Conover, C. A., Mason, M. A., Bale, L. K., Harrington, S. C., Nyegaard, M., Oxvig, C. & Overgaard, M. T. (2010). Transgenic overexpression of pregnancy-associated plasma protein-A in murine arterial smooth muscle accelerates atherosclerotic lesion development. American Journal of Physiology: Heart and Circulatory Physiology, 299(2), 284-291. https://doi.org/10.1152/ajpheart.00904.2009

Duszynska, D., Vilhjalmsson, B., Castillo Bravo, R., Swamidatta, S., Juenger, T. E., Donoghue, M. T. A., Comte, A., Nordborg, M., Sharbel, T. F., Brychkova, G., McKeown, P. C. & Spillane, C. (2019). Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids. Plant Reproduction, 32(3), 275-289. https://doi.org/10.1007/s00497-019-00369-6

Ortiz, C. O., Chen, B. K., Bale, L. K., Overgaard, M. T., Oxvig, C. & Conover, C. A. (2003). Transforming growth factor-beta regulation of the insulin-like growth factor binding protein-4 protease system in cultured human osteoblasts. J. Bone Miner. Res., 18, 1066-1072.

Hedegaard, C. J., Thøgersen, I. B., Enghild, J. J., Klintworth, G. K. & Møller-Pedersen, T. (2003). Transforming growth factor beta induced protein accumulation in granular corneal dystrophy type III (Reis-Bucklers dystrophy). Identification by mass spectrometry in 15 year old two-dimensional protein gels. Molecular Vision, 9, 355-359.

Petit, A., Stougaard, J., Kühle, A., Marcker, K. A. & Tempé, J. (1987). Transformation and regeneration of the legume Lotus corniculatus: A system for molecular studies of symbiotic nitrogen fixation. MGG Molecular & General Genetics, 207(2-3), 245-250. https://doi.org/10.1007/BF00331585

Colón, E., Shytuhina, A., Cowman, M. K., Band, P. A., Sanggaard, K. W., Enghild, J. J. & Wisniewski, H.-G. (2009). Transfer of inter-alpha-inhibitor heavy chains to hyaluronan by surface-linked hyaluronan-TSG-6 complexes. Journal of Biological Chemistry, 284(4), 2320-2231. https://doi.org/10.1074/jbc.M807183200

Pathak, G. S., Hinge, M. & Otzen, D. (2023). Transdisciplinary Pragmatic Melioration for the Plastic Life Cycle: Why the Social, Natural, and Technical Sciences Should Prioritize Reducing Harm. Science of the Total Environment, 895, Article 165154. https://doi.org/10.1016/j.scitotenv.2023.165154

Hao, D., Wang, X., Wang, X., Thomsen, B., Kadarmideen, H. N., Lan, X., Huang, Y. & Chen, H. (2020). Transcriptomic changes in bovine skeletal muscle cells after resveratrol treatment. Gene, 754, Article 144849. https://doi.org/10.1016/j.gene.2020.144849

Cheng, Z., Palma-Vera, S., Buggiotti, L., Salavati, M., Becker, F., Werling, D., Wathes, D. C. & GplusE Consortium (2022). Transcriptomic analysis of circulating leukocytes obtained during the recovery from clinical mastitis caused by escherichia coli in Holstein dairy cows. Animals, 12(16), 1-22. Article 2146. https://doi.org/10.3390/ani12162146

Okholm, T. L. H., Sathe, S., Park, S. S., Kamstrup, A. B., Rasmussen, A. M., Shankar, A., Chua, Z. M., Fristrup, N., Nielsen, M. M., Vang, S., Dyrskjøt, L., Aigner, S., Damgaard, C. K., Yeo, G. W. & Pedersen, J. S. (2020). Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression. Genome Medicine, 12(112), Article 112. https://doi.org/10.1186/s13073-020-00812-8

Winge, S. B., Dalgaard, M. D., Jensen, J. M., Graem, N., Schierup, M. H., Juul, A., Rajpert-De Meyts, E. & Almstrup, K. (2018). Transcriptome profiling of fetal Klinefelter testis tissue reveals a possible involvement of long non-coding RNAs in gonocyte maturation. Human Molecular Genetics, 27(3), 430-439. https://doi.org/10.1093/hmg/ddx411

Jensen, J. H., Madsen, L. B., Panitz, F., Hornshøj, H., Nielsen, R. O., Bendixen, C., Oksbjerg, N. & Thomsen, B. (2017). Transcriptome dynamics during proliferation and differentiation of porcine primary satellite cells. Gene Reports, 7, 169-175. https://doi.org/10.1016/j.genrep.2017.04.007

Miles, A. E., Dos Santos, F. C., Byrne, E. M., Renteria, M. E., McIntosh, A. M., Adams, M. J., Pistis, G., Castelao, E., Preisig, M., Baune, B. T., Schubert, K. O., Lewis, C. M., Jones, L. A., Jones, I., Uher, R., Smoller, J. W., Perlis, R. H., Levinson, D. F., Potash, J. B. ... Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2021). Transcriptome-based polygenic score links depression-related corticolimbic gene expression changes to sex-specific brain morphology and depression risk. Neuropsychopharmacology, 46(13), 2304-2311. https://doi.org/10.1038/s41386-021-01189-x

Lauber, C., Vieyres, G., Terczynska-Dyla, E., Kusuma, A., Dijkman, R., Gad, H. H., Akhtar, H., Geffers, R., Vondran, F., Thiel, V., Kaderali, L., Pietschmann, T. & Hartmann, R. (2015). Transcriptome analysis reveals a classical interferon signature induced by IFNλ4 in human primary cells. Genes and Immunity, 16, 414-421. https://doi.org/10.1038/gene.2015.23

Duan, J., Sanggaard, K. W., Schauser, L., Lauridsen, S. E., Enghild, J. J., Schierup, M. H. & Wang, T. (2017). Transcriptome Analysis of the Response of Burmese Python to Digestion. GigaScience, 6(8), 1-51. Article gix057. https://doi.org/10.1093/gigascience/gix057

Winge, S. B., Dalgaard, M. D., Belling, K. G., Jensen, J. M., Nielsen, J. E., Aksglaede, L., Schierup, M. H., Brunak, S., Skakkebæk, N. E., Juul, A., Rajpert-De Meyts, E. & Almstrup, K. (2018). Transcriptome analysis of the adult human Klinefelter testis and cellularity-matched controls reveals disturbed differentiation of Sertoli- and Leydig cells article. Cell Death and Disease, 9(6), Article 586. https://doi.org/10.1038/s41419-018-0671-1

Ernst, E. H., Nielsen, J., Ipsen, M. B., Villesen, P. & Lykke-Hartmann, K. (2018). Transcriptome analysis of long non-coding RNAs and genes encoding paraspeckle proteins during human ovarian follicle development. Frontiers in Cell and Developmental Biology, 6(78), Article 78. https://doi.org/10.3389/fcell.2018.00078

Rennie, S., Dalby, M., Lloret-Llinares, M., Bakoulis, S., Dalager Vaagensø, C., Heick Jensen, T. & Andersson, R. (2018). Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities. Nucleic Acids Research, 46(11), 5455–5469. https://doi.org/10.1093/nar/gky244

Botkjaer, J. A., Pors, S. E., Petersen, T. S., Kristensen, S. G., Jeppesen, J. V., Oxvig, C. & Andersen, C. Y. (2019). Transcription profile of the insulin-like growth factor signaling pathway during human ovarian follicular development. Journal of Assisted Reproduction and Genetics, 36(5), 889-903. https://doi.org/10.1007/s10815-019-01432-x

Marcker, A., Lund, M., Jensen, E. Ø. & Marcker, K. A. (1984). Transcription of the soybean leghemoglobin genes during nodule development. E M B O Journal, 3(8), 1691-1695.

Schmid, M. & Jensen, T. H. (2013). Transcription-associated quality control of mRNP. BBA General Subjects, 1829(1), 158-168. https://doi.org/10.1016/j.bbagrm.2012.08.012

Vestergaard, A. L., Knudsen, U. B., Munk, T., Rosbach, H. & Martensen, P. M. (2011). Transcriptional expression of type I interferon response genes and stability of housekeeping genes in the human endometrium and endometriosis. Molecular Human Reproduction, 17(4), 243-254. https://doi.org/10.1093/molehr/gaq100

Fedosov, S., Petersen, T. E. & Nexø, E. (1996). Transcobalamin from cow milk: isolation and physico-chemical properties. Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology, 1292(1), 111-119. https://doi.org/10.1016/0167-4838(95)00173-5

Hannibal, L., Bolisetty, K., Axhemi, A., DiBello, P. M., Quadros, E. V., Fedosov, S. & Jacobsen, D. W. (2018). Transcellular transport of cobalamin in aortic endothelial cells. FASEB Journal, 32(10), 5506-5519. https://doi.org/10.1096/fj.201701141RR

Pektas, A., Panitz, F. & Thomsen, B. (2024). TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation. Genes, 15(12), Article 1547. https://doi.org/10.3390/genes15121547

Rivas-González, I., Schierup, M. H., Wakeley, J. & Hobolth, A. (2024). Trails: Tree reconstruction of ancestry using incomplete lineage sorting. PLOS Genetics, 20(2), Article e1010836. https://doi.org/10.1371/journal.pgen.1010836

Wingfield, J. L., Lechtreck, K.-F. & Lorentzen, E. (2018). Trafficking of ciliary membrane proteins by the intraflagellar transport/BBSome machinery. Essays in Biochemistry, 62(6), 753-763. https://doi.org/10.1042/EBC20180030

Mohammad-Beigi, H., Scavenius, C., Jensen, P. B., Kjaer-Sorensen, K., Oxvig, C., Boesen, T., Enghild, J. J., Sutherland, D. S. & Hayashi, Y. (2020). Tracing the In Vivo Fate of Nanoparticles with a "Non-Self" Biological Identity. ACS Nano, 14(8), 10666-10679. https://doi.org/10.1101/2020.03.27.012146, https://doi.org/10.1021/acsnano.0c05178

Krauth, N., Khalil, V., Jariwala, M., Mermet-Joret, N., Vestergaard, A. K., Capogna, M. & Nabavi, S. (2020). TRACE: An Unbiased Method to Permanently Tag Transiently Activated Inputs. Frontiers in Cellular Neuroscience, 14, Article 114. https://doi.org/10.3389/fncel.2020.00114

Sand, A., Holt, M. K., Johansen, J., Brodal, G. S., Mailund, T. & Pedersen, C. N. S. (2014). tqDist: A Library for Computing the Quartet and Triplet Distances Between Binary and General Trees. Bioinformatics, 30(4), 2079-2080. https://doi.org/10.1093/bioinformatics/btu157

Bay-Richter, C., Buttenschon, H., Foldager, L., Kolstad, H., Kaerlev, L., Thomsen, J., Mors, N. P. O. & Wegener, G. (2014). Toxoplasma gondii seropositivity is positively associated with anxiety and burnout-syndrome. International Journal of Neuropsychopharmacology, 17, 43-43.

Harms, A., Brodersen, D. E., Mitarai, N. & Gerdes, K. (2018). Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology. Molecular Cell, 70(5), 768-784. https://doi.org/10.1016/j.molcel.2018.01.003

Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A., Pedersen, C. N. S. & Brodersen, D. E. (2017). Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Research, 45(5), 2875-2886. https://doi.org/10.1093/nar/gkw1266

Beer, C., Foldbjerg, R., Hayashi, Y., Sutherland, D. S. & Autrup, H. (2012). Toxicity of silver nanoparticles-Nanoparticle or silver ion? Toxicology Letters, 208, 286-292. https://doi.org/10.1016/j.toxlet.2011.11.002

Chalmers, S. B., Madgwick, S., Lloyd-Lewis, B., McClurg, U. L., Elias, S., Andersen, P., Madsen, R., Ananthanarayanan, V. & Davis, F. M. (2023). Towards inclusive and sustainable scientific meetings. Nature Cell Biology, 25(11), 1557-1560. https://doi.org/10.1038/s41556-023-01222-9

Wiborg, O., Andersen, C., Knudsen, C. R., Kristensen, T. J. & Clark, B. F. C. (1994). Towards an understanding of structure-function relationships of elongation factor Tu. Biotechnology and Applied Biochemistry, 19 ( Pt 1), 3-15.

Bofill-De Ros, X. (2023). Toward learning the rules that predict siRNA efficacy. Molecular Therapy - Nucleic Acids, 33, 543-544. https://doi.org/10.1016/j.omtn.2023.07.023

Kjaer, T. R., Thiel, S. & Andersen, G. R. (2013). Toward a structure-based comprehension of the lectin pathway of complement. Molecular Immunology, 56(4), 413-422. https://doi.org/10.1016/j.molimm.2013.05.007

Kjaer, T. R., Thiel, S. & Andersen, G. R. (2013). Toward a structure-based comprehension of the lectin pathway of complement. Molecular Immunology, 56(3), 222-231. https://doi.org/10.1016/j.molimm.2013.05.220

Andersen, A. H., Gocke, E., Bonven, B. J., Nielsen, O. F. & Westergaard, O. (1985). Topoisomerase I has a strong binding preference for a conserved hexadecameric sequence in the promoter region of the rRNA gene from Tetrahymena pyriformis. Nucleic Acids Research, 13(5), 1543-57.

Kjeldsen, E., Hübner, G. M., Tordrup, D. P., Knudsen, B. R. & Andersen, F. F. (2010). Topoisomerase I Deficiency Results in Chromosomal Alterations in Cervical Cancer Cells. Anticancer Research, 30, 3257-3265.

Proszek, J., Roy, A., Jakobsen, A.-K., Hougaard, R. F., Knudsen, B. R. & Stougaard, M. (2014). Topoisomerase I as a Biomarker: Detection of Activity at the Single Molecule Level. Sensors, 14(1), 1195-1207. https://doi.org/10.3390/s140101195

Tesauro, C., Simonsen, A. K., Andersen, M. B., Petersen, K. W., Kristoffersen, E. L., Algreen, L., Hansen, N. Y., Andersen, A. B., Jakobsen, A. K., Stougaard, M., Gromov, P., Knudsen, B. R. & Gromova, I. (2019). Topoisomerase I activity and sensitivity to camptothecin in breast cancer-derived cells: a comparative study. BMC Cancer, 19(1), Article 1158. https://doi.org/10.1186/s12885-019-6371-0

Keller, J. G., Hymøller, K. M., Thorsager, M. E., Hansen, N. Y., Erlandsen, J. U., Tesauro, C., Simonsen, A. K. W., Andersen, A. B., Vandsø Petersen, K., Holm, L. L., Stougaard, M., Andresen, B. S., Kristensen, P., Frøhlich, R. & Knudsen, B. R. (2022). Topoisomerase 1 inhibits MYC promoter activity by inducing G-quadruplex formation. Nucleic Acids Research, 50(11), 6332-6342. https://doi.org/10.1093/nar/gkac482

Juul-Kristensen, T., Keller, J. G., Borg, K. N., Hansen, N. Y., Foldager, A., Ladegaard, R., Ho, Y. P., Loeschcke, V. & Knudsen, B. R. (2023). Topoisomerase 1 Activity Is Reduced in Response to Thermal Stress in Fruit Flies and in Human HeLa Cells. Biosensors, 13(11), Article 950. https://doi.org/10.3390/bios13110950

Mundbjerg, K., Jørgensen, S. W., Fredsøe, J., Nielsen, I., Pedersen, J. M., Bentsen, I. B., Lisby, M., Bjergbaek, L. & Andersen, A. H. (2015). Top2 and Sgs1-Top3 Act Redundantly to Ensure rDNA Replication Termination. P L o S Genetics, 11(12), e1005697. https://doi.org/10.1371/journal.pgen.1005697