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İlyasoğlu, H., Nadzieja, M. & Guo, Z. (2019). Caffeic acid grafted chitosan as a novel dual-functional stabilizer for food-grade emulsions and additive antioxidant property. Food Hydrocolloids, 95(October), 168-176. https://doi.org/10.1016/j.foodhyd.2019.04.043

Østergaard, V. H., Bjergbæk, L., Skouboe, C., Giangiacomo, L., Knudsen, B. R. & Andersen, A. H. (2004). The tranducer domain is important for clamp operation in human DNA topoisomerase II alpha. Journal of Biological Chemistry, 279, 1684-1691.

Østergaard, V. H., Giangiacomo, L., Bjergbæk, L., Knudsen, B. R. & Andersen, A. H. (2004). Hindering the strand passage reaction of human topoisomerase II alpha without disturbing DNA cleavage, ATP hydrolysis or operation of the N-terminal clamp. Journal of Biological Chemistry, 279, 28093-28099.

Østergaard, V. H., Knudsen, B. R. & Andersen, A. H. (2004). Dissecting the cell killing mechanism of the topoisomerase II targeting drug ICRF-193. Journal of Biological Chemistry, 279, 28100-28105.

Østergaard, M., Pedersen, L., Schmidt, J., Luz, A., Lovmand, J., Erfle, V. & Pedersen, F. S. (1997). Mapping of a major osteomagenic determinant of murine leukemia virus RFB-14 to non-long terminal repeat sequences. Journal of Virology, 71(1), 645-649. http://jvi.asm.org/content/71/1/645.abstract

Ørom, U. A. V. (2020). Preface. Methods in Molecular Biology, 2161, v.

Ørntoft, M-B. W., Jensen, S. Ø., Hansen, T. B., Bramsen, J. B. & Andersen, C. L. (2017). Comparative analysis of 12 different kits for bisulfite conversion of circulating cell-free DNA. Epigenetics, 12(8), 626-636. https://doi.org/10.1080/15592294.2017.1334024

Ørning, L., Rian, A., Campbell, A., Brady, J., Fedosov, S., Bramlage, B., Thompson, K. & Quadros, E. V. (2006). Characterization of a monoclonal antibody with specificity for holo-transcobalamin. Nutr.Metab., 3, PMID:16393340.

Çelik, S. Ü., Akbey, Ü. ., Bozkurt, A., Graf, R. & Spiess, H. W. (2008). Proton-conducting properties of acid-doped poly(glycidyl methacrylate)-1,2,4-triazole systems. Macromolecular Chemistry and Physics, 209(6), 593-603. https://doi.org/10.1002/macp.200700457

Álvarez-Salvado, E., Pallarés, V., Moreno, A. & Canals, S. (2014). Functional MRI of long-term potentiation: Imaging network plasticity. Philosophical Transactions of the Royal Society B: Biological Sciences. https://doi.org/10.1098/rstb.2013.0152

Álvarez-Cienfuegos, A., Alanes, N. N. D. P., Compte, M., Cuesta, À. M., Blanco-Toribio, A., Harwood, S. L., Villate, M., Merino, N., Bonet, J., Navarro, R., Muñoz-Briones, C., Sørensen, K. M. J., Mølgaard, K., Oliva, B., Sanz, L., Blanco, F. J. & Álvarez-Vallina, L. (2016). Intramolecular trimerization, a novel strategy for making multispecific antibodies with controlled orientation of the antigen binding domains. Scientific Reports, 6, [28643]. https://doi.org/10.1038/srep28643

von Philipsborn, A. (2018). Neurobiology of insect behavior. I A. Córdoba-Aguilar, D. González-Tokman & I. González-Santoyo (red.), Insect Behavior: From Mechanisms to Ecological and Evolutionary Consequences (1 udg., s. 32-48). Oxford University Press.

van der Wal, D. E., Du, V. X., Lo, KS., Rasmussen, J. T., Verhoef, S. & Akkerman, J. W. N. (2010). Platelet apoptosis by cld-induced glycoportein Ibα clustering. Journal of Thrombosis and Haemostasis, 8(11), 2554-2562. https://doi.org/10.1111/j.1538-7836.2010.04043.x

van Gils, J. H. M., van Dijk, E., Peduzzo, A., Hofmann, A., Vettore, N., Schützmann, M. P., Groth, G., Mouhib, H., Otzen, D. E., Buell, A. K. & Abeln, S. (2020). The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth. PLOS Computational Biology, 16(5), [e1007767]. https://doi.org/10.1371/journal.pcbi.1007767

van Diggelen, F., Tepper, A., Petri, M. & Otzen, D. (2017). α-Synuclein Oligomers: A Study in Diversity. Israel Journal of Chemistry, 57(7-8), 699-723. https://doi.org/10.1002/ijch.201600116

van Diggelen, F., Hrle, D., Apetri, M., Christiansen, G., Rammes, G., Tepper, A. & Otzen, D. E. (2019). Two conformationally distinct α-synuclein oligomers share common epitopes and the ability to impair long-term potentiation. PLOS ONE, 14(3), [0213663]. https://doi.org/10.1371/journal.pone.0213663

van Diggelen, F., Frank, S. A., Somavarapu, A. K., Scavenius, C., Apetri, M. M., Nielsen, J., Tepper, A. W. J. W., Enghild, J. J. & Otzen, D. E. (2020). The interactome of stabilized α-synuclein oligomers and neuronal proteins. The FEBS Journal, 287(10), 2037-2054. https://doi.org/10.1111/febs.15124

la Cour, T. F., Nyborg, J., Thirup, S. & Clark, B. F. (1985). Structural details of the binding of guanosine diphosphate to elongation factor Tu from E. coli as studied by X-ray crystallography. E M B O Journal, 4(9), 2385-8.

del Ferraro, G., Moreno, A., Min, B., Morone, F., Pérez-Ramírez, Ú., Pérez-Cervera, L., Parra, L. C., Andrei, H., Canals, S. & Makse, H. A. (2018). Finding influential nodes for integration in brain networks using optimal percolation theory. Nature Communications, 9, [2274]. https://doi.org/10.1038/s41467-018-04718-3

de Toda, I. M., Rattan, S., De la Feunte, M. & Arranz, L. (2021). Female mice reaching exceptionally high old age have preserved 20S proteasome activities. Antioxidants, 10(9), [1397]. https://doi.org/10.3390/antiox10091397

de Souza-Pinto, N. C., Eide, L., Hogue, B. A., Thybo, T., Stevnsner, T., Klungland, A., Seeberg, E. & Bohr, V. (2001). Repair of 8-oxodeoxyguanosine lesions in mitochrondrial DNA depends on oxoguanine DNA glycosylase (OGG1) gene and 8-oxoguanine accumulates in the mitochondrial DNA of OGG1-defective mice. Cancer Research, 61, 5378-5381.

de Souza-Pinto, N., A. Mason, P., Hashiguchi, K., Weismann, L., Tian, J., Guay, D., Lebel, M., Stevnsner, T. V., Rasmussen, L. J. & Bohr, V. (2009). Novel DNA mismatch-repair activity involving YB-1 in human mitochondria. D N A Repair, 8(6), 704-719.

de Melo Costa, V. R., Pfeuffer, J., Louloupi, A., Ørom, U. A. V. & Piro, R. M. (2021). SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency. BMC Bioinformatics, 22(1), [368]. https://doi.org/10.1186/s12859-021-04282-6

de Ford , C., Calderon, C., Sehgal, P., Fedosova, N., Murillo, R., Olesen, C., Nissen, P., Møller, J. V. & Merfort, I. (2015). Discovery of Tricyclic Clerodane Diterpenes as Sarco/Endoplasmic Reticulum Ca(2+)-ATPase Inhibitors and Structure-Activity Relationships. Journal of Natural Products, 78 (6), 1262–1270.

de Diego, I., Ksiazek, M., Mizgalska, D., Koneru, L., Golik, P., Szmigielski, B., Nowak, M., Nowakowska, Z., Potempa, B., Houston, J. A., Enghild, J. J., Thøgersen, I. B., Gao, J., Kwan, A. H., Trewhella, J., Dubin, G., Gomis-Rüth, F. X., Nguyen, K-A. & Potempa, J. (2016). The outer-membrane export signal of Porphyromonas gingivalis type IX secretion system (T9SS) is a conserved C-terminal β-sandwich domain. Scientific Reports, 6, 23123. https://doi.org/10.1038/srep23123

da Silva, A. P. B., Ellen, R. P., Sørensen, E. S., Goldberg, H. A., Zohar, R. & Sodek, J. (2009). Osteopontin attenuation of dextran sulfate sodium-induced colitis in mice. Laboratory Investigation, 89(10), 1169-81.

Zárate, S., Stevnsner, T. V. & Gredilla, R. (2017). Role of Estrogen and Other Sex Hormones i Brain Aging. Neuroprotection and DNA Repair. Frontiers in Aging Neuroscience, 9, [430]. https://doi.org/10.3389/fnagi.2017.00430

Zwieb, C., Nakao, Y., Nakashima, T., Takagi, H., Goda, S., Andersen, E. S., Kakuta, Y. & Kimura, M. (2011). Structural modeling of RNase P RNA of the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biochemical and Biophysical Research Communications, 414(3), 517-522. https://doi.org/10.1016/j.bbrc.2011.09.098

Zuccaro, L., Tesauro, C., Cerroni, B., Ottaviani, A., Knudsen, B. R., Balasubramanian, K. & Desideri, A. (2014). Rolling circle amplification based detection of human topoisomerase I activity on magnetic beads. Analytical Biochemistry, 451, 42-44. https://doi.org/10.1016/j.ab.2014.02.003

Zuccaro, L., Tesauro, C., Kurkina, T., Fiorani, P., Ki Yu, H., Knudsen, B. R., Kern, K., Desideri, A. & Balasubramanian, K. (2015). Real-Time Label-Free Direct Electronic Monitoring of Topoisomerase Enzyme Binding Kinetics on Graphene. ACS Nano, 9(11), 11166-11176. https://doi.org/10.1021/acsnano.5b05709

Zou, L., Luo, Y., Chen, M., Wang, G., Ding, M., Petersen, C. C., Kang, R., Dagnaes-Hansen, F., Zeng, Y., Lv, N., Ma, Q., Le, D. Q. S., Besenbacher, F., Bolund, L., Jensen, T. G., Kjems, J., Pu, W. T. & Bünger, C. (2013). A simple method for deriving functional MSCs and applied for osteogenesis in 3D scaffolds. Scientific Reports, 3, [2243]. https://doi.org/10.1038/srep02243

Zocher, G., Vilstrup, J., Heine, D., Hallab, A., Goralski, E., Hertweck, C., Stahl, M., Schäberle, T. F. & Stehle, T. (2015). Structural basis of head to head polyketide fusion by CorB. Chemical Science, 6(11), 6525-6536. https://doi.org/10.1039/c5sc02488a

Zhukov, V., Radutoiu, S., Madsen, L. H., Rychagova, T., Ovchinnikova, E., Borisov, A., Tikhonovich, I. & Stougaard, J. (2008). The pea Sym37 receptor kinase gene controls infection-thread initiation and nodule development. Molecular Plant - Microbe Interactions, 21(12), 1600-8. https://doi.org/10.1094/MPMI-21-12-1600

Zhukov, V. A., Borisov, A. Y., Kuznetsova, E. V., Madsen, L. H., Moffet, M. D., Ovchinnikova, E. S., Pinaev, A. G., Radutoiu, S., Rozov, S. M., Rychagova, T. S., Shtark, O. Y., Tsyganov, V. E., Voroshilova, V. A., Stougaard, J., Weeden, N. F. & Tikhonovich, I. A. (2008). GENOME SYNTENY OF PEA AND MODEL LEGUMES: FROM MUTATION THROUGH GENETIC MAPPING TO THE GENES. I FD. Dakora, SBM. Chimphango, AJ. Valentine, C. Elmerich & WE. Newton (red.), BIOLOGICAL NITROGEN FIXATION: TOWARDS POVERTY ALLEVIATION THROUGH SUSTAINABLE AGRICULTURE (s. 223-224). Springer.

Zhu, J., Zhang, Y., Ghosh, A., Cuevas, R. A., Forero, A., Dhar, J., Ibsen, M. S., Schmid-Burgk, J. L., Schmidt, T., Ganapathiraju, M. K., Fujita, T., Hartmann, R., Barik, S., Hornung, V., Coyne, C. B. & Sarkar, S. N. (2014). Antiviral activity of human OASL protein is mediated by enhancing signaling of the RIG-I RNA sensor. Immunity, 40(6), 936-948. https://doi.org/10.1016/j.immuni.2014.05.007

Zhou, J., Shi, J., Hou, J., Zang, Y., Rasmussen, J. T., Heegaard, C. W. & Gilbert, G. E. (2010). Phosphatidylserine exposure and procoagulant activity in acute promyelocytic leukemia. Journal of Thrombosis and Haemostasis, 8, 773–782.

Zhou, Z., Hamming, O. J., Ank, N., Paludan, S. R., Nielsen, A. L., Hartmann, R. & Nielsen, A. L. (2007). Type III interferon (IFN) induces a type I IFN-like response in a restricted subset of cells through signaling pathways involving both the Jak-STAT pathway and the mitogen-activated protein kinases. Journal of Virology, 81(14), 7749-7758. https://doi.org/10.1128/JVI.02438-06

Zhou, H., Terczynska-Dyla, E., Mohlenberg, M., Gad, H. H. & Hartmann, R. (2017). Characterization of IFNL4 promoters from different species. Cytokine, 100, 143.

Zhou, H., Møhlenberg, M., Terczyńska-Dyla, E., Winther, K. G., Hansen, N. H., Vad-Nielsen, J., Laloli, L., Dijkman, R., Nielsen, A. L., Gad, H. H. & Hartmann, R. (2020). The IFNL4 Gene Is a Noncanonical Interferon Gene with a Unique but Evolutionarily Conserved Regulation. Journal of Virology, 94(5), e01535-19. https://doi.org/10.1128/JVI.01535-19

Zhong, Y., Sagnelli, D., Topbjerg, H. B., Hasler-Sheetal, H., Andrzejczak, O. A., Hooshmand, K., Gislum, R., Jiang, D., Møller, I. M., Blennow, A. & Hebelstrup, K. H. (2020). Expression of starch-binding factor CBM20 in barley plastids controls the number of starch granules and the level of CO2 fixation. Journal of Experimental Botany, 71(1), 234-246. https://doi.org/10.1093/jxb/erz401

Zhao, Z., Andersen, S. U., Ljung, K., Dolezal, K., Miotk, A., Schultheiss, S. J. & Lohmann, J. U. (2010). Hormonal control of the shoot stem-cell niche. Nature, 465(7301), 1089-92. https://doi.org/10.1038/nature09126

Zhao, B., Xu, P., Jiang, L., Paaske, B., Kromann-Hansen, T., Jensen, J. K., Sørensen, H. P., Liu, Z., Nielsen, J. T., Christensen, A., Hosseini, M., Sørensen, K. K., Nielsen, N. C., Jensen, K. J., Huang, M. & Andreasen, P. A. (2014). A cyclic peptidic serine protease inhibitor: increasing affinity by increasing Peptide flexibility. PLOS ONE, 9(12), [e115872]. https://doi.org/10.1371/journal.pone.0115872

Zhang, Z., Olsen, E. M., Kryger, M., Voigt, N. V., Tørring, T., Gültekin, E., Nielsen, M., MohammadZadegan, R., Andersen, E. S., Nielsen, M. M., Kjems, J., Birkedal, V. & Gothelf, K. V. (2011). A DNA tile actuator with eleven discrete states. Angewandte Chemie International Edition, 50(17), 3983-7. https://doi.org/10.1002/anie.201007642

Zhang, S., Andreasen, M., Nielsen, J. T., Liu, L., Nielsen, E. H., Song, J., Ji, G., Sun, F., Skrydstrup, T., Besenbacher, F., Nielsen, N. C., Otzen, D. E. & Dong, M. (2013). Coexistence of ribbon and helical fibrils originating from hIAPP20-29 revealed by quantitative nanomechanical atomic force microscopy. PNAS (Proceedings of the National Academy of Sciences of the United States of America), 110(8), 2798-2803. https://doi.org/10.1073/pnas.1209955110

Zhang, H., Wang, W-Q., Liu, S-J., Møller, I. M. & Song, S-Q. (2015). Proteome Analysis of Poplar Seed Vigor. PLOS ONE, 10(7), [e0132509]. https://doi.org/10.1371/journal.pone.0132509

Zhang, X., Bajic, G., Andersen, G. R., Christiansen, S. H. & Vorup-Jensen, T. (2016). The cationic peptide LL-37 binds Mac-1 (CD11b/CD18) with a low dissociation rate and promotes phagocytosis. B B A - Proteins and Proteomics. https://doi.org/10.1016/j.bbapap.2016.02.013

Zhang, Y-X., Xu, H-H., Liu, S-J., Li, N., Wang, W-Q., Moller, I. M. & Song, S-Q. (2016). Proteomic Analysis Reveals Different Involvement of Embryo and Endosperm Proteins during Aging of Yliangyou 2 Hybrid Rice Seeds. Frontiers in Plant Science, 7, [1394]. https://doi.org/10.3389/fpls.2016.01394

Zhang, M., Lykke-Andersen, S., Zhu, B., Xiao, W., Hoskins, J. W., Zhang, X., Rost, L. M., Collins, I., Bunt, M. V. D., Jia, J., Parikh, H., Zhang, T., Song, L., Jermusyk, A., Chung, C. C., Zhu, B., Zhou, W., Matters, G. L., Kurtz, R. C. ... Amundadottir, L. (2018). Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues. Gut, 67(3), 521-533. https://doi.org/10.1136/gutjnl-2016-313146

Zhang, N., Rao, R. S. P., Salvato, F., Havelund, J. F., Møller, I. M., Thelen, J. J. & Xu, D. (2018). MU-LOC: A machine-learning method for predicting mitochondrially localized proteins in plants. Frontiers in Plant Science, 9, [634]. https://doi.org/10.3389/fpls.2018.00634

Zhang, Y., Bærentsen, R. L., Fuhrer, T., Sauer, U., Gerdes, K. & Brodersen, D. E. (2019). (p)ppGpp Regulates a bacterial nucleosidase by an allosteric two-domain switch. Molecular Cell, 74(6), 1239-1249.e4. https://doi.org/10.1016/j.molcel.2019.03.035

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Revideret 25.10.2021 -

Lisbeth Heilesen