Yang, A., Bofill-De Ros, X., Stanton, R., Shao, T. J., Villanueva, P. & Gu, S. (2022). TENT2, TUT4, and TUT7 selectively regulate miRNA sequence and abundance. Nature Communications, 13(1), Artikel 5260. https://doi.org/10.1038/s41467-022-32969-8

Yang, A., Bofill-De Ros, X., Shao, T. J., Jiang, M., Li, K., Villanueva, P., Dai, L. & Gu, S. (2019). 3′ Uridylation Confers miRNAs with Non-canonical Target Repertoires. Molecular Cell, 75(3), 511-522.e4. https://doi.org/10.1016/j.molcel.2019.05.014

Yang, A., Shao, T. J., Bofill-De Ros, X., Lian, C., Villanueva, P., Dai, L. & Gu, S. (2020). AGO-bound mature miRNAs are oligouridylated by TUTs and subsequently degraded by DIS3L2. Nature Communications, 11(1), Artikel 2765. https://doi.org/10.1038/s41467-020-16533-w

Yan, Y., Wang, X., Venø, M. T., Bakholdt, V., Sørensen, J. A., Krogdahl, A., Sun, Z., Gao, S. & Kjems, J. (2017). Circulating miRNAs as biomarkers for oral squamous cell carcinoma recurrence in operated patients. OncoTarget, 8(5), 8206-8214. https://doi.org/10.18632/oncotarget.14143

Yan, X., Wang, Z., Westberg-Rasmussen, S., Tarbier, M., Rathjen, T., Tattikota, S. G., Peck, B. C. E., Kanke, M., Oxvig, C., Frystyk, J., Starup-Linde, J., Sethupathy, P., Friedländer, M. R., Gregersen, S. & Poy, M. N. (2017). Differential impact of glucose administered intravenously and orally on circulating miR-375 levels in human subjects. Journal of Clinical Endocrinology and Metabolism, 102(10), 3749-3755. https://doi.org/10.1210/jc.2017-01365

Yan, Y., Chang, C. C., Venø, M. T., Mothershead, C. R., Su, J. & Kjems, J. (2019). Isolating, Sequencing and Analyzing Extracellular MicroRNAs from Human Mesenchymal Stem Cells. Journal of visualized experiments : JoVE, 2019(145), Artikel e58655. https://doi.org/10.3791/58655

Yan, Y., Chang, C., Su, J., Venø, M. T. & Kjems, J. (2020). Osteoblastogenesis Alters Small RNA Profiles in EVs Derived from Bone Marrow Stem Cells (BMSCs) and Adipose Stem Cells (ASCs). Biomedicines, 8(10), 1-17. Artikel 387. https://doi.org/10.3390/biomedicines8100387

Yan, Y., Gu, T., Christensen, S. D. K., Su, J., Lassen, T. R., Hjortbak, M. V., Lo, I., Venø, S. T., Tóth, A. E., Song, P., Nielsen, M. S., Bøtker, H. E., Blagoev, B., Drasbek, K. R. & Kjems, J. (2021). Cyclic hypoxia conditioning alters the content of myoblast-derived extracellular vesicles and enhances their cell-protective functions. Biomedicines, 9(9), Artikel 1211. https://doi.org/10.3390/biomedicines9091211

Yamamoto, K., Scavenius, C., Meschis, M. M., Gremida, A. M. E., Mogensen, E. H., Thøgersen, I. B., Bonelli, S., Scilabra, S. D., Jensen, A., Santamaria, S., Ahnström, J., Bou-Gharios, G., Enghild, J. J. & Nagase, H. (2022). A top-down approach to uncover the hidden ligandome of low-density lipoprotein receptor-related protein 1 in cartilage. Matrix Biology, 112, 190-218. https://doi.org/10.1016/j.matbio.2022.08.007

Yamamoto, K., Scilabra, S. D., Bonelli, S., Jensen, A., Scavenius, C., Enghild, J. J. & Strickland, D. K. (2024). Novel insights into the multifaceted and tissue-specific roles of the endocytic receptor LRP1. The Journal of Biological Chemistry, 300(8), Artikel 107521. https://doi.org/10.1016/j.jbc.2024.107521, https://doi.org/10.1016/j.jbc.2024.107521

Xu, S., Dong, M., Liu, X., Howard, K. A., Kjems, J. & Besenbacher, F. (2007). Direct force measurements between siRNA and chitosan molecules using force spectroscopy. Biophysical Journal, 93(3), 952-9. https://doi.org/10.1529/biophysj.106.093229

Xu, W., Wang, J.-G., Jacobsen, M. F., Mura, M., Yu, M., Kelly, R. E. A., Meng, Q.-Q., Lægsgaard, E., Stensgaard, I., Linderoth, T. R., Kjems, J., Kantorovich, L. N., Gothelf, K. V. & Besenbacher, F. (2010). Supramolecular porous network formed by molecular recognition between chemically modified nucleobases guanine and cytosine. Angewandte Chemie International Edition, 49(49), 9373-7. https://doi.org/10.1002/anie.201003390

Xu, W., Tan, Q., Yu, M., Sun, Q., Kong, H., Lægsgaard, E., Stensgaard, I., Kjems, J., Wang, J., Wang, C. & Besenbacher, F. (2013). Atomic-scale structures and interactions between the guanine quartet and potassium. Chemical Communications, 49(65), 7210-7212. https://doi.org/10.1039/c3cc43302a

Xu, K., Dedic, E. & Brodersen, D. E. (2016). Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri. Proteins, 84(7), 892-899. https://doi.org/10.1002/prot.25002

Xu, H. H., Liu, S. J., Song, S. H., Wang, W. Q., Møller, I. M. & Song, S. Q. (2016). Proteome changes associated with dormancy release of Dongxiang wild rice seeds. Journal of Plant Physiology, 206, 68-86. https://doi.org/10.1016/j.jplph.2016.08.016

Xiao, H., Shiu, P. K. T., Gabryleska, M., Conn, S. J., Dey, A., Chakrabarti, K., Regouc, M., Pichler, M., Vang Ørom, U. A., Santulli, G., Nishiwada, S., Goel, A., Nagarajan, V., Timmons, L., Alahari, S. K., Laprovitera, N., Ferracin, M., Hu, P. & Jin, H. (2020). The non-coding rna journal club: Highlights on recent papers-7. Non-Coding RNA, 5(2), Artikel 40. https://doi.org/10.3390/NCRNA5020040

Wurtz, K. E., Thodberg, K., Berenjian, A., Foldager, L., Tahamtani, F. M. & Riber, A. B. (2022). Commercial layer hybrids kept under organic conditions: a comparison of range use, welfare, and egg production in two layer strains. Poultry Science, 101(9), Artikel 102005. https://doi.org/10.1016/j.psj.2022.102005

Wurtz, K. E., Tahamtani, F. M., Foldager, L., Thodberg, K. & Riber, A. B. (2023). Associations of range use with individual behaviour, clinical welfare indicators, fear response and gastrointestinal characteristics of two laying hen hybrids. Applied Animal Behaviour Science, 265, Artikel 105978. https://doi.org/10.1016/j.applanim.2023.105978

Wuerges, J., Garau, G., Geremia, S., Fedosov, S., Petersen, T. E. & Randaccio, L. (2006). Structural basis for mammalian vitamin B₁₂ transport by transcobalamin. Proceedings of the National Academy of Sciences, 103, 4386-4391.

Wuerges, J., Geremia, S., Fedosov, S. & Randaccio, L. (2007). Vitamin B₁₂ transport proteins: Crystallographic analysis of β-axial ligand substitutions in cobalamin bound to transcobalamin. IUBMB Life, 59(11), 722-729.

Wu, K., Song, W., Zhao, L., Liu, M., Yan, J., Andersen, M. Ø., Kjems, J., Gao, S. & Zhang, Y. (2013). MicroRNA functionalized microporous titanium oxide surface by lyophilization with enhanced osteogenic activity. A C S Applied Materials and Interfaces, 5(7), 2733-44. https://doi.org/10.1021/am400374c

Wu, G., Schmid, M., Rib, L., Polak, P., Meola, N., Sandelin, A. & Jensen, T. H. (2020). A Two-Layered Targeting Mechanism Underlies Nuclear RNA Sorting by the Human Exosome. Cell Reports, 30(7), 2387-2401. https://doi.org/10.1016/j.celrep.2020.01.068

Wu, M., Karadoulama, E., Lloret-Llinares, M., Rouviere, J. O., Vaagensø, C. S., Moravec, M., Li, B., Wang, J., Wu, G., Gockert, M., Pelechano, V., Jensen, T. H. & Sandelin, A. (2020). The RNA exosome shapes the expression of key protein-coding genes. Nucleic Acids Research, 48(15), 8509-8528. https://doi.org/10.1093/nar/gkaa594

Wray, N. R., Ripke, S., Mattheisen, M., Trzaskowski, M., Byrne, E. M., Abdellaoui, A., Adams, M. J., Agerbo, E., Air, T. M., Andlauer, T. M. F., Bacanu, S.-A., Bækvad-Hansen, M., Beekman, A. F. T., Bigdeli, T. B., Binder, E. B., Blackwood, D. R. H., Bryois, J., Buttenschøn, H. N., Bybjerg-Grauholm, J. ... Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2018). Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression. Nature Genetics, 50(5), 668-681. https://doi.org/10.1038/s41588-018-0090-3

Wopereis, J., Pajuelo, E., Dazzo, F. B., Jiang, Q., Gresshoff, P. M., de Bruijn, F. J., Stougaard, J. & Szczyglowski, K. (2000). Short root mutant of Lotus japonicus with a dramatically altered symbiotic phenotype. Plant. J., 23, 97-114.

Wong, J. E. M. M., Alsarraf, H. M. A. B., Kaspersen, J. D., Pedersen, J. S., Stougaard, J., Thirup, S. S. & Blaise, M. (2014). Cooperative binding of LysM domains determines the carbohydrate affinity of a bacterial endopeptidase protein. FEBS journal, 281(4), 1196-1208. https://doi.org/10.1111/febs.12698

Wong, J. E. M. M., Midtgaard, S. R., Gysel, K., Thygesen, M. B., Sørensen, K. K., Jensen, K. J., Stougaard, J., Thirup, S. & Blaise, M. (2015). An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase. Acta crystallographica Section D: Structural biology , 71(Pt 3), 592-605. https://doi.org/10.1107/S139900471402793X

Wong, A., Bryzek, D., Dobosz, E., Scavenius, C., Svoboda, P., Rapala-Kozik, M., Lesner, A., Frydrych, I., Enghild, J., Mydel, P., Pohl, J., Thompson, P. R., Potempa, J. & Koziel, J. (2018). A Novel Biological Role for Peptidyl-Arginine Deiminases: Citrullination of Cathelicidin LL-37 Controls the Immunostimulatory Potential of Cell-Free DNA. Journal of Immunology, 200(7), 2327-2340. https://doi.org/10.4049/jimmunol.1701391

Wong, J. E. M. M., Nadzieja, M., Madsen, L. H., Bücherl, C. A., Dam, S., Sandal, N. N., Couto, D., Derbyshire, P., Uldum-Berentsen, M., Schroeder, S., Schwämmle, V., Nogueira, F. C. S., Asmussen, M. H., Thirup, S., Radutoiu, S., Blaise, M., Andersen, K. R., Menke, F. L. H., Zipfel, C. & Stougaard, J. (2019). A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proceedings of the National Academy of Sciences, 116(28), 14339-14348. https://doi.org/10.1073/pnas.1815425116

Wong, J. E. M. M., Gysel, K., Birkefeldt, T. G., Vinther, M., Muszyński, A., Azadi, P., Laursen, N. S., Sullivan, J. T., Ronson, C. W., Stougaard, J. & Andersen, K. R. (2020). Structural signatures in EPR3 define a unique class of plant carbohydrate receptors. Nature Communications, 11, Artikel 3797. https://doi.org/10.1038/s41467-020-17568-9

Wong, L. W., Chong, Y. S., Lin, W., Kisiswa, L., Sim, E., Ibáñez, C. F. & Sajikumar, S. (2021). Age-related changes in hippocampal-dependent synaptic plasticity and memory mediated by p75 neurotrophin receptor. Aging Cell, 20(2), Artikel e13305. https://doi.org/10.1111/acel.13305

Wong, E. S., Zheng, D., Tan, S. Z., Bower, N. I., Garside, V., Vanwalleghem, G., Gaiti, F., Scott, E., Hogan, B. M., Kikuchi, K., McGlinn, E., Francois, M. & Degnan, B. M. (2020). Deep conservation of the enhancer regulatory code in animals. Science, 370(6517), Artikel eaax8137. https://doi.org/10.1126/science.aax8137

Wolfs, J. L., Comfurius, P., Rasmussen, J. T., Keuren, J. F., Lindhout, T., Zwaal, R. F. & Bevers, E. M. (2005). Activated scramblase and inhibited aminophospholipid translocase cause phosphatidylserine exposure in a distinct platelet fraction. Cell. Mol. Life Sci., 62, 1514-1525.

Wolf Pérez, A.-M., Sormanni, P., Andersen, J. S., Sakhnini, L. I., Rodriguez-Leon, I., Bjelke, J. R., Gajhede, A. J., De Maria, L., Otzen, D. E., Vendruscolo, M. & Lorenzen, N. (2019). In vitro and in silico assessment of the developability of a designed monoclonal antibody library. mAbs, 11(2), 388-400. https://doi.org/10.1080/19420862.2018.1556082

Wolf, G., Yang, P., Füchtbauer, A. C., Füchtbauer, E.-M., Silva, A. M., Park, C., Wu, W., Nielsen, A. L., Pedersen, F. S. & Macfarlan, T. S. (2015). The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses. Genes & Development, 29(5), 538-54. https://doi.org/10.1101/gad.252767.114

Wiuf, C., Pallesen, J., Foldager, L. & Grove, J. (2016). LandScape: a simple method to aggregate p--Values and other stochastic variables without a priori grouping. Statistical Applications in Genetics and Molecular Biology, 15(4), 349-361. https://doi.org/10.1515/sagmb-2015-0085

Wittenborn, T., Nygaard, J. V., Horsman, M. R., Vorup-Jensen, T., Kjems, J., Thim, T., Nielsen, T., Larsen, E. K. U. & Falk, E. (2009). A Novel in Vivo Angiogenesis Mouse Model. Arteriosclerosis, Thrombosis, and Vascular Biology, (7).

Wittenborn, T., Nielsen, T., Nygaard, J. V., Larsen, E. K. U., Thim, T., Rydtoft, L. M., Vorup-Jensen, T., Kjems, J., Nielsen, N. C., Horsman, M. R. & Falk, E. (2012). Ultra-High-Field DCE-MRI of Angiogenesis in a Novel Angiogenesis Mouse Model. Journal of Magnetic Resonance Imaging, 35(3), 703-710. https://doi.org/10.1002/jmri.22855

Wittenborn, T. R., Larsen, E. K. U., Nielsen, T., Rydtoft, L. M., Hansen, L., Nygaard, J. V., Vorup-Jensen, T., Kjems, J., Horsman, M. R. & Nielsen, N. C. (2014). Accumulation of nano-sized particles in a murine model of angiogenesis. Biochemical and Biophysical Research Communications, 443(2), 470-6. https://doi.org/10.1016/j.bbrc.2013.11.127

Wippel, K., Tao, K., Niu, Y., Zgadzaj, R., Kiel, N., Guan, R., Dahms, E., Zhang, P., Jensen, D. B., Logemann, E., Radutoiu, S., Schulze-Lefert, P. & Garrido-Oter, R. (2021). Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota. Nature Microbiology, 6(9), 1150-1162. https://doi.org/10.1038/s41564-021-00941-9

Winther, A.-M. L., Bublitz, M., Karlsen, J. L., Møller, J. V., Hansen, J. B., Nissen, P. & Buch-Pedersen, M. J. (2013). The sarcolipin-bound calcium pump stabilizes calcium sites exposed to the cytoplasm. Nature, 495(7440), 265-269. https://doi.org/10.1038/nature11900

Winther, K. S., Brodersen, D. E., Brown, A. K. & Gerdes, K. (2013). VapC20 of Mycobacterium tuberculosis Cleaves the Sarcin Ricin Loop of 23S rRNA. Nature Communications, 4, Artikel 2796. https://doi.org/10.1038/ncomms3796

Winters, J. F. M., Foldager, L. & Pedersen, L. J. (2023). Postweaning growth and feeding behaviour in pigs: effect of heavier hybrid and weaning intact litters in farrowing pens for loose-housed sows. Animal, 17(1), Artikel 100688. https://doi.org/10.1016/j.animal.2022.100688

Winters, J. F. M., Foldager, L., Krogh, U., Nørskov, N. & Sørensen, M. T. (2023). Impact of glyphosate residues in sow diets on neonatal piglets: tail kinks, stillborn and diarrhoea. Livestock Science, 269, Artikel 105172. https://doi.org/10.1016/j.livsci.2023.105172

Winters, J. F. M., Kobek-Kjeldager, C., Foldager, L., Tecles, F. & Pedersen, L. J. (2023). Stress responses in pigs postweaning: Effect of heavier hybrid and weaning intact litters. Applied Animal Behaviour Science, 269, Artikel 106106. https://doi.org/10.1016/j.applanim.2023.106106

Winn, V. D., Gormley, M., Paquet, A. C., Kjær-Sørensen, K., Kramer, A., Rumer, K. K., Haimov-Kochman, R., Yeh, R.-F., Overgaard, M. T., Varki, A., Oxvig, C. & Fisher, S. J. (2008). Severe preeclampsia-related changes in gene expression at the maternal-fetal interface include sialic acid-binding immunoglobulin-like lectin-6 and pappalysin-2. Endocrinology, 150(1), 452-62. https://doi.org/10.1210/en.2008-0990