Christensen, S.
, Valnickova, Z., Thøgersen, I. B., Pizzo, S. V., Nielsen, H. R., Roepstorff, P.
& Enghild, J. J. (1995).
Sodium dodecyl sulfate-stable complexes between serpins and active or inactive proteinases contain the region COOH-terminal to the reactive site loop.
Journal of Biological Chemistry,
270(25), 14859-62.
Warrier, V., Toro, R., Won, H., Leblond, C. S., Cliquet, F., Delorme, R., De Witte, W., Bralten, J., Chakrabarti, B.
, Børglum, A. D., Grove, J., Poelmans, G., Hinds, D. A., Bourgeron, T.
& Baron-Cohen, S. (2019).
Social and non-social autism symptoms and trait domains are genetically dissociable.
Communications Biology,
2(1), Artikel 328.
https://doi.org/10.1038/s42003-019-0558-4
Li, S., Li, R., Li, H., Lu, J., Li, Y.
, Bolund, L., Schierup, M. H. & Wang, J. (2013).
SOAPindel: efficient identification of indels from short paired reads.
Genome Research,
23(1), 195-200.
https://doi.org/10.1101/gr.132480.111
Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J.
, Hedegaard, J., Cirera, S.
, Thomsen, B., Madsen, L. B., Høj, A., Vingborg, R., Bujie, Z., Wang, X., Wang, X. F., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M.
... Bendixen, C. (2007).
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
Bioinformatics,
23(13), i387-i391.
https://doi.org/10.1093/bioinformatics/btm192
Zagari, N., Sandoval-Ibanez, O.
, Sandal, N., Su, J., Rodriguez-Conception, M.
, Stougaard, J., Pribil, M., Leister, D. & Pulido, P. (2017).
SNOWY COTYLEDON 2 Promotes Chloroplast Development and Has a Role in Leaf Variegation in Both Lotus japonicus and Arabidopsis thaliana.
Molecular Plant,
10(5), 721-734.
https://doi.org/10.1016/j.molp.2017.02.009
Damas, N. D., Marcatti, M., Côme, C.
, Christensen, L. L., Nielsen, M. M., Baumgartner, R., Gylling, H. M., Maglieri, G., Rundsten, C. F., Seemann, S. E., Rapin, N., Thézenas, S.
, Vang, S., Ørntoft, T., Andersen, C. L., Pedersen, J. S. & Lund, A. H. (2016).
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization.
Nature Communications,
7, 13875. Artikel 13875.
https://doi.org/10.1038/ncomms13875
Christensen, L.-L., True, K. K., Hamilton, M. P.
, Nielsen, M. M., Djodji Damas, N.
, Damgaard, C. K., Ongen, H., Dermitzakis, E. T., Bramsen, J.
, Pedersen, J. S., Lund, A. H., Vang, S., Stribolt, K., Madsen, M. R., Laurberg, S., McGuire, S.
, Ørntoft, T. F. & Andersen, C. L. (2016).
SNHG16 is regulated by the Wnt pathway in colorectal cancer and affects genes involved in lipid metabolism.
Molecular Oncology,
10(8), 1266-1282.
https://doi.org/10.1016/j.molonc.2016.06.003
Verboom, K., Everaert, C., Bolduc, N., Livak, K. J., Yigit, N., Rombaut, D., Anckaert, J., Lee, S.
, Venø, M. T., Kjems, J., Speleman, F., Mestdagh, P. & Vandesompele, J. (2019).
SMARTer single cell total RNA sequencing.
Nucleic Acids Research,
47(16), Artikel e93.
https://doi.org/10.1093/nar/gkz535
Mørup, N., Stakaitis, R., Golubickaite, I.
, Riera, M., Dalgaard, M. D.
, Schierup, M. H., Jørgensen, N., Daugaard, G., Juul, A. & Almstrup, K. (2021).
Small RNAs in Seminal Plasma as Novel Biomarkers for Germ Cell Tumors.
Cancers,
13(10), Artikel 2346.
https://doi.org/10.3390/cancers13102346
Daugaard, I., Venø, M. T., Yan, Y., Kjeldsen, T. E., Lamy, P., Hager, H., Kjems, J. & Hansen, L. L. (2017).
Small RNA sequencing reveals metastasis-related microRNAs in lung adenocarcinoma.
OncoTarget,
8(16), 27047-27061.
https://doi.org/10.18632/oncotarget.15968
Mortensen, M. R., Skovsgaard, M. B., Okholm, A. H., Scavenius, C., Dupont, D. M., Rosen, C. B., Enghild, J. J., Kjems, J. & Gothelf, K. V. (2018).
Small-Molecule Probes for Affinity-Guided Introduction of Biocompatible Handles on Metal-Binding Proteins.
Bioconjugate Chemistry,
29(9), 3016–3025.
https://doi.org/10.1021/acs.bioconjchem.8b00424
Bay, Y., Venskutonytė, R.
, Frantsen, S. M., Thorsen, T. S.
, Musgaard, M., Frydenvang, K., Francotte, P., Pirotte, B., Biggin, P. C.
, Kristensen, A. S., Boesen, T., Pickering, D. S.
, Gajhede, M. & Kastrup, J. S. (2024).
Small-molecule positive allosteric modulation of homomeric kainate receptors GluK1-3: development of screening assays and insight into GluK3 structure.
FEBS journal,
291(7), 1506-1529.
https://doi.org/10.1111/febs.17046
Rattan, S. I. S., Gonzalez-Dosal, R., Nielsen, E. R., Kraft, D. C., Weibel, J. & Kahns, S. (2004).
Slowing down aging from within: mechanistic aspects of anti-aging hormetic effects of mild heat stress on human cells.
Acta Biochimica Polonica,
51(2), 481-92.
Branscheid, A., Marchais, A., Schott, G., Lange, H., Gagliardi, D.
, Andersen, S. U., Voinnet, O. & Brodersen, P. (2015).
SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis.
Nucleic Acids Research,
43(22), 10975-10988.
https://doi.org/10.1093/nar/gkv1014
Juul-Madsen, K., Qvist, P., Bendtsen, K. L., Langkilde, A. E., Vestergaard, B.
, Howard, K., Dehesa-Etxebeste, M.
, Paludan, S. R., Andersen, G. R., Jensen, P. H., Otzen, D. E., Romero-Ramos, M. & Vorup-Jensen, T. (2020).
Size-Selective Phagocytic Clearance of Fibrillar α-Synuclein through Conformational Activation of Complement Receptor 4.
Journal of Immunology,
204(5), 1345-1361.
https://doi.org/10.4049/jimmunol.1900494
Larsen, E. K. U., Nielsen, T., Wittenborn, T., Birkedal, H., Vorup-Jensen, T., Jakobsen, M. H.
, Østergaard, L., Horsman, M. R., Besenbacher, F., Howard, K. A. & Kjems, J. (2009).
Size-Dependent Accumulation of PEGylated Silane-Coated Magnetic Iron Oxide Nanoparticles in Murine Tumors.
A C S Nano,
3(7), 1947-51.
https://doi.org/10.1021/nn900330m
Teodori, L., Omer, M., Märcher, A., Skaanning, M. K., Andersen, V. L., Nielsen, J. S., Oldenburg, E., Lin, Y., Gothelf, K. V. & Kjems, J. (2022).
Site-specific nanobody-oligonucleotide conjugation for super-resolution imaging.
Journal of Biological Methods,
9(1), Artikel e159.
https://doi.org/10.14440/jbm.2022.381
Jahn, K., Nielsen, M. M., Olsen, E. M., Mohammadzadegan, R.
, Andersen, E. S., Gothelf, K. V. & Kjems, J. (2009).
Site-specific labeling of long HIV-1 RNA using DNA templated chemistry. 84-88. Afhandling præsenteret på 6th Annual Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2009, Snowbird, UT, USA.
Jahn, K., Olsen, E. M., Nielsen, M. M., Tørring, T., Mohammadzadegan, R., Andersen, E. S., Gothelf, K. V. & Kjems, J. (2011).
Site-Specific Chemical Labeling of Long RNA Molecules.
Bioconjugate Chemistry,
22(1), 95-100.
https://doi.org/10.1021/bc100422k
Schmøkel, J., Voldum, A., Tsakiridou, G., Kuhlmann, M., Cameron, J.
, Sørensen, E. S., Wengel, J.
& Howard, K. (2017).
Site-selective conjugation of an anticoagulant aptamer to recombinant albumins and maintenance of neonatal Fc receptor binding.
Nanotechnology,
28(20), Artikel 204004 .
https://doi.org/10.1088/1361-6528/aa6a9b
Andersen, M. Ø., Nygaard, J. V., Burns, J. S.
, Raarup, M. K., Nyengaard, J. R., Bünger, C., Besenbacher, F., Howard, K. A., Kassem, M. & Kjems, J. (2010).
siRNA nanoparticle functionalization of nanostructured scaffolds enables controlled multilineage differentiation of stem cells.
Molecular Therapy,
18(11), 2018-2027.
https://doi.org/10.1038/mt.2010.166
Acosta-Jurado, S., Rodríguez-Navarro, D. N.
, Kawaharada, Y., Rodríguez-Carvajal, M. A., Gil-Serrano, A., Soria-Díaz, M. E., Pérez-Montaño, F., Fernández-Perea, J., Niu, Y., Alias-Villegas, C., Jiménez-Guerrero, I., Navarro-Gómez, P., López-Baena, F. J.
, Kelly, S., Sandal, N., Stougaard, J., Ruiz-Sainz, J. E. & Vinardell, J. M. (2019).
Sinorhizobium fredii HH103 nolR and nodD2 mutants gain capacity for infection thread invasion of Lotus japonicus Gifu and Lotus burttii.
Environmental Microbiology,
21(5), 1718-1739.
https://doi.org/10.1111/1462-2920.14584
Acosta-Jurado, S., Rodríguez-Navarro, D. N.
, Kawaharada, Y., Perea, J. F., Gil-Serrano, A.
, Jin, H., An, Q., Rodríguez-Carvajal, M. A.
, Andersen, S. U., Sandal, N., Stougaard, J., Vinardell, J. M. & Ruiz-Sainz, J. E. (2016).
Sinorhizobium fredii HH103 invades lotus burttii by crack entry in a nod factor-and surface polysaccharide-dependent manner.
Molecular plant-microbe interactions,
29(12), 925-937.
https://doi.org/10.1094/MPMI-09-16-0195-R
Fersht, A. R., Itzhaki, L. S., Elmasry, N. F., Matthews, J. M.
& Otzen, D. E. (1994).
Single versus parallel pathways of protein folding and fractional formation of structure in the transition state.
Proceedings of the National Academy of Sciences,
91(22), 10426-10429.
https://doi.org/10.1073/pnas.91.22.10426
Birkedal, V., Dong, M., Golas, M. M., Sander, B., Andersen, E. S., Gothelf, K. V., Besenbacher, F. & Kjems, J. (2011).
Single molecule microscopy methods for the study of DNA origami structures.
Microscopy Research and Technique,
74(7), 688-698.
https://doi.org/10.1002/jemt.20962
Horrocks, M. H., Rajah, L., Jönsson, P.
, Kjærgaard, M., Vendruscolo, M., Knowles, T. P. J. & Klenerman, D. (2013).
Single-molecule measurements of transient biomolecular complexes through microfluidic dilution.
Analytical Chemistry,
85(14), 6855-9.
https://doi.org/10.1021/ac4010875
Horrocks, M. H., Lee, S. F., Gandhi, S., Magdalinou, N. K., Chen, S. W., Devine, M. J., Tosatto, L.
, Kjaergaard, M., Beckwith, J. S., Zetterberg, H., Iljina, M., Cremades, N., Dobson, C. M., Wood, N. W. & Klenerman, D. (2016).
Single-molecule imaging of individual amyloid protein aggregates in human biofluids.
ACS Chemical Neuroscience,
7(3), 399–406.
https://doi.org/10.1021/acschemneuro.5b00324
Stougaard, M., Lohmann, J. S., Mancino, A., Celik, S.
, Andersen, F. F., Koch, J. & Knudsen, B. R. (2009).
Single-molecule detection of human topoisomerase I cleavage-ligation activity.
A C S Nano,
3(1), 223-33.
https://doi.org/10.1021/nn800509b
Voigt, N. V., Tørring, T., Rotaru, A., Jacobsen, M. F., Ravnsbæk, J. B., Subramani, R., Mamdouh, W., Kjems, J., Mokhir, A.
, Besenbacher, F. & Gothelf, K. V. (2010).
Single-molecule chemical reactions on DNA origami.
Nature Nanotechnology,
5(3), 200-203.
https://doi.org/10.1038/nnano.2010.5
Helmig, S. W., Rotaru, A., Arian, D., Kovbasyuk, L.
, Arnbjerg, J., Ogilby, P. R., Kjems, J., Mokhir, A.
, Besenbacher, F. & Gothelf, K. V. (2010).
Single Molecule Atomic Force Microscopy Studies of Photosensitized Singlet Oxygen Behavior on a DNA Origami Template.
A C S Nano,
4(12), 7475-7480.
https://doi.org/10.1021/nn102701f
Jepsen, M. D. E., Sørensen, R. S., Maffeo, C., Aksimentiev, A.
, Kjems, J. & Birkedal, V. (2019).
Single molecule analysis of structural fluctuations in DNA nanostructures.
Nanoscale,
11(39), 18475-18482.
https://doi.org/10.1039/c9nr03826d
Jensen, S. J., Harmsen, C., Nielsen, M. J.
, Stougaard, M., Leong, K. W.
, Knudsen, B. R. & Ho, Y.-P. (2013).
Single cell enzyme diagnosis on the chip.
International Conference on Micro Electro Mechanical Systems, 911 - 914.
https://doi.org/10.1109/MEMSYS.2013.6474392
Frank, M., Fechete, L. I., Tedeschi, F., Nadzieja, M., Nørgaard, M. M. M., Montiel, J., Andersen, K. R., Schierup, M. H., Reid, D. & Andersen, S. U. (2023).
Single-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus.
Nature Communications,
14(1), Artikel 7171.
https://doi.org/10.1038/s41467-023-42911-1
Oteri, F., Falconi, M., Chillemi, G.
, Andersen, F. F., Oliveira, C. L. P., Pedersen, J. S., Knudsen, B. R. & Desideri, A. (2011).
Simulative Analysis of a Truncated Octahedral DNA Nano-Cage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability.
Journal of Physical Chemistry Part C: Nanomaterials and Interfaces,
115(34), 16819-16827.
Keller, J. G., Mizielinski, K.
, Petersen, K. V., Stougaard, M., Knudsen, B. R. & Tesauro, C. (2022).
Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples.
Journal of visualized experiments : JoVE,
190, Artikel e64484.
https://doi.org/10.3791/64484