Kasza, A., Petersen, H. H.
, Heegaard, C. W., Oka, K.
, Christensen, A., Dubin, A., Chan, L.
& Andreasen, P. (1997).
Specificity of serine proteinase/serpin complex binding to very low density lipoprotein receptor and α2-macroglobulin receptor /LDL-receptor-related protein.
FEBS journal,
248, 270-281.
Tesauro, C., Juul, S., Arno, B.
, Nielsen, C. J. F., Fiorani, P.
, Frøhlich, R. F., Andersen, F. F., Desideri, A., Stougaard, M., Petersen, E. & Knudsen, B. R. (2012).
Specific detection of topoisomerase i from the malaria causing P. falciparum parasite using isothermal Rolling Circle Amplification.
I E E E Engineering in Medicine and Biology Society. Conference Proceedings,
2012, 2416-2419.
https://doi.org/10.1109/EMBC.2012.6346451
Jepsen, M. L., Harmsen, C., Godbole, A. A., Nagaraja, V.
, Knudsen, B. R. & Ho, Y.-P. (2016).
Specific detection of the cleavage activity of mycobacterial enzymes using a quantum dot based DNA nanosensor.
Nanoscale,
8(1), 358-364.
https://doi.org/10.1039/c5nr06326d
Zhang, X., Galenkamp, N. S., Heide, N. J. V. D.
, Valero Moreno, J., Maglia, G.
& Kjems, J. (2023).
Specific Detection of Proteins by a Nanobody-Functionalized Nanopore Sensor.
ACS Nano,
17(10), 9167-9177.
https://doi.org/10.1021/acsnano.2c12733
Hansen, M. S., Gadegaard, I. S. E., Christensen, E. A., Blans, K. I. M., Nejsum, L. N. & Rasmussen, J. T. (2020).
Specific and Non-Invasive Fluorescent Labelling of Extracellular Vesicles for Evaluation of Intracellular Processing by Intestinal Epithelial Cells.
Biomedicines,
8(7), Artikel 211.
https://doi.org/10.3390/biomedicines8070211
Bodó, K.
, Hayashi, Y., Gerencsér, G., László, Z., Kéri, A., Galbács, G., Telek, E., Mészáros, M., Deli, M. A., Kokhanyuk, B., Németh, P. & Engelmann, P. (2020).
Species-specific sensitivity of Eisenia earthworms towards noble metal nanoparticles: a multiparametric in vitro study.
Environmental Science: Nano,
7(11), 3509-3525.
https://doi.org/10.1039/c9en01405e
Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K.
, Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J.
, Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K.-P. ... Willerslev, E. (2011).
Species-specific responses of Late Quaternary megafauna to climate and humans.
Nature,
479(7373), 359-64.
https://doi.org/10.1038/nature10574
Jacobs, S., Wavreil, F., Schepens, B.
, Gad, H. H., Hartmann, R., Rocha-Pereira, J., Neyts, J., Saelens, X. & Michiels, T. (2018).
Species Specificity of Type III Interferon Activity and Development of a Sensitive Luciferase-Based Bioassay for Quantitation of Mouse Interferon-λ.
Journal of Interferon & Cytokine Research,
38(11), 469–479.
https://doi.org/10.1089/jir.2018.0066
Liu, H., Micic, N.
, Miller, S., Crocoll, C. & Bjarnholt, N. (2023).
Species-specific dynamics of specialized metabolism in germinating sorghum grain revealed by temporal and tissue-resolved transcriptomics and metabolomics. Plant Physiology and Biochemistry,
196, 807-820.
https://doi.org/10.1016/j.plaphy.2023.02.031
Hayashi, Y., Miclaus, T., Scavenius, C., Kwiatkowska, K., Sobota, A., Engelmann, P.
, Scott-Fordsmand, J. J., Enghild, J. J. & Sutherland, D. S. (2013).
Species Differences Take Shape at Nanoparticles: Protein-Corona Made of the Native Repertoire Assists Cellular Interaction.
Environmental Science & Technology (Washington),
47(24), 14367-14375.
https://doi.org/10.1021/es404132w
Lund, F. W., Jensen, M. L. V., Christensen, T.
, Nielsen, G. K., Heegaard, C. W. & Wüstner, D. (2014).
SpatTrack: An Imaging Toolbox for Analysis of Vesicle Motility and Distribution in Living Cells.
Traffic,
15(12), 1406-1429.
https://doi.org/10.1111/tra.12228
Venø, M. T., Hansen, T. B., Venø, S. T., Clausen, B. H., Grebing, M., Finsen, B., Holm, I. E.
& Kjems, J. (2015).
Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development.
Genome Biology,
16, Artikel 16:245.
https://doi.org/10.1186/s13059-015-0801-3
Venø, M. T., Bramsen, J. B., Bendixen, C., Panitz, F., Holm, I. E., Öhman, M.
& Kjems, J. (2012).
Spatio-temporal regulation of ADAR editing during development in porcine neural tissues.
RNA Biology,
9(8), 1054-1065.
https://doi.org/10.4161/rna.21082
García-Rodríguez, J. L., Korsgaard, U.
, Ahmadov, U., Jarlstad Olesen, M. T., Dietrich, K.-G., Hansen, E. B., Vissing, S. M., Ulhøi, B. P., Dyrskjøt, L., Sørensen, K. D., Kjems, J., Hager, H. & Kristensen, L. S. (2023).
Spatial profiling of circular RNAs in cancer reveals high expression in muscle and stromal cells.
Cancer Research,
83(20), 3340–3353.
https://doi.org/10.1158/0008-5472.CAN-23-0748
Andersen, M. Ø., Le, D. Q. S., Chen, M., Nygaard, J. V., Kassem, M.
, Bünger, C. & Kjems, J. (2013).
Spatially Controlled Delivery of siRNAs to Stem Cells in Implants Generated by Multi-Component Additive Manufacturing.
Advanced Functional Materials,
23(45), 5599-5607.
https://doi.org/10.1002/adfm.201300832
Kristensen, L. S., Ebbesen, K. K., Sokol, M., Jakobsen, T., Korsgaard, U., Eriksen, A. C.
, Hansen, T. B., Kjems, J. & Hager, H. (2020).
Spatial expression analyses of the putative oncogene ciRS-7 in cancer reshape the microRNA sponge theory.
Nature Communications,
11, Artikel 4551.
https://doi.org/10.1038/s41467-020-18355-2
Orr, M. E., Kulasinghe, A., Kolar, G. R., Heyn, H., Plummer, J.
, Sommer Kristensen, L., Kjems, J., Mills, G., Garcia-Vallejo, J. J., Nijman, I. J., West, N. P. & Cox, A. (2024).
Sounding an Alarm over Spatial Biology.
Genetic Engineering and Biotechnology News,
44(3), 16-17.
https://doi.org/10.1089/gen.44.03.07
Favre-Bulle, I. A., Taylor, M. A., Marquez-Legorreta, E.
, Vanwalleghem, G., Poulsen, R. E., Rubinsztein-Dunlop, H. & Scott, E. K. (2020).
Sound generation in zebrafish with Bio-Opto-Acoustics.
Nature Communications,
11(1), Artikel 6120.
https://doi.org/10.1038/s41467-020-19982-5
Richner, M., Pallesen, L. T., Ulrichsen, M., Poulsen, E. T., Holm, T. H., Login, H., Castonguay, A., Lorenzo, L.-E.
, Gonçalves, N. P., Andersen, O. M., Lykke-Hartmann, K., Enghild, J. J., Rønn, L. C. B., Malik, I. J., De Koninck, Y., Bjerrum, O. J.
, Vægter, C. B. & Nykjær, A. (2019).
Sortilin gates neurotensin and BDNF signaling to control peripheral neuropathic pain.
Science Advances,
5(6), Artikel eaav9946.
https://doi.org/10.1126/sciadv.aav9946
Burgert, T., Schmidt, V., Caglayan, S.
, Lin, F., Füchtbauer, A., Füchtbauer, E.-M., Nykjaer, A., Carlo, A.-S. & Willnow, T. E. (2013).
SORLA-Dependent and -Independent Functions for PACS1 in Control of Amyloidogenic Processes.
Molecular and Cellular Biology,
33(21), 4308-4320.
https://doi.org/10.1128/MCB.00628-13
Søe, R., Mosley, R. T., Justice, M., Nielsen-Kahn, J., Shastry, M., Merrill, A. R.
& Andersen, G. R. (2007).
Sordarin derivatives induce a novel conformation of the yeast ribosome translocation factor eEF2.
Journal of Biological Chemistry,
282, 657-666.
Westergaard, U. B.
, Kirkegaard, K., Sørensen, E. S., Jacobsen, C., Nielsen, M. S., Pedersen, J. C. M. & Madsen, P. S. (2005).
SorCS3 does not require propeptide cleavage to bind nerve growth factor.
FEBS Letters,
579(5), 1172-1176.
Westergaard, U. B., Kirkegaard, E.
, Sørensen, E. S., Jacobsen, C., Nielsen, M. S., Petersen, C. M. & Madsen, P. (2005).
SorCS3 does not require propeptide cleavage to bind nerve growth factor.
FEBS Letters,
579, 1172-1176.
Glerup, S., Olsen, D., Vægter, C. B., Gustafsen, C., Sjøgaard, S., Hermey, G., Kjølby, M. F., Jensen, S. M., Ulrichsen, M., Hansen, S. B., Skeldal, S., Fjorback, A. N., Nyengaard, J. R., Jacobsen, J.
, Bender, D., Bjarkam, C. R.
, Sørensen, E. S., Füchtbauer, E.-M., Eichele, G.
... Nykjær, A. (2014).
SorCS2 Regulates Dopaminergic Wiring and Is Processed into an Apoptotic Two-Chain Receptor in Peripheral Glia.
Neuron,
82(5), 1074–1087.
https://doi.org/10.1016/j.neuron.2014.04.022
Thomasen, P. B., Salasova, A., Kjaer-Sorensen, K., Woloszczuková, L., Lavický, J.
, Login, H., Tranberg-Jensen, J., Almeida, S., Beel, S., Kavková, M.
, Qvist, P., Kjolby, M., Ovesen, P. L., Nolte, S., Vestergaard, B., Udrea, A.-C., Nejsum, L. N., Chao, M. V., Van Damme, P.
... Nykjaer, A. (2023).
SorCS2 binds progranulin to regulate motor neuron development.
Cell Reports,
42(11), Artikel 113333.
https://doi.org/10.1016/j.celrep.2023.113333
Brodal, G. S., Lyngsø, R. B., Östlin, A.
& Pedersen, C. N. S. (2002).
Solving the String Statistics Problem in Time O(n log n). I P. Widmayer, S. Eidenbenz, F. Triguero, R. Morales, R. Conejo & M. Hennessy (red.),
Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings (s. 728-739). Springer.
https://doi.org/10.1007/3-540-45465-9_62
Hobisch, M., van Schie, M. M. C. H., Kim, J.
, Andersen, K. R., Alcalde, M., Kourist, R., Park, C. B., Hollmann, F.
& Kara, S. (2020).
Solvent‐Free Photobiocatalytic Hydroxylation of Cyclohexane.
ChemCatChem,
12(16), 4009-4013.
https://doi.org/10.1002/cctc.202000512
Vanwetswinkel, S., Kriek, J.
, Andersen, G. R., Guntert, P., Dijk, J., Canters, G. W. & Siegal, G. (2003).
Solution structure of the 162 residue C-terminal domain of human elongation factor 1Bgamma.
Journal of Biological Chemistry,
278, 43443-43451.
Kjærgaard, M., Gårdsvoll, H., Hirschberg, D., Nielbo, S., Mayasundari, A., Peterson, C. B., Jansson, A., Jørgensen, T. J. D., Poulsen, F. M. & Ploug, M. (2007).
Solution structure of recombinant somatomedin B domain from vitronectin produced in Pichia pastoris.
Protein Science,
16(9), 1934-45.
https://doi.org/10.1110/ps.072949607
Khan, S. A., Lopez-Chua, C. A., Zhang, J., Fischer, L. W.
, Sørensen, E. S. & Denhardt, D. T. (2002).
Soluble osteopontin inhibits apoptosis of adherent endothelial cells deprived of growth factors.
J. Cell. Biochem.,
85, 728-736.
Zhang, J., Song, L.
, Pedersen, D. V., Li, A., Lambris, J. D.
, Andersen, G. R., Mollnes, T. E., Ma, Y. J. & Garred, P. (2020).
Soluble collectin-12 mediates C3-independent docking of properdin that activates the alternative pathway of complement.
eLife,
9, 1-19. Artikel e60908.
https://doi.org/10.7554/eLife.60908
Holmstrup, M., Sørensen, J. G., Schmidt, I. K., Nielsen, P. L., Mason, S., Tietema, A., Smith, A. R.
, Bataillon, T., Beier, C.
& Ehlers, B. K. (2013).
Soil microarthropods are only weakly impacted after 13 years of repeated drought treatment in wet and dry heathland soils.
Soil Biology & Biochemistry,
66, 110-118.
https://doi.org/10.1016/j.soilbio.2013.06.023
Andersen, E. S., Nielsen, M. M., Dong, M., Besenbacher, F., Kjems, J. & Gothelf, K. V. (2008).
Software package for the design and analysis of DNA origami structures. Afhandling præsenteret på FNANO 2008, Snowbird, USA.
Wang, J., Jensen, U. B., Jensen, G. V., Shipovskov, S., Balakrishnan, V. S., Otzen, D., Pedersen, J. S., Besenbacher, F. & Sutherland, D. S. (2011).
Soft Interactions at Nanoparticles Alter Protein Function and Conformation in a Size Dependent Manner.
Nano Letters,
11(11), 4985-4991.
https://doi.org/10.1021/nl202940k
Christensen, S.
, Valnickova, Z., Thøgersen, I. B., Pizzo, S. V., Nielsen, H. R., Roepstorff, P.
& Enghild, J. J. (1995).
Sodium dodecyl sulfate-stable complexes between serpins and active or inactive proteinases contain the region COOH-terminal to the reactive site loop.
Journal of Biological Chemistry,
270(25), 14859-62.
Warrier, V., Toro, R., Won, H., Leblond, C. S., Cliquet, F., Delorme, R., De Witte, W., Bralten, J., Chakrabarti, B.
, Børglum, A. D., Grove, J., Poelmans, G., Hinds, D. A., Bourgeron, T.
& Baron-Cohen, S. (2019).
Social and non-social autism symptoms and trait domains are genetically dissociable.
Communications Biology,
2(1), Artikel 328.
https://doi.org/10.1038/s42003-019-0558-4
Li, S., Li, R., Li, H., Lu, J., Li, Y.
, Bolund, L., Schierup, M. H. & Wang, J. (2013).
SOAPindel: efficient identification of indels from short paired reads.
Genome Research,
23(1), 195-200.
https://doi.org/10.1101/gr.132480.111
Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J.
, Hedegaard, J., Cirera, S.
, Thomsen, B., Madsen, L. B., Høj, A., Vingborg, R., Bujie, Z., Wang, X., Wang, X. F., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M.
... Bendixen, C. (2007).
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
Bioinformatics,
23(13), i387-i391.
https://doi.org/10.1093/bioinformatics/btm192