Zuzic, L., Stange, A. D., Bavnhøj, L., Driller, J. H., Schiøtt, B. & Pedersen, B. P. (2023).
Sweet and sour transport: Simulation insights into H+/sugar symport in plants.
Biophysical journal,
122(3S1), 197a.
https://doi.org/10.1016/j.bpj.2022.11.1201
Zhang, X., Galenkamp, N. S., Heide, N. J. V. D.
, Valero Moreno, J., Maglia, G.
& Kjems, J. (2023).
Specific Detection of Proteins by a Nanobody-Functionalized Nanopore Sensor.
ACS Nano.
https://doi.org/10.1021/acsnano.2c12733
Wedge, E.
, Ahmadov, U., Hansen, T. B., Gao, Z., Tulstrup, M., Côme, C., Nonavinkere Srivatsan, S., Ahmed, T., Jespersen, J. S., Schlotmann, B. C., Schöllkopf, C., Raaschou-Jensen, K., Ødum, N.
, Kjems, J., Bak, R. O., Walter, M. J., Grønbæk, K.
& Kristensen, L. S. (2023).
Impact of U2AF1 mutations on circular RNA expression in myelodysplastic neoplasms.
Leukemia,
37(5), 1113-1125.
https://doi.org/10.1038/s41375-023-01866-4
Tolomeo, D., Traversa, D., Venuto, S.
, Ebbesen, K., Garcia Rodriguez, J. L., Tamma, G., Ranieri, M., Simonetti, G., Ghetti, M., Paganelli, M., Visci, G., Liso, A., Kok, K., Muscarella, L. A., Fabrizio, F. P., Frassanito, M. A., Lamanuzzi, A., Saltarella, I., Solimando, A. G. ... Storlazzi, C. T. (2023).
circPVT1 and PVT1/AKT3 show a role in cell proliferation, apoptosis, and tumor subtype-definition in Small Cell Lung Cancer.
Genes, Chromosomes & Cancer,
62(7), 377-391.
https://doi.org/10.1002/gcc.23121
Taleski, M., Chapman, K., Novák, O., Schmülling, T.
, Frank, M. & Djordjevic, M. A. (2023).
CEP peptide and cytokinin pathways converge on CEPD glutaredoxins to inhibit root growth.
Nature Communications,
14(1), [1683].
https://doi.org/10.1038/s41467-023-37282-6
Somavarapu, A. K., Kleijwegt, G.
, Nagaraj, M., Alam, P., Nielsen, J. & Otzen, D. E. (2023).
Drug repurposing screens identify compounds that inhibit α-synuclein oligomers' membrane disruption and block antibody interactions.
Chemical Science,
14(11), 3030-3047.
https://doi.org/10.1039/d2sc05534a
Skovbjerg, C. K., Angra, D., Robertson-Shersby-Harvie, T., Kreplak, J., Keeble-Gagnère, G., Kaur, S., Ecke, W., Windhorst, A., Nielsen, L. K., Schiemann, A., Knudsen, J., Gutierrez, N., Tagkouli, V.
, Fechete, L. I., Janss, L., Stougaard, J., Warsame, A., Alves, S., Khazaei, H.
... Andersen, S. U. (2023).
Genetic analysis of global faba bean diversity, agronomic traits and selection signatures.
Theoretical and Applied Genetics,
136(5), [114].
https://doi.org/10.1007/s00122-023-04360-8
Seeler, S., Andersen, M. S., Sztanka-Toth, T., Rybiczka-Tešulov, M., van den Munkhof, M. H.
, Chang, C. C., Maimaitili, M., Venø, M. T., Hansen, T. B., Pasterkamp, R. J., Rybak-Wolf, A.
, Denham, M., Rajewsky, N.
, Kristensen, L. S. & Kjems, J. (2023).
A Circular RNA Expressed from the FAT3 Locus Regulates Neural Development.
Molecular Neurobiology,
60, 3239–3260.
https://doi.org/10.1007/s12035-023-03253-7
Salimi, M., Ayene, F., Parsazadegan, T.
, Nazari, M., Jamali, Y. & Raoufy, M. R. (2023).
Nasal airflow promotes default mode network activity.
Respiratory Physiology and Neurobiology,
307, [103981].
https://doi.org/10.1016/j.resp.2022.103981
Rübsam, H., Krönauer, C., Abel, N. B., Ji, H., Lironi, D., Hansen, S. B., Nadzieja, M., Kolte, M. V., Abel, D., de Jong, N., Madsen, L. H., Liu, H., Stougaard, J., Radutoiu, S. & Andersen, K. R. (2023).
Nanobody-driven signaling reveals the core receptor complex in root nodule symbiosis.
Science (New York, N.Y.),
379(6629), 272-277.
https://doi.org/10.1126/science.ade9204
Reinhold, D., Farztdinov, V.
, Yan, Y., Meisel, C., Sadlowski, H., Kühn, J., Perschel, F. H., Endres, M., Düzel, E., Vielhaber, S., Guttek, K., Goihl, A., Venø, M., Teegen, B., Stöcker, W., Stubbemann, P., Kurth, F., Sander, L. E., Ralser, M. ... Körtvelyessy, P. (2023).
The brain reacting to COVID-19: analysis of the cerebrospinal fluid proteome, RNA and inflammation.
Journal of Neuroinflammation,
20, [30].
https://doi.org/10.1186/s12974-023-02711-2
Rasmussen, C. B., Scavenius, C., Thøgersen, I. B., Harwood, S. L., Larsen, Ø., Bjerga, G. E. K.
, Stougaard, P., Enghild, J. J. & Thøgersen, M. S. (2023).
Characterization of a novel cold-adapted intracellular serine protease from the extremophile Planococcus halocryophilus Or1.
Frontiers in Microbiology,
14, [1121857].
https://doi.org/10.3389/fmicb.2023.1121857
Rasmussen, H. Ø., Kumar, A., Shin, B., Stylianou, F., Sewell, L., Xu, Y.
, Otzen, D. E., Pedersen, J. S. & Matthews, S. J. (2023).
FapA is an Intrinsically Disordered Chaperone for Pseudomonas Functional Amyloid FapC.
Journal of Molecular Biology,
435(2), [167878].
https://doi.org/10.1016/j.jmb.2022.167878
Pirhaghi, M., Najarzadeh, Z., Moosavi-Movahedi, F., Shafizadeh, M., Mamashli, F., Atarod, D., Ghasemi, A., Morshedi, D., Meratan, A. A.
, Otzen, D. E. & Saboury, A. A. (2023).
The anti-platelet drug ticlopidine inhibits FapC fibrillation and biofilm production: Highlighting its antibiotic activity.
B B A - Proteins and Proteomics,
1871(2), 140883. [140883].
https://doi.org/10.1016/j.bbapap.2022.140883
Pedersen, M. L., Pedersen, D. V., Winkler, M. B. L., Olesen, H. G., Søgaard, O. S., Østergaard, L., Laursen, N. S., Rahimic, A. H. F. & Tolstrup, M. (2023).
Nanobody-mediated complement activation to kill HIV-infected cells.
EMBO Molecular Medicine,
15(4), [e16422].
https://doi.org/10.15252/emmm.202216422
Mühleip, A.
, Flygaard, R. K., Baradaran, R., Haapanen, O., Gruhl, T., Tobiasson, V., Marechal, A., Sharma, V. & Amunts, A. (2023).
Structural basis of mitochondrial membrane bending by the I-II-III2-IV2 supercomplex.
Nature,
615, 934-938.
https://www.nature.com/articles/s41586-023-05817-y#Abs1
Myrup Holst, C., Brøndum Andersen, N., Thinggaard, V., Tilken, M.
, Lautrup, S., Tesauro, C. & Stevnsner, T. (2023).
Phosphorylation of the Human DNA Glycosylase NEIL2 Is Affected by Oxidative Stress and Modulates Its Activity.
Antioxidants,
12(2), [355].
https://doi.org/10.3390/antiox12020355
Mustamin, Y.
, Akyol, T. Y., Gordon, M., Manggabarani, A. M., Isomura, Y., Kawamura, Y., Bamba, M., Williams, C.
, Andersen, S. U. & Sato, S. (2023).
FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus.
Plant Physiology,
191(2), 1138-1152.
https://doi.org/10.1093/plphys/kiac533
Mohammad-Beigi, H., Wijaya, W., Madsen, M.
, Hayashi, Y., Li, R., Maria Rovers, T. A., Jæger, T. C., Buell, A. K., Hougaard, A. B., Kirkensgaard, J. J. K., Westh, P., Ipsen, R. & Svensson, B. (2023).
Association of caseins with β-lactoglobulin influenced by temperature and calcium ions: A multi-parameter analysis.
Food Hydrocolloids,
137, [108373].
https://doi.org/10.1016/j.foodhyd.2022.108373
Manjunath, L., Oh, S., Ortega, P., Bouin, A., Bournique, E., Sanchez, A.
, Martensen, P. M., Auerbach, A. A., Becker, J. T., Seldin, M., Harris, R. S., Semler, B. L. & Buisson, R. (2023).
APOBEC3B drives PKR-mediated translation shutdown and protects stress granules in response to viral infection.
Nature Communications,
14(1), [820].
https://doi.org/10.1038/s41467-023-36445-9
Li, Z., Anankanbil, S., Li, L., Lyu, J.
, Nadzieja, M. & Guo, Z. (2023).
Alkylsuccinylated oxidized cellulose-based amphiphiles as a novel multi-purpose ingredient for stabilizing O/W emulsions.
Food Hydrocolloids,
134, [108014].
https://doi.org/10.1016/j.foodhyd.2022.108014
Li, Z., Anankanbil, S., Pedersen, J. N., Nadzieja, M. & Guo, Z. (2023).
Nanocellulose fractionated from TEMPO-mediated oxidation of cellulose as an energy-free ingredient for stabilizing Pickering emulsion.
Biochemical Engineering Journal,
191, [ 108795].
https://doi.org/10.1016/j.bej.2022.108795
Kurihara, Y., Ekimoto, T., Gordon, C. T., Uchijima, Y., Sugiyama, R.
, Kitazawa, T., Iwase, A., Kotani, R., Asai, R., Pingault, V., Ikeguchi, M., Amiel, J. & Kurihara, H. (2023).
Mandibulofacial dysostosis with alopecia results from ETAR gain-of-function mutations via allosteric effects on ligand binding.
Journal of Clinical Investigation,
133(4).
https://doi.org/10.1172/JCI151536
Książek, M., Goulas, T., Mizgalska, D., Rodríguez-Banqueri, A., Eckhard, U., Veillard, F., Waligórska, I., Benedyk-Machaczka, M., Sochaj-Gregorczyk, A. M., Madej, M.
, Thøgersen, I. B., Enghild, J. J., Cuppari, A., Arolas, J. L., de Diego, I., López-Pelegrín, M., Garcia-Ferrer, I., Guevara, T., Dive, V. ... Gomis-Rüth, F. X. (2023).
A unique network of attack, defence and competence on the outer membrane of the periodontitis pathogen Tannerella forsythia.
Chemical Science,
14(4), 869-888.
https://doi.org/10.1039/d2sc04166a
Khatibi, V. A., Rahdar, M., Rezaei, M., Davoudi, S.
, Nazari, M., Mohammadi, M., Raoufy, M. R., Mirnajafi-Zadeh, J., Hosseinmardi, N., Behzadi, G. & Janahmadi, M. (2023).
The Glycolysis Inhibitor 2-Deoxy-d-Glucose Exerts Different Neuronal Effects at Circuit and Cellular Levels, Partially Reverses Behavioral Alterations and does not Prevent NADPH Diaphorase Activity Reduction in the Intrahippocampal Kainic Acid Model of Temporal Lobe Epilepsy.
Neurochemical Research,
48(1), 210-228.
https://doi.org/10.1007/s11064-022-03740-8
Jayakodi, M., Golicz, A. A., Kreplak, J.
, Fechete, L. I., Angra, D., Bednář, P.
, Bornhofen, E., Zhang, H., Boussageon, R., Kaur, S., Cheung, K., Čížková, J., Gundlach, H., Hallab, A., Imbert, B., Keeble-Gagnère, G., Koblížková, A., Kobrlová, L., Krejčí, P.
... Andersen, S. U. (2023).
The giant diploid faba genome unlocks variation in a global protein crop.
Nature,
615(7953), 652-659.
https://doi.org/10.1038/s41586-023-05791-5
Hourfar, H., Aliakbari, F., Aqdam, S. R., Nayeri, Z., Bardania, H.
, Otzen, D. E. & Morshedi, D. (2023).
The impact of α-synuclein aggregates on blood-brain barrier integrity in the presence of neurovascular unit cells.
International Journal of Biological Macromolecules,
229, 305-320.
https://doi.org/10.1016/j.ijbiomac.2022.12.134
Fruergaard, M. U., Nielsen, C. J. F., Kjeldsen, C. R., Iversen, L., Andersen, J. L. & Nissen, P. (2023).
Activation and inhibition of the C-terminal kinase domain of p90 ribosomal S6 kinases.
Life science alliance,
6(5).
https://doi.org/10.26508/lsa.202201425
Ferapontov, A., Omer, M., Baudrexel, I.
, Nielsen, J. S., Dupont, D. M., Juul-Madsen, K., Steen, P., Eklund, A. S.
, Thiel, S., Vorup-Jensen, T., Jungmann, R.
, Kjems, J. & Degn, S. E. (2023).
Antigen footprint governs activation of the B cell receptor.
Nature Communications,
14(1), [976].
https://doi.org/10.1038/s41467-023-36672-0
Dehdar, K., Mooziri, M., Samii Moghaddam, A., Salimi, M.
, Nazari, M., Dehghan, S., Jamaati, H., Salimi, A. & Raoufy, M. R. (2023).
Corticosteroid treatment attenuates anxiety and mPFC-amygdala circuit dysfunction in allergic asthma.
Life Sciences,
315, [121373].
https://doi.org/10.1016/j.lfs.2023.121373
Cordiner, R. A., Dou, Y., Thomsen, R., Bugai, A., Granneman, S.
& Heick Jensen, T. (2023).
Temporal-iCLIP captures co-transcriptional RNA-protein interactions.
Nature Communications,
14(1), [696].
https://doi.org/10.1038/s41467-023-36345-y
Christensen, B., Nielsen, N. R., Sørensen, M. R., Jacobsen, L. N.
, Ostenfeld, M. S. & Sørensen, E. S. (2023).
Naturally Occurring N-Terminal Fragments of Bovine Milk Osteopontin Are Transported across Models of the Intestinal Barrier.
Biomedicines,
11(3).
https://doi.org/10.3390/biomedicines11030893
Busato, S., Gordon, M., Chaudhari, M.
, Thorsgaard Jensen, I., Akyol, T. Y., Andersen, S. U. & Williams, C. (2023).
Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies.
Current Opinion in Plant Biology,
71, [102326].
https://doi.org/10.1016/j.pbi.2022.102326
Bohr, F., Bohr, S. S. R., Mishra, N. K.
, González-Foutel, N. S., Pinholt, H. D.
, Wu, S., Nielsen, E. M.
, Zhang, M., Kjaergaard, M., Jensen, K. J. & Hatzakis, N. S. (2023).
Enhanced hexamerization of insulin via assembly pathway rerouting revealed by single particle studies.
Communications Biology,
6(1), [178].
https://doi.org/10.1038/s42003-022-04386-6
Amstrup, S. K., Ong, S. C., Sofos, N., Karlsen, J. L., Skjerning, R. B., Boesen, T., Enghild, J. J., Hove-Jensen, B. & Brodersen, D. E. (2023).
Structural remodelling of the carbon-phosphorus lyase machinery by a dual ABC ATPase.
Nature Communications,
14, [1001].
https://doi.org/10.1038/s41467-023-36604-y