Publications

10 selected publications from the last ten years:

1. Jonas D. Elsborg, Sebastian H. N. Munk, Zita Fábian, Alba Adelantado-Rubio, Victor Imburchia, Ivo A. Hendriks, Sara C. Larsen, Jiri Bartek, Sébastien Huet, Julien P. Duxin, Apolinar Maya- Mendoza, Michael L. Nielsen. “PARP1 auto-modification promotes faithful Okazaki fragment processing and limits replication fork speed” Molecular Cell, 2025, Online October 2nd

2. Alexandra K.L.F.S. Rebak, Sara C. Buch-Larsen, Ivo A. Hendriks, Jonas D. Elsborg, Rebecca Kirsch, Nadezhda Tsankova Doncheva, Lars Juhl Jensen, Maria Christophorou and Michael L. Nielsen. “A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates”, Nature Structural & Molecular Biology, 2024

3. Meeli Mullari, Nicolas Fossat, Niels H. Skotte, Andrea Asenjo-Martinez, David T. Humphreys, Jens Buhk, Agnete Kirkeby, Troels K. H. Scheel, and Michael L. Nielsen. “The RNA-binding protein atlas of the mammalian brain uncovers a role for RBM5 in Huntington’s disease”, Nature Communication, 2023,

4. Massimo Carraro, Ivo A Hendriks, Colin M. Hammond, Victor Solis, Moritz Völker-Albert, Jonas D Elsborg, Melanie Weisser, Christos Spanos, Guillermo Motoya, Juri Rappsilber, Axel Imhof, Michael L. Nielsen*, Anja Groth*, “Mapping the histone chaperone network unveils DAXX-mediated heterochromatin assembly”, Molecular Cell, 2023 *Shared correspondence

5. Camilla S. Colding-Christensen, Ellen S. Kakulidis, Javier A. Gomez, Ivo A. Hendriks, Connor Arkinson, Agnieszka Gambus, Niels Mailand, Julien P. Duxin, Michael L. Nielsen. “Profiling ubiquitin signaling with UBIMAX reveals DNA damage- and SCFβTRCP-dependent ubiquitylation of the actin-organizing protein Dbn1”, Nature Communications, 2023

6. Ivo A. Hendriks, Sara C. Buch-Larsen, Evgeniia Prokhorova, Alexandra K.L.F.S. Rebak, Ivan Ahel & Michael L. Nielsen,. “The regulatory landscape of the human HPF1- and ARH3-dependent ADP- ribosylome”, Nature Communications, 2021

7. Ivo A. Hendriks, David Lyon, Dan Su, Jeremy A. Daniel, Lars J. Jensen and Michael L. Nielsen. ”Site-specific characterization of endogenous SUMOylation across species and organs”, Nature Communications, 2018

8. Ivo A. Hendriks, David Lyon, Clifford Young, Lars J. Jensen, Alfred C.O. Vertegaal and Michael L. Nielsen.” Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation”, Nature Structural & Molecular Biology, 2017

9. Sara C. Larsen, Kathrine B. Sylvestersen, Andres Mund, Maria V. Madsen, David Lyon, Jeremy A. Daniel, Lars Juhl-Jensen, and Michael L. Nielsen, “Proteome-wide analysis of arginine mono-methylation reveals wide-spread occurrence in human cells”, Science Signaling, 2016

10. Rita Martello, Mario Leutert, Stephanie Jungmichel, Vera Bilan, Sara C. Larsen, Clifford Young, Michael O. Hottiger and Michael L. Nielsen,“Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue”, Nature Communications, 2016

Peer-reviewed artikler

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Carabias, A., Camara-Wilpert, S., Mestre, M. R., Lopéz-Méndez, B., Hendriks, I. A., Zhao, R., Pape, T., Fuglsang, A., Luk, S. H. C., Nielsen, M. L., Pinilla-Redondo, R. & Montoya, G. (2024). Retron-Eco1 assembles NAD⁺-hydrolyzing filaments that provide immunity against bacteriophages. Molecular Cell, 84(11), 2185-2202.e12. https://doi.org/10.1016/j.molcel.2024.05.001

Condezo, Y. B., Sainz-Urruela, R., Gomez, L. H., Salas-Lloret, D., Felipe-Medina, N., Bradley, R., Wolff, I. D., Tanis, S., Barbero, J. L., Sánchez-Martín, M., de Rooij, D., Hendriks, I. A., Nielsen, M. L., Gonzalez-Prieto, R., Cohen, P. E., Pendas, A. M. & Llano, E. (2024). RNF212B E3 ligase is essential for crossover designation and maturation during male and female meiosis in the mouse. Proceedings of the National Academy of Sciences of the United States of America, 121(25), Artikel e2320995121. https://doi.org/10.1073/pnas.2320995121

Mirsanaye, A. S., Hoffmann, S., Weisser, M., Mund, A., Lopez Mendez, B., Typas, D., van den Boom, J., Benedict, B., Hendriks, I. A., Nielsen, M. L., Meyer, H., Duxin, J. P., Montoya, G. & Mailand, N. (2024). VCF1 is a p97/VCP cofactor promoting recognition of ubiquitylated p97-UFD1-NPL4 substrates. Nature Communications, 15(1), Artikel 2459. https://doi.org/10.1038/s41467-024-46760-4

Mullari, M., Fossat, N., Skotte, N. H., Asenjo-Martinez, A., Humphreys, D. T., Bukh, J., Kirkeby, A., Scheel, T. K. H. & Nielsen, M. L. (2023). Characterising the RNA-binding protein atlas of the mammalian brain uncovers RBM5 misregulation in mouse models of Huntington’s disease. Nature Communications, 14(1), Artikel 4348. https://doi.org/10.1038/s41467-023-39936-x

Anagho, H. A., Elsborg, J. D., Hendriks, I. A., Buch-Larsen, S. C. & Nielsen, M. L. (2023). Characterizing ADP-Ribosylation Sites Using Af1521 Enrichment Coupled to ETD-Based Mass Spectrometry. I Methods in Molecular Biology (s. 251-270). Humana Press. https://doi.org/10.1007/978-1-0716-2891-1_15

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Selected publications

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Revideret 06.05.2026

Helene Eriksen