Sampedro Vallina, N., McRae, E. K. S., Hansen, B. K., Boussebayle, A. & Andersen, E. S. (2023).
RNA origami scaffolds facilitate cryo-EM characterization of a Broccoli-Pepper aptamer FRET pair.
Nucleic Acids Research,
51(9), 4613-4624.
https://doi.org/10.1093/nar/gkad224
Zhang, X., Galenkamp, N. S., Heide, N. J. V. D.
, Valero Moreno, J., Maglia, G.
& Kjems, J. (2023).
Specific Detection of Proteins by a Nanobody-Functionalized Nanopore Sensor.
ACS Nano,
17(10), 9167-9177.
https://doi.org/10.1021/acsnano.2c12733
Ng, K. W., Boumelha, J., Enfield, K. S. S., Almagro, J., Cha, H., Pich, O., Karasaki, T., Moore, D. A., Salgado, R., Sivakumar, M., Young, G., Molina-Arcas, M., de Carné Trécesson, S., Anastasiou, P., Fendler, A., Au, L., Shepherd, S. T. C., Martínez-Ruiz, C., Puttick, C. ... CAPTURE Consortium (2023).
Antibodies against endogenous retroviruses promote lung cancer immunotherapy.
Nature,
616(7957), 563-573.
https://doi.org/10.1038/s41586-023-05771-9Mohammad-Beigi, H., Wijaya, W., Madsen, M.
, Hayashi, Y., Li, R., Maria Rovers, T. A., Jæger, T. C., Buell, A. K., Hougaard, A. B., Kirkensgaard, J. J. K., Westh, P., Ipsen, R. & Svensson, B. (2023).
Association of caseins with β-lactoglobulin influenced by temperature and calcium ions: A multi-parameter analysis.
Food Hydrocolloids,
137, Artikel 108373.
https://doi.org/10.1016/j.foodhyd.2022.108373Al-Sawaf, O., Weiss, J., Skrzypski, M., Lam, J. M., Karasaki, T., Zambrana, F., Kidd, A. C., Frankell, A. M., Watkins, T. B. K., Martínez-Ruiz, C., Puttick, C., Black, J. R. M., Huebner, A., Bakir, M. A., Collins, S., Veeriah, S., Magno, N., Naceur-Lombardelli, C., Prymas, P. ... TRACERx Consortium (2023).
Body composition and lung cancer-associated cachexia in TRACERx.
Nature Medicine,
29(4), 846-858.
https://doi.org/10.1038/s41591-023-02232-8Afonine, P. V.
, Gobet, A., Moissonnier, L., Martin, J., Poon, B. K. & Chaptal, V. (2023).
Conformational space exploration of cryo-EM structures by variability refinement.
Biochimica et biophysica acta - Biomembranes,
1865(4), 184133. Artikel 184133.
https://doi.org/10.1016/j.bbamem.2023.184133Hernández-Castellano, L. E., Sørensen, M. T., Foldager, L., Herskin, M. S., Gross, J. J., Bruckmaier, R. M.
& Larsen, M. (2023).
Effects of feeding level, milking frequency, and single injection of cabergoline on blood metabolites, hormones, and minerals around dry-off in dairy cows.
Journal of Dairy Science,
106(4), 2919-2932.
https://doi.org/10.3168/jds.2022-22648
Karasaki, T., Moore, D. A., Veeriah, S., Naceur-Lombardelli, C., Toncheva, A., Magno, N., Ward, S., Bakir, M. A., Watkins, T. B. K., Grigoriadis, K., Huebner, A., Hill, M. S., Frankell, A. M., Abbosh, C., Puttick, C., Zhai, H., Gimeno-Valiente, F., Saghafinia, S., Kanu, N. ... TRACERx Consortium (2023).
Evolutionary characterization of lung adenocarcinoma morphology in TRACERx.
Nature Medicine,
29(4), 833-845.
https://doi.org/10.1038/s41591-023-02230-wMartínez-Ruiz, C., Black, J. R. M., Puttick, C., Hill, M. S., Demeulemeester, J., Larose Cadieux, E., Thol, K., Jones, T. P., Veeriah, S., Naceur-Lombardelli, C., Toncheva, A., Prymas, P., Rowan, A., Ward, S., Cubitt, L., Athanasopoulou, F., Pich, O., Karasaki, T., Moore, D. A. ... TRACERx Consortium (2023).
Genomic-transcriptomic evolution in lung cancer and metastasis.
Nature,
616(7957), 543-552.
https://doi.org/10.1038/s41586-023-05706-4Frankell, A. M., Dietzen, M., Al Bakir, M., Lim, E. L., Karasaki, T., Ward, S., Veeriah, S., Colliver, E., Huebner, A., Bunkum, A., Hill, M. S., Grigoriadis, K., Moore, D. A., Black, J. R. M., Liu, W. K., Thol, K., Pich, O., Watkins, T. B. K., Naceur-Lombardelli, C. ... TRACERx Consortium (2023).
The evolution of lung cancer and impact of subclonal selection in TRACERx.
Nature,
616(7957), 525-533.
https://doi.org/10.1038/s41586-023-05783-5Al Bakir, M., Huebner, A., Martínez-Ruiz, C., Grigoriadis, K., Watkins, T. B. K., Pich, O., Moore, D. A., Veeriah, S., Ward, S., Laycock, J., Johnson, D., Rowan, A., Razaq, M., Akther, M., Naceur-Lombardelli, C., Prymas, P., Toncheva, A., Hessey, S., Dietzen, M. ... TRACERx Consortium (2023).
The evolution of non-small cell lung cancer metastases in TRACERx.
Nature,
616(7957), 534-542.
https://doi.org/10.1038/s41586-023-05729-xAbbosh, C., Frankell, A. M., Harrison, T.
, Kisistok, J., Garnett, A., Johnson, L., Veeriah, S., Moreau, M., Chesh, A., Chaunzwa, T. L., Weiss, J., Schroeder, M. R., Ward, S., Grigoriadis, K., Shahpurwalla, A., Litchfield, K., Puttick, C., Biswas, D., Karasaki, T. ... TRACERx Consortium (2023).
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
Nature,
616(7957), 553-562.
https://doi.org/10.1038/s41586-023-05776-4Jayakodi, M., Golicz, A. A., Kreplak, J.
, Fechete, L. I., Angra, D., Bednář, P.
, Bornhofen, E., Zhang, H., Boussageon, R., Kaur, S., Cheung, K., Čížková, J., Gundlach, H., Hallab, A., Imbert, B., Keeble-Gagnère, G., Koblížková, A., Kobrlová, L., Krejčí, P.
... Andersen, S. U. (2023).
The giant diploid faba genome unlocks variation in a global protein crop.
Nature,
615(7953), 652-659.
https://doi.org/10.1038/s41586-023-05791-5Bergeron, L. A.
, Besenbacher, S., Zheng, J., Li, P.
, Bertelsen, M. F., Quintard, B., Hoffman, J. I., Li, Z., St. Leger, J., Shao, C., Stiller, J.
, Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2023).
Evolution of the germline mutation rate across vertebrates.
Nature,
615(7951), 285-291.
https://doi.org/10.1038/s41586-023-05752-ySørensen, S. G., Shrikhande, A.
, Poulsgaard, G. A., Christensen, M. H., Bertl, J., Laursen, B. E., Hoffmann, E. R.
& Pedersen, J. S. (2023).
Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns.
eLife,
12, Artikel e81224.
https://doi.org/10.7554/elife.81224
Holm, S., Larsen, R. M.
, Holst, C. M., Heide-Jørgensen, M. P., Steffensen, J. F.
, Stevnsner, T. & Larsen, K. (2023).
Bowhead NEIL1: molecular cloning, characterization, and enzymatic properties.
Biochimie,
206, 136-149.
https://doi.org/10.1016/j.biochi.2022.10.014Rasmussen, M. Q., Tindbæk, G., Nielsen, M. M., Merrild, C., Steiniche, T., Pedersen, J. S., Moestrup, S. K., Degn, S. E. & Madsen, M. (2023).
Epigenetic Silencing of LRP2 Is Associated with Dedifferentiation and Poor Survival in Multiple Solid Tumor Types.
Cancers,
15(6), Artikel 1830.
https://doi.org/10.3390/cancers15061830
Skov, L., Coll Macià, M., Lucotte, E. A., Cavassim, M. I. A., Castellano, D.
, Schierup, M. H. & Munch, K. (2023).
Extraordinary selection on the human X chromosome associated with archaic admixture.
Cell Genomics,
3(3), Artikel 100274.
https://doi.org/10.1016/j.xgen.2023.100274
Winters, J. F. M., Foldager, L., Krogh, U., Nørskov, N. & Sørensen, M. T. (2023).
Impact of glyphosate residues in sow diets on neonatal piglets: tail kinks, stillborn and diarrhoea.
Livestock Science,
269, Artikel 105172.
https://doi.org/10.1016/j.livsci.2023.105172
Christensen, B., Nielsen, N. R., Sørensen, M. R., Jacobsen, L. N.
, Ostenfeld, M. S. & Sørensen, E. S. (2023).
Naturally Occurring N-Terminal Fragments of Bovine Milk Osteopontin Are Transported across Models of the Intestinal Barrier.
Biomedicines,
11(3), Artikel 893.
https://doi.org/10.3390/biomedicines11030893
Hasseris, S.
, Albiñana, C., Vilhjalmsson, B. J., Mortensen, P. B., Østergaard, S. D. & Musliner, K. L. (2023).
Polygenic Risk and Episode Polarity Among Individuals With Bipolar Disorder.
American Journal of Psychiatry,
180(3), 200-208.
https://doi.org/10.1176/appi.ajp.22010003Liu, H., Micic, N.
, Miller, S., Crocoll, C. & Bjarnholt, N. (2023).
Species-specific dynamics of specialized metabolism in germinating sorghum grain revealed by temporal and tissue-resolved transcriptomics and metabolomics. Plant Physiology and Biochemistry,
196, 807-820.
https://doi.org/10.1016/j.plaphy.2023.02.031
Mühleip, A.
, Flygaard, R. K., Baradaran, R., Haapanen, O., Gruhl, T., Tobiasson, V., Marechal, A., Sharma, V. & Amunts, A. (2023).
Structural basis of mitochondrial membrane bending by the I-II-III2-IV2 supercomplex.
Nature,
615(7954), 934-938.
https://doi.org/10.1038/s41586-023-05817-yChristensen, B., Buitenhuis, A. J., Jacobsen, L. N., Ostenfeld, M. S. & Sørensen, E. S. (2023).
The Effect of Human and Bovine Milk Osteopontin on Intestinal Caco-2 Cells: A Transcriptome Comparison.
Nutrients,
15(5), Artikel 1166.
https://doi.org/10.3390/nu15051166
Somavarapu, A. K., Kleijwegt, G.
, Nagaraj, M., Alam, P., Nielsen, J. & Otzen, D. E. (2023).
Drug repurposing screens identify compounds that inhibit α-synuclein oligomers' membrane disruption and block antibody interactions.
Chemical Science,
14(11), 3030-3047.
https://doi.org/10.1039/d2sc05534a
Kurihara, Y., Ekimoto, T., Gordon, C. T., Uchijima, Y., Sugiyama, R.
, Kitazawa, T., Iwase, A., Kotani, R., Asai, R., Pingault, V., Ikeguchi, M., Amiel, J. & Kurihara, H. (2023).
Mandibulofacial dysostosis with alopecia results from ETAR gain-of-function mutations via allosteric effects on ligand binding.
Journal of Clinical Investigation,
133(4), Artikel e151536.
https://doi.org/10.1172/JCI151536Busato, S., Gordon, M., Chaudhari, M.
, Thorsgaard Jensen, I., Akyol, T. Y., Andersen, S. U. & Williams, C. (2023).
Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies.
Current Opinion in Plant Biology,
71, Artikel 102326.
https://doi.org/10.1016/j.pbi.2022.102326Jensen, R. K., Pihl, R., Gadeberg, T. A. F., Jensen, J. K., Andersen, K. R., Thiel, S., Laursen, N. S. & Andersen, G. R. (2023).
Correction: A potent complement factor C3-specific nanobody inhibiting multiple functions in the alternative pathway of human and murine complement (Journal of Biological Chemistry (2018) 293(17) (6269–6281), (S0021925820397313), (10.1074/jbc.RA117.001179)).
The Journal of Biological Chemistry,
299(2), Artikel 102951.
https://doi.org/10.1016/j.jbc.2023.102951
Rheinbay, E.
, Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G.
, Hornshøj, H., Hess, J. M.
, Juul, R. I., Lin, Z., Feuerbach, L., Sabarinathan, R.
, Madsen, T., Kim, J., Mularoni, L., Shuai, S., Lanzós, A., Herrmann, C., Maruvka, Y. E. ... PCAWG Drivers and Functional Interpretation Working Group (2023).
Erratum: Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature (2020) 578 7793 (102-111)).
Nature,
614(7948), E40.
https://doi.org/10.1038/s41586-022-05599-9Mustamin, Y.
, Akyol, T. Y., Gordon, M., Manggabarani, A. M., Isomura, Y., Kawamura, Y., Bamba, M., Williams, C.
, Andersen, S. U. & Sato, S. (2023).
FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus.
Plant Physiology,
191(2), 1138-1152.
https://doi.org/10.1093/plphys/kiac533Albiñana, C., Zhu, Z., Borbye-Lorenzen, N., Boelt, S. G., Cohen, A. S., Skogstrand, K., Wray, N. R., Revez, J. A.
, Privé, F., Petersen, L. V., Bulik, C. M.
, Plana-Ripoll, O., Musliner, K. L., Agerbo, E., Børglum, A. D., Hougaard, D. M., Nordentoft, M., Werge, T.
, Mortensen, P. B. ... McGrath, J. J. (2023).
Genetic correlates of vitamin D-binding protein and 25-hydroxyvitamin D in neonatal dried blood spots.
Nature Communications,
14(1), Artikel 852.
https://doi.org/10.1038/s41467-023-36392-5
Demontis, D., Walters, G. B., Athanasiadis, G., Walters, R., Therrien, K.
, Nielsen, T. T., Farajzadeh, L., Voloudakis, G., Bendl, J., Zeng, B., Zhang, W.
, Grove, J., Als, T. D., Duan, J., Satterstrom, F. K., Bybjerg-Grauholm, J., Bækved-Hansen, M., Gudmundsson, O. O., Magnusson, S. H. ... ADHD Working Group of the Psychiatric Genomics Consortium (2023).
Genome-wide analyses of ADHD identify 27 risk loci, refine the genetic architecture and implicate several cognitive domains.
Nature Genetics,
55(2), 198-208.
https://doi.org/10.1038/s41588-022-01285-8
Kabel, J.
, Henriksen, T. V., Demuth, C., Frydendahl, A., Rasmussen, M. H., Nors, J., Birkbak, N. J., Madsen, A. H., Løve, U. S., Andersen, P. V., Kolbro, T., Monti, A., Thorlacius-Ussing, O., Gögenur, M., Kildsig, J., Schlesinger, N. H., Bondeven, P.
, Iversen, L. H., Gotschalck, K. A. & Andersen, C. L. (2023).
Impact of Whole Genome Doubling on Detection of Circulating Tumor DNA in Colorectal Cancer.
Cancers,
15(4), Artikel 1136.
https://doi.org/10.3390/cancers15041136Kristoffersen, E. L., Coletta, A., Lund, L. M., Schiøtt, B. & Birkedal, V. (2023).
Inhibited complete folding of consecutive human telomeric G-quadruplexes.
Nucleic Acids Research,
51(4), 1571-1582.
https://doi.org/10.1093/nar/gkad004
Alijanvand, S. H., Ladefoged, L. K., Zubrienė, A., Sakalauskas, A., Christiansen, G., Dudutiene, V.
, Schiøtt, B., Matulis, D., Smirnovas, V.
& Otzen, D. E. (2023).
Inhibitory effects of fluorinated benzenesulfonamides on insulin fibrillation.
International Journal of Biological Macromolecules,
227, 590-600.
https://doi.org/10.1016/j.ijbiomac.2022.12.105
Li, Z., Anankanbil, S., Pedersen, J. N., Nadzieja, M. & Guo, Z. (2023).
Nanocellulose fractionated from TEMPO-mediated oxidation of cellulose as an energy-free ingredient for stabilizing Pickering emulsion.
Biochemical Engineering Journal,
191, Artikel 108795.
https://doi.org/10.1016/j.bej.2022.108795
Myrup Holst, C., Brøndum Andersen, N., Thinggaard, V., Tilken, M.
, Lautrup, S., Tesauro, C. & Stevnsner, T. (2023).
Phosphorylation of the Human DNA Glycosylase NEIL2 Is Affected by Oxidative Stress and Modulates Its Activity.
Antioxidants,
12(2), Artikel 355.
https://doi.org/10.3390/antiox12020355
Amstrup, S. K., Ong, S. C., Sofos, N., Karlsen, J. L., Skjerning, R. B., Boesen, T., Enghild, J. J., Hove-Jensen, B. & Brodersen, D. E. (2023).
Structural remodelling of the carbon-phosphorus lyase machinery by a dual ABC ATPase.
Nature Communications,
14, Artikel 1001.
https://doi.org/10.1038/s41467-023-36604-y
Zuzic, L., Stange, A. D., Bavnhøj, L., Driller, J. H., Schiøtt, B. & Pedersen, B. P. (2023).
Sweet and sour transport: Simulation insights into H+/sugar symport in plants.
Biophysical Journal,
122(3S1), 197a.
https://doi.org/10.1016/j.bpj.2022.11.1201
Pirhaghi, M., Najarzadeh, Z., Moosavi-Movahedi, F., Shafizadeh, M., Mamashli, F., Atarod, D., Ghasemi, A., Morshedi, D., Meratan, A. A.
, Otzen, D. E. & Saboury, A. A. (2023).
The anti-platelet drug ticlopidine inhibits FapC fibrillation and biofilm production: Highlighting its antibiotic activity.
Biochimica et Biophysica Acta - Proteins and Proteomics,
1871(2), Artikel 140883.
https://doi.org/10.1016/j.bbapap.2022.140883
Reinhold, D., Farztdinov, V.
, Yan, Y., Meisel, C., Sadlowski, H., Kühn, J., Perschel, F. H., Endres, M., Düzel, E., Vielhaber, S., Guttek, K., Goihl, A., Venø, M., Teegen, B., Stöcker, W., Stubbemann, P., Kurth, F., Sander, L. E., Ralser, M. ... Körtvelyessy, P. (2023).
The brain reacting to COVID-19: analysis of the cerebrospinal fluid proteome, RNA and inflammation.
Journal of Neuroinflammation,
20, Artikel 30.
https://doi.org/10.1186/s12974-023-02711-2Hourfar, H., Aliakbari, F., Aqdam, S. R., Nayeri, Z., Bardania, H.
, Otzen, D. E. & Morshedi, D. (2023).
The impact of α-synuclein aggregates on blood-brain barrier integrity in the presence of neurovascular unit cells.
International Journal of Biological Macromolecules,
229, 305-320.
https://doi.org/10.1016/j.ijbiomac.2022.12.134
