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Seneste peer-review'ede publikationer ved MBG

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Peer-review'ede publikationer ved MBG - alle år

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Larsen, K. E., Steffensen, J. F., Majgren, B. F. & Jørgensen, H. (2021). Somniosus microcephalus Nei-like DNA glycosylase 1 (NEIL1) mRNA, partial cds. GenBank Accession No. MZ055367. Datasæt, NCBI. PubMed. https://www.ncbi.nlm.nih.gov/nuccore/MZ055367

Larsen, K. E., Chana Munoz, A., Panitz, F., Majgren, B. F. & Jørgensen, H. (2021). Squalus acanthias Nei-like DNA glycosylase 1 (NEIL1) mRNA, partial cds. GenBank Accession No. MZ055368.. Datasæt, NCBI. PubMed. https://www.ncbi.nlm.nih.gov/nuccore/2085593662

Hendriks, I. A., Buch-Larsen, S. C., Prokhorova, E., Elsborg, J. D., Rebak, A. K. L. F. S., Zhu, K., Ahel, D., Lukas, C., Ahel, I. & Nielsen, M. L. (2021). The regulatory landscape of the human HPF1-and ARH3-dependent ADP-ribosylome. Nature Communications, 12(1), Artikel 5893. https://doi.org/10.1038/s41467-021-26172-4

Gallina, I., Hendriks, I. A., Hoffmann, S., Larsen, N. B., Johansen, J., Colding-Christensen, C. S., Schubert, L., Sellés-Baiget, S., Fábián, Z., Kühbacher, U., Gao, A. O., Räschle, M., Rasmussen, S., Nielsen, M. L., Mailand, N. & Duxin, J. P. (2021). The ubiquitin ligase RFWD3 is required for translesion DNA synthesis. Molecular Cell, 81(3), 442-458.e9. https://doi.org/10.1016/j.molcel.2020.11.029

Bange, G., Brodersen, D. E., Liuzzi, A. & Steinchen, W. (2021). Two P or Not Two P: Understanding Regulation by the Bacterial Second Messengers (p)ppGpp. Annual Review of Microbiology, 75, 383-406. https://doi.org/10.1146/annurev-micro-042621-122343

Harwood, S. L., Nielsen, N. S., Pedersen, H., Kjøge, K., Nielsen, P. K., Andersen, G. R. & Enghild, J. J. (2020). Substituting the Thiol Ester of Human A2M or C3 with a Disulfide Produces Native Proteins with Altered Proteolysis-Induced Conformational Changes. Biochemistry, 59(51), 4799–4809. https://doi.org/10.1021/acs.biochem.0c00803

Buggiotti, L., Cheng, Z., Wathes, D. C., GplusE Consortium & Ingvartsen, K. L. (2020). Mining the unmapped reads in bovine RNA-Seq data reveals the prevalence of bovine herpes virus-6 in European dairy cows and the associated changes in their phenotype and leucocyte transcriptome. Viruses, 12(12), Artikel 1451. https://doi.org/10.3390/v12121451

Harwood, S. L., Nielsen, N. S., Jensen, K. T., Nielsen, P. K., Thøgersen, I. B. & Enghild, J. J. (2020). α₂-macroglobulin-like protein 1 can conjugate and inhibit proteases through their hydroxyl groups, because of an enhanced reactivity of its thiol ester. Journal of Biological Chemistry, 295(49), 16732-16742. https://doi.org/10.1074/jbc.RA120.015694

Yang, A., Shao, T. J., Bofill-De Ros, X., Lian, C., Villanueva, P., Dai, L. & Gu, S. (2020). AGO-bound mature miRNAs are oligouridylated by TUTs and subsequently degraded by DIS3L2. Nature Communications, 11(1), Artikel 2765. https://doi.org/10.1038/s41467-020-16533-w

Just, J., Yan, Y., Farup, J., Sieljacks, P., Sloth, M., Venø, M., Gu, T., de Paoli, F. V., Nyengaard, J. R., Bæk, R., Jørgensen, M. M., Kjems, J., Vissing, K. & Drasbek, K. R. (2020). Blood flow-restricted resistance exercise alters the surface profile, miRNA cargo and functional impact of circulating extracellular vesicles. Scientific Reports, 10(1), Artikel 5835. https://doi.org/10.1038/s41598-020-62456-3

Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., PCAWG Drivers and Functional Interpretation Group, Johnson, R. & PCAWG Consortium (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications Biology, 3(1), Artikel 56. https://doi.org/10.1038/s42003-019-0741-7

Yang, C., Aslan, H., Zhang, P., Zhu, S., Xiao, Y., Chen, L., Khan, N., Boesen, T., Wang, Y., Liu, Y., Wang, L., Sun, Y., Feng, Y., Besenbacher, F., Zhao, F. & Yu, M. (2020). Carbon dots-fed Shewanella oneidensis MR-1 for bioelectricity enhancement. Nature Communications, 11(1), Artikel 1379. https://doi.org/10.1038/s41467-020-14866-0

van der Weijden, V. A. & Ulbrich, S. E. (2020). Embryonic diapause in roe deer: A model to unravel embryo-maternal communication during pre-implantation development in wildlife and livestock species. Theriogenology, 158, 105–111. https://doi.org/10.1016/j.theriogenology.2020.06.042

Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., Zhang, Z., Brazma, A., PCAWG Transcriptome Working Group, PCAWG Structural Variation Working Group, Creighton, C. J. & PCAWG Consortium (2020). High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nature Communications, 11(1), Artikel 736. https://doi.org/10.1038/s41467-019-13885-w

Madsen, T., Nielsen, M. M., Pedersen, J. S., PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium (2020). Inferring structural variant cancer cell fraction. Nature Communications, 11(1), Artikel 730. https://doi.org/10.1038/s41467-020-14351-8

Rabaglino, M. B. & Kadarmideen, H. N. (2020). Machine learning approach to integrated endometrial transcriptomic datasets reveals biomarkers predicting uterine receptivity in cattle at seven days after estrous. Scientific Reports, 10(1), Artikel 16981. https://doi.org/10.1038/s41598-020-72988-3

Mohammad-Beigi, H., Hayashi, Y., Zeuthen, C. M., Eskandari, H., Scavenius, C., Juul-Madsen, K., Vorup-Jensen, T., Enghild, J. J. & Sutherland, D. S. (2020). Mapping and identification of soft corona proteins at nanoparticles and their impact on cellular association. Nature Communications, 11(1), Artikel 4535. https://doi.org/10.1038/s41467-020-18237-7

Carmelo, V. A. O., Banerjee, P., da Silva Diniz, W. J. & Kadarmideen, H. N. (2020). Metabolomic networks and pathways associated with feed efficiency and related-traits in Duroc and Landrace pigs. Scientific Reports, 10(1), Artikel 255. https://doi.org/10.1038/s41598-019-57182-4

Fulgenzi, G., Hong, Z., Tomassoni-Ardori, F., Barella, L. F., Becker, J., Barrick, C., Swing, D., Yanpallewar, S., Croix, B. S., Wess, J., Gavrilova, O. & Tessarollo, L. (2020). Novel metabolic role for BDNF in pancreatic β-cell insulin secretion. Nature Communications, 11(1), 1950. Artikel 1950. https://doi.org/10.1038/s41467-020-15833-5

Godskesen, L. E., Lassen, T. R., Jespersen, N. R., Siersbæk, M., Yan, Y., Nielsen, M. M., Tjønnfjord, S. K., Grøntved, L., Madsen, G., Kjems, J., Bøtker, H. E., Schmidt, M. R., Krag, A. & Kjeldsen, J. (2020). Remote ischemic conditioning in active ulcerative colitis: An explorative randomized clinical trial. Scientific Reports, 10(1), Artikel 9537. https://doi.org/10.1038/s41598-020-65692-9

Thoma, J., Abuillan, W., Furikado, I., Habe, T., Yamamoto, A., Gierlich, S., Kaufmann, S., Brandenburg, K., Gutsmann, T., Konovalov, O., Inoue, S. & Tanaka, M. (2020). Specific localisation of ions in bacterial membranes unravels physical mechanism of effective bacteria killing by sanitiser. Scientific Reports, 10(1), 12302. Artikel 12302. https://doi.org/10.1038/s41598-020-69064-1

Andrzejczak, O. A., Sørensen, C. K., Wang, W.-Q., Kovalchuk, S., Hagensen, C. E., Jensen, O. N., Carciofi, M., Hovmøller, M. S., Rogowska-Wrzesinska, A., Møller, I. M. & Hebelstrup, K. (2020). The effect of phytoglobin overexpresseion on the plant proteome during nonhost response of barley (Hordeum vulgare) to wheat powdery mildew (Blumeria graminis f. sp. tritici). Scientific Reports, 10(1), Artikel 9192. https://doi.org/10.1038/s41598-020-65907-z

Mooser, C., Symeonidou, I. E., Leimbacher, P. A., Ribeiro, A., Shorrocks, A. M. K., Jungmichel, S., Larsen, S. C., Knechtle, K., Jasrotia, A., Zurbriggen, D., Jeanrenaud, A., Leikauf, C., Fink, D., Nielsen, M. L., Blackford, A. N. & Stucki, M. (2020). Treacle controls the nucleolar response to rDNA breaks via TOPBP1 recruitment and ATR activation. Nature Communications, 11(1), Artikel 123. https://doi.org/10.1038/s41467-019-13981-x

Gotfryd, K., Boesen, T., Mortensen, J. S., Khelashvili, G., Quick, M., Terry, D. S., Missel, J. W., LeVine, M. V., Gourdon, P., Blanchard, S. C., Javitch, J. A., Weinstein, H., Loland, C. J., Nissen, P. & Gether, U. (2020). X-ray structure of LeuT in an inward-facing occluded conformation reveals mechanism of substrate release. Nature Communications, 11(1), Artikel 1005. https://doi.org/10.1038/s41467-020-14735-w

Cai, H., Holleufer, A., Simonsen, B., Schneider, J., Lemoine, A., Gad, H. H., Huang, J., Huang, J., Chen, D., Peng, T., Marques, J. T., Hartmann, R., Martins, N. E. & Imler, J. L. (2020). 2'3'-cGAMP triggers a STING- and NF-κB-dependent broad antiviral response in Drosophila. Science Signaling, 13(660), Artikel eabc4537. https://doi.org/10.1126/scisignal.abc4537

Das Mahapatra, K., Pasquali, L., Søndergaard, J. N., Lapins, J., Nemeth, I. B., Baltás, E., Kemény, L., Homey, B., Moldovan, L. I., Kjems, J., Kutter, C., Sonkoly, E., Kristensen, L. S. & Pivarcsi, A. (2020). A comprehensive analysis of coding and non-coding transcriptomic changes in cutaneous squamous cell carcinoma. Scientific Reports, 10, Artikel 3637. https://doi.org/10.1038/s41598-020-59660-6

Hajipour, M. J., Mohammad-Beigi, H., Nabipour, I., Mahmoudi, N., Azhdarzadeh, M., Derakhshankhah, H., El Dawud, D., Mohammadinejad, R. & Otzen, D. (2020). Amyloid fibril inhibition, acceleration, or fragmentation: Are nano-based approaches advance in the right direction? Nano Today, 35(December), Artikel 100983. https://doi.org/10.1016/j.nantod.2020.100983

Nordeen, S. A., Andersen, K. R., Knockenhauer, K. E., Ingram, J. R., Ploegh, H. L. & Schwartz, T. U. (2020). A nanobody suite for yeast scaffold nucleoporins provides details of the nuclear pore complex structure. Nature Communications, 11(1), Artikel 6179. https://doi.org/10.1038/s41467-020-19884-6

Pedersen, H. S., Mazzoni, G., Pihl, M., Kadarmideen, H., Hyttel, P. & Callesen, H. (2020). Bovine in-vitro produced embryos: development of embryo proper and associated membranes from day 26 to 47 of gestation. Reproductive Biology, 20(4), 595-599. https://doi.org/10.1016/j.repbio.2020.10.001

Schytte, G. N., Christensen, B., Bregenov, I., Kjøge, K., Scavenius, C., Petersen, S. V., Enghild, J. J. & Sørensen, E. S. (2020). FAM20C phosphorylation of the RGDSVVYGLR motif in osteopontin inhibits interaction with the αvβ3 integrin. Journal of Cellular Biochemistry, 121(12), 4809-4818. https://doi.org/10.1002/jcb.29708

Lee, Y. L., Takada, H., Moreira, G. C. M., Karim, L., GplusE Consortium, Bosse, M., Bouwman, A., Mullaart, E., Coppieters, W., Georges, M., Druet, T. & Charlier, C. (2020). Fine resolution CNV catalogue from deeply sequenced cattle genomes. I Book of Abstracts of the 71st Annual Meeting of the European Federation of Animal Science (Bind 26, s. 188). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-900-8

Thomsen, P. T., Capion, N. & Foldager, L. (2020). Higher odds of abortion in dairy cows hoof trimmed late in gestation. Research in Veterinary Science, 133, 1-3. https://doi.org/10.1016/j.rvsc.2020.08.016

Omer, M., Andersen, V. L., Nielsen, J. S., Wengel, J. & Kjems, J. (2020). Improved Cancer Targeting by Multimerizing Aptamers on Nanoscaffolds. Molecular Therapy - Nucleic Acids, 22, 994-1003. https://doi.org/10.1016/j.omtn.2020.10.013

Lo, IJ., Hill, J., Vilhjálmsson, B. J. & Kjems, J. (2020). Linking the association between circRNAs and Alzheimer's disease progression by multi-tissue circular RNA characterization. RNA Biology, 17(12), 1789-1797. https://doi.org/10.1080/15476286.2020.1783487

Higashijima, Y., Nagai, N., Yamamoto, M., Kitazawa, T., Kawamura, Y. K., Taguchi, A., Nakada, N., Nangaku, M., Furukawa, T., Aburatani, H., Kurihara, H., Wada, Y. & Kanki, Y. (2020). Lysine demethylase 7a regulates murine anterior-posterior development by modulating the transcription of Hox gene cluster. Communications Biology, 3(1), 725. Artikel 725. https://doi.org/10.1038/s42003-020-01456-5

Dalskov, L., Møhlenberg, M., Thyrsted, J., Blay-Cadanet, J., Poulsen, E. T., Folkersen, B. H., Skaarup, S. H., Olagnier, D., Reinert, L., Enghild, J. J., Hoffmann, H. J., Holm, C. K. & Hartmann, R. (2020). SARS-CoV-2 evades immune detection in alveolar macrophages. EMBO Reports, 21(12), Artikel e51252. https://doi.org/10.15252/embr.202051252

Favre-Bulle, I. A., Taylor, M. A., Marquez-Legorreta, E., Vanwalleghem, G., Poulsen, R. E., Rubinsztein-Dunlop, H. & Scott, E. K. (2020). Sound generation in zebrafish with Bio-Opto-Acoustics. Nature Communications, 11(1), Artikel 6120. https://doi.org/10.1038/s41467-020-19982-5

Kristensen, L. S., Ebbesen, K. K., Sokol, M., Jakobsen, T., Korsgaard, U., Eriksen, A. C., Hansen, T. B., Kjems, J. & Hager, H. (2020). Spatial expression analyses of the putative oncogene ciRS-7 in cancer reshape the microRNA sponge theory. Nature Communications, 11, Artikel 4551. https://doi.org/10.1038/s41467-020-18355-2

Manav, M. C., Van, L. B., Lin, J., Fuglsang, A., Peng, X. & Brodersen, D. E. (2020). Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein. Nature Communications, 11(1), Artikel 5993. https://doi.org/10.1038/s41467-020-19847-x

Bailey, S., Sroga, G. E., Hoac, B., Katsamenis, O. L., Wang, Z., Bouropoulos, N., McKee, M. D., Sørensen, E. S., Thurner, P. J. & Vashishth, D. (2020). The role of extracellular matrix phosphorylation on energy dissipation in bone. eLife, 9, 1-19. Artikel e58184. https://doi.org/10.7554/eLife.58184

Okholm, T. L. H., Sathe, S., Park, S. S., Kamstrup, A. B., Rasmussen, A. M., Shankar, A., Chua, Z. M., Fristrup, N., Nielsen, M. M., Vang, S., Dyrskjøt, L., Aigner, S., Damgaard, C. K., Yeo, G. W. & Pedersen, J. S. (2020). Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression. Genome Medicine, 12(112), Artikel 112. https://doi.org/10.1186/s13073-020-00812-8

Árnadóttir, S. S., Mattesen, T. B., Vang, S., Madsen, M. R., Madsen, A. H., Birkbak, N. J., Bramsen, J. B. & Andersen, C. L. (2020). Transcriptomic and proteomic intra-tumor heterogeneity of colorectal cancer varies depending on tumor location within the colorectum. PLoS One, 15(12), Artikel e0241148. https://doi.org/10.1371/journal.pone.0241148

Martins, P. M., Navarro, S., Silva, A., Pinto, M. F., Sárkány, Z., Figueiredo, F., Pereira, P. J. B., Pinheiro, F., Bednarikova, Z., Burdukiewicz, M., Galzitskaya, O. V., Gazova, Z., Gomes, C. M., Pastore, A., Serpell, L. C., Skrabana, R., Smirnovas, V., Ziaunys, M., Otzen, D. E. ... Macedo-Ribeiro, S. (2020). MIRRAGGE - Minimum Information Required for Reproducible AGGregation Experiments. Frontiers in Molecular Neuroscience, 13, Artikel 582488. https://doi.org/10.3389/fnmol.2020.582488

Holt-Danborg, L., Skovbjerg, S., Goderum, K. W., Nonboe, A. W., Stankevic, E., Frost, Á. K., Vitved, L., Jensen, J. K. & Vogel, L. K. (2020). Insights into the regulation of the matriptase-prostasin proteolytic system. Biochemical Journal, 477(22), 4349-4365. https://doi.org/10.1042/BCJ20200630

Moesgaard, L., Petersen, D., Szomek, M., Reinholdt, P., Winkler, M., Frain, K. M., Müller, P., Pedersen, B. P., Kongsted, J. & Wüstner, D. (2020). Mechanistic Insight into Lipid Binding to Yeast Niemann Pick Type C2 Protein. Biochemistry, 59(45), 4407–4420. https://doi.org/10.1021/acs.biochem.0c00574

Wong, E. S., Zheng, D., Tan, S. Z., Bower, N. I., Garside, V., Vanwalleghem, G., Gaiti, F., Scott, E., Hogan, B. M., Kikuchi, K., McGlinn, E., Francois, M. & Degnan, B. M. (2020). Deep conservation of the enhancer regulatory code in animals. Science, 370(6517), Artikel eaax8137. https://doi.org/10.1126/science.aax8137

Dai, L., Hallmark, L., Bofill De Ros, X., Crouch, H., Chen, S., Shi, T., Yang, A., Lian, C., Zhao, Y., Tran, B. & Gu, S. (2020). Novel, abundant Drosha isoforms are deficient in miRNA processing in cancer cells. RNA Biology, 17(11), 1603-1612. https://doi.org/10.1080/15476286.2020.1813439

Stoll, L., Rodríguez-Trejo, A., Guay, C., Brozzi, F., Bayazit, M. B., Gattesco, S., Menoud, V., Sobel, J., Marques, A. C., Venø, M. T., Esguerra, J. L. S., Barghouth, M., Suleiman, M., Marselli, L., Kjems, J., Eliasson, L., Renström, E., Bouzakri, K., Pinget, M. ... Regazzi, R. (2020). A circular RNA generated from an intron of the insulin gene controls insulin secretion. Nature Communications, 11, Artikel 5611. https://doi.org/10.1038/s41467-020-19381-w

Zhang, B., Nandakumar, R., Reinert, L. S., Huang, J., Laustsen, A., Gao, Z., Sun, C., Jensen, S. B., Troldborg, A., Assil, S., Berthelsen, M. F., Scavenius, C., Zhang, Y., Windross, S. J., Olagnier, D., Prabakaran, T., Bodda, C., Narita, R., Cai, Y. ... Paludan, S. R. (2020). Author Correction: STEEP mediates STING ER exit and activation of signaling (Nature Immunology, (2020), 21, 8, (868-879), 10.1038/s41590-020-0730-5). Nature Immunology, 21(11), 1468-1469. https://doi.org/10.1038/s41590-020-0803-5

Dalskov, L., Narita, R., Andersen, L. L., Jensen, N., Assil, S., Kristensen, K. H., Mikkelsen, J. G., Fujita, T., Mogensen, T. H., Paludan, S. R. & Hartmann, R. (2020). Characterization of distinct molecular interactions responsible for IRF₃ and IRF₇ phosphorylation and subsequent dimerization. Nucleic Acids Research, 48(20), 11421-11433. https://doi.org/10.1093/nar/gkaa873

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Helene Eriksen