, M. (2021). Gut microbiome and degradation product formation during biodegradation of expanded polystyrene by mealworm larvae under different feeding strategies. Molecules, 26(24), [7568]. https://doi.org/10.3390/molecules26247568

Tudek, A., Krawczyk, P. S., Mroczek, S., Tomecki, R., Turtola, M., Matylla-Kulińska, K., Jensen, T. H. & Dziembowski, A. (2021). Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae. Nature Communications, 12, [4951]. https://doi.org/10.1038/s41467-021-25251-w

Turtola, M., Manav, C. M., Kumar, A., Tudek, A., Mroczek, S., Krawczyk, P. S., Dziembowski, A., Schmid, M., Passmore, L. A., Casanal, A. & Jensen, T. H. (2021). Three-layered control of mRNA poly(A) tail synthesis in Saccharomyces cerevisiae. Genes and Development, 35(17-18), 1290-1303. https://doi.org/10.1101/GAD.348634.121

Valero, J., Civit, L., Dupont, D. M., Selnihhin, D., Reinert, L. S., Idorn, M., Israels, B. A., Bednarz, A. M., Bus, C., Asbach, B., Peterhoff, D., Pedersen, F. S., Birkedal, V., Wagner, R., Paludan, S. R. & Kjems, J. (2021). A serum-stable RNA aptamer specific for SARS-CoV-2 neutralizes viral entry. Proceedings of the National Academy of Sciences of the United States of America, 118(50), [e2112942118]. https://doi.org/10.1073/pnas.2112942118

Villar, I., Rubio, M. C., Calvo-Begueria, L., Pérez-Rontomé, C., Larrainzar, E., Wilson, M. T., Sandal, N., Mur, L. A., Wang, L., Reeder, B., Duanmu, D., Uchiumi, T., Stougaard, J. & Becana, M. (2021). Three classes of hemoglobins are required for optimal vegetative and reproductive growth of Lotus japonicus: genetic and biochemical characterization of LjGlb2-1. Journal of Experimental Botany, 72(22), 7778–7791. https://doi.org/10.1093/jxb/erab376

Vittozzi, Y., Nadzieja, M., Rogato, A., Radutoiu, S., Valkov, V. T. & Chiurazzi, M. (2021). The Lotus japonicus NPF3.1 Is a Nodule-Induced Gene That Plays a Positive Role in Nodule Functioning. Frontiers in Plant Science, 12, [688187]. https://doi.org/10.3389/fpls.2021.688187

Vogt, S., Bobbili, M. R., Stadlmayr, G., Stadlbauer, K., Kjems, J., Rüker, F., Grillari, J. & Wozniak-Knopp, G. (2021). An engineered CD81-based combinatorial library for selecting recombinant binders to cell surface proteins: Laminin binding CD81 enhances cellular uptake of extracellular vesicles. Journal of Extracellular Vesicles, 10(11), [e12139]. https://doi.org/10.1002/jev2.12139

Walther, R., Monge, P., Pedersen, A., Benderoth, A., Pedersen, J., Farzadfard, A., Mandrup, O., Howard, K., Otzen, D. & Zelikin, A. N. (2021). Per-glycosylation of the Surface-Accessible Lysines: One-Pot Aqueous Route to Stabilized Proteins with Native Activity. ChemBioChem, 22(14), 2478-2485. https://doi.org/10.1002/cbic.202100228

Wang, X., Hao, D. & Kadarmideen, H. N. (2021). GeneDMRs: An R Package for Gene-Based Differentially Methylated Regions Analysis. Journal of Computational Biology, 28(3), 304-316. https://doi.org/10.1089/cmb.2020.0081

Warnet, X. L., Bakke Krog, H., Sevillano-Quispe, O. G., Poulsen, H. & Kjaergaard, M. (2021). The C-terminal domains of the NMDA receptor: How intrinsically disordered tails affect signalling, plasticity and disease. European Journal of Neuroscience, 54(8), 6713-6739. https://doi.org/10.1111/ejn.14842

Wippel, K., Tao, K., Niu, Y., Zgadzaj, R., Kiel, N., Guan, R., Dahms, E., Zhang, P., Jensen, D. B., Logemann, E., Radutoiu, S., Schulze-Lefert, P. & Garrido-Oter, R. (2021). Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota. Nature Microbiology, 6(9), 1150-1162. https://doi.org/10.1038/s41564-021-00941-9

Xu, J., Sagnelli, D., Faisal, M., Perzon, A., Taresco, V., Mais, M., Giosafatto, C. V. L., Hebelstrup, K. H., Ulvskov, P., Jørgensen, B., Chen, L., Howdle, S. M. & Blennow, A. (2021). Amylose/cellulose nanofiber composites for all-natural, fully biodegradable and flexible bioplastics. Carbohydrate Polymers, 253, [117277]. https://doi.org/10.1016/j.carbpol.2020.117277

Yan, Y., Gu, T., Christensen, S. D. K., Su, J., Lassen, T. R., Hjortbak, M. V., Lo, I., Venø, S. T., Tóth, A. E., Song, P., Nielsen, M. S., Bøtker, H. E., Blagoev, B., Drasbek, K. R. & Kjems, J. (2021). Cyclic hypoxia conditioning alters the content of myoblast-derived extracellular vesicles and enhances their cell-protective functions. Biomedicines, 9(9), [1211]. https://doi.org/10.3390/biomedicines9091211

Ye, L., Schnepf, D., Ohnemus, A., Ong, L. C., Gad, H. H., Hartmann, R., Lycke, N. & Staeheli, P. (2021). Interferon-λ Improves the Efficacy of Intranasally or Rectally Administered Influenza Subunit Vaccines by a Thymic Stromal Lymphopoietin-Dependent Mechanism. Frontiers in Immunology, 12, [749325]. https://doi.org/10.3389/fimmu.2021.749325

Young, J. P. W., Moeskjær, S., Afonin, A., Rahi, P., Maluk, M., James, E. K., Cavassim, M. I. A., Rashid, M. H. O., Aserse, A. A., Perry, B. J., Wang, E. T., Velázquez, E., Andronov, E. E., Tampakaki, A., Félix, J. D. F., González, R. R., Youseif, S. H., Lepetit, M., Boivin, S. ... Tian, C. F. (2021). Defining the rhizobium leguminosarum species complex. Genes, 12(1), [111]. https://doi.org/10.3390/genes12010111

Zak, K. M., Bostock, M. J., Waligorska, I., Thøgersen, I. B., Enghild, J. J., Popowicz, G. M., Grudnik, P., Potempa, J. & Ksiazek, M. (2021). Latency, thermal stability, and identification of an inhibitory compound of mirolysin, a secretory protease of the human periodontopathogen Tannerella forsythia. Journal of Enzyme Inhibition and Medicinal Chemistry, 36(1), 1267-1281. https://doi.org/10.1080/14756366.2021.1937619

Zarantonello, A., Pedersen, H., Laursen, N. S. & Andersen, G. R. (2021). Nanobodies provide insight into the molecular mechanisms of the complement cascade and offer new therapeutic strategies. Biomolecules, 11(2), [298]. https://doi.org/10.3390/biom11020298

Zarei, M., Rahimi, K., Hassanzadeh, K., Abdi, M., Hosseini, V., Fathi, A. & Kakaei, K. (2021). From the environment to the cells: An overview on pivotal factors which affect spreading and infection in COVID-19 pandemic. Environmental Research, 201, [111555]. https://doi.org/10.1016/j.envres.2021.111555

Zhang, B. B. B., Kan, R. L. D., Woo, T. F., Chan, C. C. H., Fong, K. N. K. & Kranz, G. S. (2021). Probing the effects of single-session iTBS on associative memory: A prospective, randomized, controlled cross-over study. Brain Stimulation, 14(4), 924-926. https://doi.org/10.1016/j.brs.2021.05.017

Zhu, Z., Difford, G., Noel, S. J., Lassen, J., Løvendahl, P. & Hojberg, O. (2021). Stability Assessment of the Rumen Bacterial and Archaeal Communities in Dairy Cows Within a Single Lactation and Its Association With Host Phenotype. Frontiers in Microbiology, 12, [636223]. https://doi.org/10.3389/fmicb.2021.636223

de Melo Costa, V. R., Pfeuffer, J., Louloupi, A., Ørom, U. A. V. & Piro, R. M. (2021). SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency. BMC Bioinformatics, 22(1), [368]. https://doi.org/10.1186/s12859-021-04282-6

de Toda, I. M., Rattan, S., De la Feunte, M. & Arranz, L. (2021). Female mice reaching exceptionally high old age have preserved 20S proteasome activities. Antioxidants, 10(9), [1397]. https://doi.org/10.3390/antiox10091397

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Lisbeth Heilesen