Selected publications
- Peter Zeller*, Marloes Blotenburg*, Vivek Bhardwaj, Buys Anton de Barbanson, Fredrik Salmén, Alexander van Oudenaarden
T-ChIC: multi-omic detection of histone modifications and full-length transcriptomes in the same single cell
Biorxiv 13/05/2024
https://www.biorxiv.org/content/10.1101/2024.05.09.593364v1 - Samy Kefalopoulou*, Pim M.J. Rullens*, Kim L de Luca, Sandra S. de Vries, Korthout, Alexander van Oudenaarden, Peter Zeller+, Jop Kind+ *equal contribution +jointly supervised
Time-resolved and multifactorial profiling in single cells resolves the order of heterochromatin formation events during X-chromosome inactivation
Biorxiv 17/12/2023
https://www.biorxiv.org/content/10.1101/2023.12.15.571749v1.article-metrics - Peter Zeller*, Jake Yeung*, Helena Viñas Gaza, Buys Anton de Barbanson, Vivek Bhardwaj, Maria Florescu, Reinier van der Linden, Alexander van Oudenaarden.
Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis
Nature Genetics 55, 333-345, 2023 *equal contributionhttps://www.nature.com/articles/s41588-022-01260-3 - Jake Yeung*, Maria Florescu*, Peter Zeller*, Buys Anton de Barbanson, Max D. Wellenstein, Alexander van Oudenaarden.
scChIX-seq infers dynamic relationships between histone modifications in single cells.
Nature Biotechnology 02/01/2023 *equal contributionhttps://www.nature.com/articles/s41587-022-01560-3 - Jan Padeken*, Peter Zeller*, Benjamin Towbin, Iskra Katic, Veronique Kalck, Stephen P Methot, Susan M Gasser. Synergistic lethality between BRCA1 and H3K9me2 loss reflects satellite derepression.
Genes Dev 33, 436-451, 2019 *equal contribution
http://genesdev.cshlp.org/content/33/7-8/436.long - Zeller P*, Padeken J*, Schendel R v, Kalck V, Tijsterman M, Gasser SM.
Repression by H3K9me is dispensable for C. elegans development, but suppresses RNA:DNA hybrid-associated repeat instability.
Nature Genetics 48, 1385–1395, 2016 *equal contributionhttp://www.nature.com/ng/journal/v48/n11/full/ng.3672.html
Publication list – other publications
- Ning Qing Liu*, Irene Paassen*, Lars Custers, Peter Zeller, Hans Teunissen, Dilara Ayyildiz, Jiayou He, Juliane Laura Buhl, Eelco Wieger Hoving, Alexander van Oudenaarden, Elzo de Wit, Jarno Drost
SMARCB1 loss activates patient-specific distal oncogenic enhancers in malignant rhabdoid tumors
Nat Commun 14, 7762, 2023 *equal contribution - https://pubmed.ncbi.nlm.nih.gov/38040699/
V. Bondarenko, M. Nikolaev, D. Kromm, R. Belousov, A. Wolny, M. Blotenburg, P. Zeller, S. Rezakhani, J. Hugger, V. Uhlmann, L. Hufnagel, A. Kreshuk, J. Ellenberg, A. van Oudenaarden, A. Erzberger, M. P Lutolf, T. Hiiragi
Embryo-uterine interaction coordinates mouse embryogenesis during implantation
The EMBO Journal e113280, 2023
https://www.embopress.org/doi/full/10.15252/embj.2022113280 - Stephen P Methot*, Jan Padeken*, Giovanna Brancati, Peter Zeller, Colin E Delaney, Dimos Gaidatzis, Hubertus Kohler, Alexander van Oudenaarden, Helge Großhans, Susan M Gasser.
H3K9me selectively blocks transcription factor activity and ensures differentiated tissue integrity.
Nat Cell Biol 23, 1163-1175, 2021 *equal contribution
https://www.nature.com/articles/s41556-021-00776-w - Jan Padeken, Stephen Methot, Peter Zeller, Colin E Delaney, Veronique Kalck, Susan M Gasser.
Argonaute NRDE-3 and MBT domain protein LIN-61 redundantly recruit an H3K9me3 HMT to prevent embryonic lethality and transposon expression.
Genes Dev 35, 82-101, 2020
http://genesdev.cshlp.org/content/35/1-2/82.long - Mintern JD, Macri C, Chin WJ, Panozza SE, Segura E, Patterson NL, Zeller P, Bourges D, Bedoui S, McMillan PJ, Idris A, Nowell CJ, Brown A, Radford KJ, Johnston APR, and Villadangos JA.
Differential use of autophagy by primary dendritic cells specialized in cross-presentation.
Autophagy 11(6): 906–917, 2015
http://www.tandfonline.com/doi/full/10.1080/15548627.2015.1045178
Reviews
Book chapter
