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Department of Molecular Biology and Genetics

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Peer-reviewed publications at MBG - 2025

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Valnickova, Z., Thøgersen, I., Skottrup, P., Christensen, T., Højrup, P. & Enghild, J. J. (2006). Post-translational modifications of human thrombin-activatable fibrinolysis inhibitor (TAFI): evidence for a large shift in the isoelectric point and reduced solubility upon activation. Biochemistry, 5(45), 1525-35.

Valnickova, Z., Petersen, S. V., Nielsen, SB., Otzen, D. & Enghild, J. J. (2007). Heparin binding induces a conformational change of pigment epithelium-derived factor (PEDF). Journal of Biological Chemistry.

Valnickova, Z., Thøgersen, I., Potempa, J. & Enghild, J. J. (2007). Thrombin-activable fibrinolysis inhibitor (TAFI) zymogen is an active carboxypeptidase. Journal of Biological Chemistry, 282(2), 1072-9.

Valnickova, Z., Thøgersen, I., Potempa, J. & Enghild, J. J. (2007). The intrinsic enzymatic activity of procarboxypeptidase U (TAFI) does not significantly influence the fibrinolytic rate: reply to a rebuttal. J Thromb Haemost. 2007.

Valnickova, Z., Thøgersen, I., Christensen, S., Chu, C. T., Pizzo, S. V. & Enghild, J. J. (1996). Activated human plasma carboxypeptidase B is retained in the blood by binding to alpha2-macroglobulin and pregnancy zone protein. Journal of Biological Chemistry, 271(22), 12937-43.

Valnickova, Z. & Enghild, J. J. (1998). Human procarboxypeptidase U, or thrombin-activable fibrinolysis inhibitor, is a substrate for transglutaminases. Evidence for transglutaminase-catalyzed cross-linking to fibrin. Journal of Biological Chemistry, 273(42), 27220-4.

Valnickova, Z., Thaysen-Andersen, M., Højrup, P., Christensen, T., Sanggaard, K. W., Kristensen, T. & Enghild, J. J. (2009). Biochemical characterization of bovine plasma thrombin-activatable fibrinolysis inhibitor (TAFI). B M C Biochemistry, 10, 13. https://doi.org/10.1186/1471-2091-10-13

Valnickova, Z., Sanglas, L., Arolas, J. L., Petersen, S. V., Schar, C., Otzen, D., Aviles, F. X., Gomis-Ruth, F. X. & Enghild, J. J. (2010). Flexibility of the thrombin-activatable fibrinolysis inhibitor pro-domain enables productive binding of protein substrates. Journal of Biological Chemistry. https://doi.org/10.1074/jbc.M110.150342

Valnickova, Z., Petersen, S. V., Nielsen, S. B., Otzen, D. E. & Enghild, J. J. (2007). Heparin binding induces a conformational change in pigment epithelium-derived factor. Journal of Biological Chemistry, 282(9), 6661-6667. https://doi.org/10.1074/jbc.M610471200

Vallina, N. S., McRae, E. K. S., Geary, C. & Andersen, E. S. (2024). An RNA origami robot that traps and releases a fluorescent aptamer. Science Advances, 10(12), Article eadk1250. https://doi.org/10.1126/sciadv.adk1250

Vallese, D., Negroni, E., Duguez, S., Ferry, A., Trollet, C., Aamiri, A., Vosshenrich, C. A., Füchtbauer, E.-M., Di Santo, J. P., Vitiello, L., Butler-Browne, G. & Mouly, V. (2013). The Rag2^-I/2rb^-Dmd^- Mouse: a Novel Dystrophic and Immunodeficient Model to Assess Innovating Therapeutic Strategies for Muscular Dystrophies. Molecular Therapy, 21(10), 1950-1957. https://doi.org/10.1038/mt.2013.186

Valero Moreno, J., Centola, M., Ma, Y., Škugor, M., Yu, Z., Haydell, M. W., Keppner, D. & Famulok, M. (2019). Design, assembly, characterization, and operation of double-stranded interlocked DNA nanostructures. Nature Protocols, 14(10), 2818-2855. https://doi.org/10.1038/s41596-019-0198-7

Valero Moreno, J., Pal, N., Dhakal, S., Walter, N. G. & Famulok, M. (2018). A bio-hybrid DNA rotor–stator nanoengine that moves along predefined tracks. Nature Nanotechnology, 13(6), 496-503. https://doi.org/10.1038/s41565-018-0109-z

Valero Moreno, J., Lohmann, F. & Famulok, M. (2017). Interlocked DNA topologies for nanotechnology. Current Opinion in Biotechnology, 48, 159-167. https://doi.org/10.1016/j.copbio.2017.04.002

Valero Moreno, J., Lohmann, F., Keppner, D. & Famulok, M. (2016). Single‐Stranded Tile Stoppers for Interlocked DNA Architectures. ChemBioChem, 17(12), 1146-1149. https://doi.org/10.1002/cbic.201500685

Valero Moreno, J., Shiraishi, T., de Mendoza, J. & Nielsen, P. E. (2015). Cellular Antisense Activity of PNA-Oligo(bicycloguanidinium) Conjugates Forming Self-Assembled Nanoaggregates. ChemBioChem, 16(11), 1593-1600. https://doi.org/10.1002/cbic.201500172

Valero Moreno, J. & de Mendoza, J. (2013). A tetraguanidinium macrocycle for the recognition and cavity expansion of calix[4]arene tetraoxoanions. Supramolecular Chemistry, 25(9-11), 728-740. https://doi.org/10.1080/10610278.2013.835814

Valero Moreno, J., Escuder, B., Miravet, J. F. & de Mendoza, J. (2012). Anion-responsive diguanidinium-based chiral organogelators. Chemistry, 18(41), 13038-13047. http://europepmc.org/abstract/med/22936304

Valero Moreno, J., Van Gool, M., Pérez-Fernández, R., Castreño, P., Sánchez-Quesada, J., Prados, P. & de Mendoza, J. (2012). Non-peptidic cell-penetrating agents: synthesis of oligomeric chiral bicyclic guanidinium vectors. Organic & Biomolecular Chemistry, 10, 5417-5430. https://doi.org/10.1039/C2OB25467K

Valero, J. & Skugor, M. (2020). Mechanisms, Methods of Tracking and Applications of DNA Walkers: A Review. ChemPhysChem, 21(17), 1971-1988. https://doi.org/10.1002/cphc.202000235

Valero, J. & Famulok, M. (2020). Regeneration of Burnt Bridges on a DNA Catenane Walker. Angewandte Chemie - International Edition, 59(38), 16366-16370. https://doi.org/10.1002/anie.202004447

Valero, J., Civit, L., Dupont, D. M., Selnihhin, D., Reinert, L. S., Idorn, M., Israels, B. A., Bednarz, A. M., Bus, C., Asbach, B., Peterhoff, D., Pedersen, F. S., Birkedal, V., Wagner, R., Paludan, S. R. & Kjems, J. (2021). A serum-stable RNA aptamer specific for SARS-CoV-2 neutralizes viral entry. Proceedings of the National Academy of Sciences (PNAS), 118(50), Article e2112942118. https://doi.org/10.1073/pnas.2112942118

Valen, E., Preker, P., Andersen, P. R., Zhao, X., Chen, Y., Ender, C., Dueck, A., Meister, G., Sandelin, A. G. & Jensen, T. H. (2011). Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes. Nature Structural and Molecular Biology, 18(9), 1075-82. https://doi.org/10.1038/nsmb.2091

Vajda, Z., Pedersen, M., Füchtbauer, E.-M., Wertz, K., Stodkilde-Jørgensen, H., Sulyok, E., Doczi, T., Neely, N. D., Agre, P., Frokiar, J. & Nielsen, S. (2002). Delayed onset of brain endema and mislocalization of aquaporin-4 in dystrophin-null transgenic mice. Proceedings of the National Academy of Sciences (PNAS), 99, 13131-13136.

Vad-Nielsen, J., Jakobsen, K. R., Daugaard, T. F., Thomsen, R., Brügmann, A., Sørensen, B. S. & Nielsen, A. L. (2016). Regulatory dissection of the CBX5 and hnRNPA1 bi-directional promoter in human breast cancer cells reveals novel transcript variants differentially associated with HP1α down-regulation in metastatic cells. B M C Cancer, 16(1), 32. Article 32. https://doi.org/10.1186/s12885-016-2059-x

Vader, P., Fens, M. HAM., Sachini, N., van Oirschot, B. A., Andringa, G., Egberts, A. CG., Gaillard, C. AJM., Rasmussen, J. T., van Wijk, R., van Solinge, W. W. & Schiffelers, R. M. (2013). Taxol®-induced phosphatidylserine exposure and microvesicle formation in red blood cells is mediated by its vehicle Cremophor® EL. Nanomedicine, 8(7), 1127-1135. https://doi.org/10.2217/NNM.12.163

Vad, B. S., Thomsen, L. A. H., Bertelsen, K., Franzmann, M., Pedersen, J. M., Nielsen, S. B., Vosegaard, T., Valnickova, Z., Skrydstrup, T., Enghild, J. J., Wimmer, R., Nielsen, N. C. & Otzen, D. (2010). Divorcing folding from function: how acylation affects the membrane-perturbing properties of an antimicrobial peptide. B B A - Proteins and Proteomics, 1804(4), 806-20. https://doi.org/10.1016/j.bbapap.2009.12.006

Vad, B. S., Bertelsen, K., Johansen, C. H., Pedersen, J. M., Skrydstrup, T., Nielsen, N. C. & Otzen, D. E. (2010). Pardaxin permeabilizes vesicles more efficiently by pore formation than by disruption. Biophysical Journal, 98(4), 576-85. https://doi.org/10.1016/j.bpj.2009.08.063

Vad, B. S., Balakrishnan, V. S., Nielsen, S. B. & Otzen, D. (2015). Phospholipid Ether Linkages Significantly Modulate the Membrane Affinity of the Antimicrobial Peptide Novicidin. Journal of Membrane Biology, 487-496. https://doi.org/10.1007/s00232-015-9792-y

Urbanski, D. F., Malolepszy, A., Stougaard, J. & Andersen, S. U. (2012). Genome-wide LORE1 retrotransposon mutagenesis and high-throughput insertion detection in Lotus japonicus. Plant Journal, 69(4), 731-741. https://doi.org/10.1111/j.1365-313X.2011.04827.x

Urbanski, D. F., Malolepszy, A., Stougaard, J. & Andersen, S. U. (2013). High-Throughput and Targeted Genotyping of Lotus japonicus LORE1 Insertion Mutants. Methods in Molecular Biology, 1069, 119-146. https://doi.org/10.1007/978-1-62703-613-9_10

Ung, K. L., Alsarraf, H., Kremer, L. & Blaise, M. (2022). MmpL3, the trehalose monomycolate transporter, is stable in solution in several detergents and can be reconstituted into peptidiscs. Protein Expression and Purification, 191, Article 106014. https://doi.org/10.1016/j.pep.2021.106014

Ung, K. L., Alsarraf, H., Kremer, L. & Blaise, M. (2022). Corrigendum to “MmpL3, the trehalose monomycolate transporter, is stable in solution in several detergents and can be reconstituted into peptidiscs” [Protein Expr. Purif. 191 (March 2022) 106014]. Protein Expression and Purification, 195-196, 106088. Article 106088. https://doi.org/10.1016/j.pep.2022.106088

Ung, K. L., Winkler, M., Schulz, L., Kolb, M., Janacek, D. P., Dedic, E., Stokes, D. L., Hammes, U. Z. & Pedersen, B. P. (2022). Structures and mechanism of the plant PIN-FORMED auxin transporter. Nature, 609(7927), 605-610. https://doi.org/10.1038/s41586-022-04883-y

Ung, K. L., Schulz, L., Kleine-Vehn, J., Pedersen, B. P. & Hammes, U. Z. (2023). Auxin transport at the endoplasmic reticulum: Roles and structural similarity of PIN-FORMED and PIN-LIKES. Journal of Experimental Botany, 74(22), 6893-6903. https://doi.org/10.1093/jxb/erad192

Ung, K. L., Schulz, L., Stokes, D. L., Hammes, U. Z. & Pedersen, B. P. (2023). Substrate recognition and transport mechanism of the PIN-FORMED auxin exporters. Trends in Biochemical Sciences, 48(11), 937-948. https://doi.org/10.1016/j.tibs.2023.07.006

Ung, K. L., Alsarraf, H. M. A. B., Kremer, L. & Blaise, M. (2020). The crystal structure of the mycobacterial trehalose monomycolate transport factor A, TtfA, reveals an atypical fold. Proteins: Structure, Function and Bioinformatics, 88(6), 809-815. https://doi.org/10.1002/prot.25863

Ung, K. L., Kremer, L. & Blaise, M. (2021). Structural analysis of the N-acetyltransferase Eis1 from Mycobacterium abscessus reveals the molecular determinants of its incapacity to modify aminoglycosides. Proteins: Structure, Function and Bioinformatics, 89(1), 94-106. https://doi.org/10.1002/prot.25997

Ung, K. L., Alsarraf, H. M. A. B., Olieric, V., Kremer, L. & Blaise, M. (2019). Crystal structure of the aminoglycosides N-acetyltransferase Eis2 from Mycobacterium abscessus. FEBS journal, 286(21), 4342-4355. https://doi.org/10.1111/febs.14975

Underhaug, J., Koldsø, H., Runager, K., Nielsen, J. T., Sørensen, C. S., Kristensen, T., Otzen, D., Karring, H., Malmendal, A., Schiøtt, B., Enghild, J. J. & Nielsen, N. C. (2013). Mutation in transforming growth factor beta induced protein associated with granular corneal dystrophy type 1 reduces the proteolytic susceptibility through local structural stabilization. BBA General Subjects, 1834(12), 2812–2822. https://doi.org/10.1016/j.bbapap.2013.10.008

Underbjerg, M., Kesmodel, U. S., Landrø, N. I., Bakketeig, L. S., Grove, J., Wimberley, T., Kilburn, T. R., Sværke, C., Thorsen, P. & Mortensen, E. L. (2012). The Effects of Low to Moderate Alcohol Consumption and Binge Drinking in Early Pregnancy on Selective and Sustained Attention in Five-Year-Old Children. B J O G, 119(10), 1211-1221. https://doi.org/10.1111/j.1471-0528.2012.03396.x

Umakoshi, H., Persson, J., Kroon, M., Johansson, H. O., Otzen, D. E., Kuboi, R. & Tjerneld, F. (2000). Model process for separation based on unfolding and refolding of chymotrypsin inhibitor 2 in thermoseparating polymer two-phase systems. Journal of Chromatography B: Biomedical Sciences and Applications, 743(1-2), 13-19. https://doi.org/10.1016/S0378-4347(00)00190-0

Ulrich, A., Andersen, K. R. & Schwartz, T. U. (2012). Exponential megapriming PCR (EMP) cloning-seamless DNA insertion into any target plasmid without sequence constraints. PLOS ONE, 7(12), e53360. https://doi.org/10.1371/journal.pone.0053360

Ulleland, M., Eilertsen, I., Quadros, E. V., Rothenberg, S. P., Fedosov, S., Sundrehagen, E. & Ørning, L. (2002). Direct assay for cobalamin bound to transcobalamin (holo-transcobalamin) in serum. Clin. Chem., 48, 526-532.

Uhd, J., Okholm, A., Kjems, J. & Astakhova, K. (2017). Amplification-free liquid biopsy by fluorescence approach. In Biotech, Biomaterials and Biomedical - TechConnect Briefs 2017 (Vol. 3, pp. 106-109). TechConnect. https://briefs.techconnect.org/wp-content/volumes/TCB2017v3/pdf/762.pdf

Ugleholdt, R., Pedersen, J., Bassi, M. R., Füchtbauer, E.-M., Jørgensen, S. M., Kissow, H.-L., Nytofte, N., Poulsen, S. S., Rosenkilde, M. M., Seino, Y., Thams, P., Holst, P. J. & Holst, J. J. (2011). Transgenic Rescue of Adipocyte Glucose-dependent Insulinotropic Polypeptide Receptor Expression Restores High Fat Diet-induced Body Weight Gain. Journal of Biological Chemistry, 286(52), 44632-44645. https://doi.org/10.1074/jbc.M111.311779

Uckert, W., Becker, C., Gladow, M., Klein, D., Kammertoens, T., Pedersen, L. & Blankenstein, T. (2000). Efficient gene transfer into primary human CD8⁺ T Lymphocytes by MuLV-10A1 retrovirus pseudotype. Hum. Gene Ther., 11, 1005-1014.

Uckert, W., Willimsky, G., Pedersen, F. S., Blankenstein, T. & Pedersen, L. (1998). RNA levels of human retrovirus receptors Pit1 and Pit2 do not correlate with infectibility by three retroviral vector pseudotypes. Human Gene Therapy, 9(17), 2619-2627. https://doi.org/10.1089/hum.1998.9.17-2619

Tzivelekidis, T., Jank, T., Pohl, C., Schlosser, A., Rospert, S., Knudsen, C. R., Rodnina, M., Belyi, Y. & Aktories, K. (2011). Aminoacyl-tRNA-charged eukaryotic elongation factor 1A is a bona fide substrate for Legionelle pneumophila effector glucosyltransferases. P L o S One, 6(12), e29525. https://doi.org/10.1371/journal.pone.0029525

Turyna, B., Osyczka, A., Kostrzewa, A., Blicharski, W., Enghild, J. J. & Froncisz, W. (1998). Preparation and electron paramagnetic resonance characterization of spin labeled monoderivatives of horse cytochrome c. BBA General Subjects, 1386(1), 50-8.

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