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Publikationer fra instituttet

Tidsskriftsforsider lavet af forskere fra MBG

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The Autism Spectrum Disorders Working Group of the Psychiatric Genomics Consortium (2017). Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia. Autism, 8(21), Artikel 21. https://doi.org/10.1186/s13229-017-0137-9

PCAWG Transcriptome Core Group, PCAWG Transcriptome Working Group & PCAWG Consortium (2020). Genomic basis for RNA alterations in cancer. Nature, 578(7793), 129-136. https://doi.org/10.1038/s41586-020-1970-0

Zwieb, C., Nakao, Y., Nakashima, T., Takagi, H., Goda, S., Andersen, E. S., Kakuta, Y. & Kimura, M. (2011). Structural modeling of RNase P RNA of the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biochemical and Biophysical Research Communications, 414(3), 517-522. https://doi.org/10.1016/j.bbrc.2011.09.098

Zuzic, L., Stange, A. D., Bavnhøj, L., Driller, J. H., Schiøtt, B. & Pedersen, B. P. (2023). Sweet and sour transport: Simulation insights into H⁺/sugar symport in plants. Biophysical Journal, 122(3S1), 197a. https://doi.org/10.1016/j.bpj.2022.11.1201

Zuccaro, L., Tesauro, C., Cerroni, B., Ottaviani, A., Knudsen, B. R., Balasubramanian, K. & Desideri, A. (2014). Rolling circle amplification based detection of human topoisomerase I activity on magnetic beads. Analytical Biochemistry, 451, 42-44. https://doi.org/10.1016/j.ab.2014.02.003

Zuccaro, L., Tesauro, C., Kurkina, T., Fiorani, P., Ki Yu, H., Knudsen, B. R., Kern, K., Desideri, A. & Balasubramanian, K. (2015). Real-Time Label-Free Direct Electronic Monitoring of Topoisomerase Enzyme Binding Kinetics on Graphene. ACS Nano, 9(11), 11166-11176. https://doi.org/10.1021/acsnano.5b05709

Zou, L., Luo, Y., Chen, M., Wang, G., Ding, M., Petersen, C. C., Kang, R., Dagnaes-Hansen, F., Zeng, Y., Lv, N., Ma, Q., Le, D. Q. S., Besenbacher, F., Bolund, L., Jensen, T. G., Kjems, J., Pu, W. T. & Bünger, C. (2013). A simple method for deriving functional MSCs and applied for osteogenesis in 3D scaffolds. Scientific Reports, 3, Artikel 2243. https://doi.org/10.1038/srep02243

Zhukov, V., Radutoiu, S., Madsen, L. H., Rychagova, T., Ovchinnikova, E., Borisov, A., Tikhonovich, I. & Stougaard, J. (2008). The pea Sym37 receptor kinase gene controls infection-thread initiation and nodule development. Molecular plant-microbe interactions, 21(12), 1600-8. https://doi.org/10.1094/MPMI-21-12-1600

Zhukov, V. A., Borisov, A. Y., Kuznetsova, E. V., Madsen, L. H., Moffet, M. D., Ovchinnikova, E. S., Pinaev, A. G., Radutoiu, S., Rozov, S. M., Rychagova, T. S., Shtark, O. Y., Tsyganov, V. E., Voroshilova, V. A., Stougaard, J., Weeden, N. F. & Tikhonovich, I. A. (2008). GENOME SYNTENY OF PEA AND MODEL LEGUMES: FROM MUTATION THROUGH GENETIC MAPPING TO THE GENES. I FD. Dakora, SBM. Chimphango, AJ. Valentine, C. Elmerich & WE. Newton (red.), BIOLOGICAL NITROGEN FIXATION: TOWARDS POVERTY ALLEVIATION THROUGH SUSTAINABLE AGRICULTURE (s. 223-224). Springer.

Zhu, J., Zhang, Y., Ghosh, A., Cuevas, R. A., Forero, A., Dhar, J., Ibsen, M. S., Schmid-Burgk, J. L., Schmidt, T., Ganapathiraju, M. K., Fujita, T., Hartmann, R., Barik, S., Hornung, V., Coyne, C. B. & Sarkar, S. N. (2014). Antiviral activity of human OASL protein is mediated by enhancing signaling of the RIG-I RNA sensor. Immunity, 40(6), 936-948. https://doi.org/10.1016/j.immuni.2014.05.007

Zhou, J., Shi, J., Hou, J., Zang, Y., Rasmussen, J. T., Heegaard, C. W. & Gilbert, G. E. (2010). Phosphatidylserine exposure and procoagulant activity in acute promyelocytic leukemia. Journal of Thrombosis and Haemostasis, 8, 773–782.

Zhou, Z., Thomsen, R., Kahns, S., Nielsen, A. L. & Nielsen, A. L. (2010). The NSD3L histone methyltransferase regulates cell cycle and cell invasion in breast cancer cells. Biochemical and Biophysical Research Communications, 398(3), 565-570. https://doi.org/10.1016/j.bbrc.2010.06.119

Zhou, Z., Hamming, O. J., Ank, N., Paludan, S. R., Nielsen, A. L., Hartmann, R. & Nielsen, A. L. (2007). Type III interferon (IFN) induces a type I IFN-like response in a restricted subset of cells through signaling pathways involving both the Jak-STAT pathway and the mitogen-activated protein kinases. Journal of Virology, 81(14), 7749-7758. https://doi.org/10.1128/JVI.02438-06

Zhou, H., Terczynska-Dyla, E., Mohlenberg, M., Gad, H. H. & Hartmann, R. (2017). Characterization of IFNL4 promoters from different species. Cytokine, 100, 143.

Zhou, H., Møhlenberg, M., Terczyńska-Dyla, E., Winther, K. G., Hansen, N. H., Vad-Nielsen, J., Laloli, L., Dijkman, R., Nielsen, A. L., Gad, H. H. & Hartmann, R. (2020). The IFNL4 Gene Is a Noncanonical Interferon Gene with a Unique but Evolutionarily Conserved Regulation. Journal of Virology, 94(5), e01535-19. Artikel e01535-19. https://doi.org/10.1128/JVI.01535-19

Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. ... Zhang, G. (2023). Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology & Evolution, 7(7), 1114-1130. https://doi.org/10.1038/s41559-022-01974-x

Zhong, Y., Sagnelli, D., Topbjerg, H. B., Hasler-Sheetal, H., Andrzejczak, O. A., Hooshmand, K., Gislum, R., Jiang, D., Møller, I. M., Blennow, A. & Hebelstrup, K. H. (2020). Expression of starch-binding factor CBM20 in barley plastids controls the number of starch granules and the level of CO2 fixation. Journal of Experimental Botany, 71(1), 234-246. https://doi.org/10.1093/jxb/erz401

Zheng, J., Richardson, T. G., Millard, L. A. C., Hemani, G., Elsworth, B. L., Raistrick, C. A., Vilhjalmsson, B., Neale, B. M., Haycock, P. C., Smith, G. D. & Gaunt, T. R. (2018). PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics. GigaScience, 7(8), 1-10. https://doi.org/10.1093/gigascience/giy090

Zhao, Z., Andersen, S. U., Ljung, K., Dolezal, K., Miotk, A., Schultheiss, S. J. & Lohmann, J. U. (2010). Hormonal control of the shoot stem-cell niche. Nature, 465(7301), 1089-92. https://doi.org/10.1038/nature09126

Zhao, B., Xu, P., Jiang, L., Paaske, B., Kromann-Hansen, T., Jensen, J. K., Sørensen, H. P., Liu, Z., Nielsen, J. T., Christensen, A., Hosseini, M., Sørensen, K. K., Nielsen, N. C., Jensen, K. J., Huang, M. & Andreasen, P. A. (2014). A cyclic peptidic serine protease inhibitor: increasing affinity by increasing Peptide flexibility. PLOS ONE, 9(12), Artikel e115872. https://doi.org/10.1371/journal.pone.0115872

Zhang, Z., Olsen, E. M., Kryger, M., Voigt, N. V., Tørring, T., Gültekin, E., Nielsen, M., MohammadZadegan, R., Andersen, E. S., Nielsen, M. M., Kjems, J., Birkedal, V. & Gothelf, K. V. (2011). A DNA tile actuator with eleven discrete states. Angewandte Chemie International Edition, 50(17), 3983-7. https://doi.org/10.1002/anie.201007642

Zhang, S., Andreasen, M., Nielsen, J. T., Liu, L., Nielsen, E. H., Song, J., Ji, G., Sun, F., Skrydstrup, T., Besenbacher, F., Nielsen, N. C., Otzen, D. E. & Dong, M. (2013). Coexistence of ribbon and helical fibrils originating from hIAPP20-29 revealed by quantitative nanomechanical atomic force microscopy. Proceedings of the National Academy of Sciences, 110(8), 2798-2803. https://doi.org/10.1073/pnas.1209955110

Zhang, H., Wang, W.-Q., Liu, S.-J., Møller, I. M. & Song, S.-Q. (2015). Proteome Analysis of Poplar Seed Vigor. PLOS ONE, 10(7), Artikel e0132509. https://doi.org/10.1371/journal.pone.0132509

Zhang, X., Bajic, G., Andersen, G. R., Christiansen, S. H. & Vorup-Jensen, T. (2016). The cationic peptide LL-37 binds Mac-1 (CD11b/CD18) with a low dissociation rate and promotes phagocytosis. B B A - Proteins and Proteomics, 1864(5), 471-478. https://doi.org/10.1016/j.bbapap.2016.02.013

Zhang, Y.-X., Xu, H.-H., Liu, S.-J., Li, N., Wang, W.-Q., Moller, I. M. & Song, S.-Q. (2016). Proteomic Analysis Reveals Different Involvement of Embryo and Endosperm Proteins during Aging of Yliangyou 2 Hybrid Rice Seeds. Frontiers in Plant Science, 7(September), Artikel 1394. https://doi.org/10.3389/fpls.2016.01394

Zhang, M., Lykke-Andersen, S., Zhu, B., Xiao, W., Hoskins, J. W., Zhang, X., Rost, L. M., Collins, I., Bunt, M. V. D., Jia, J., Parikh, H., Zhang, T., Song, L., Jermusyk, A., Chung, C. C., Zhu, B., Zhou, W., Matters, G. L., Kurtz, R. C. ... Amundadottir, L. (2018). Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues. Gut, 67(3), 521-533. https://doi.org/10.1136/gutjnl-2016-313146

Zhang, N., Rao, R. S. P., Salvato, F., Havelund, J. F., Møller, I. M., Thelen, J. J. & Xu, D. (2018). MU-LOC: A machine-learning method for predicting mitochondrially localized proteins in plants. Frontiers in Plant Science, 9, Artikel 634. https://doi.org/10.3389/fpls.2018.00634

Zhang, Y., Bærentsen, R. L., Fuhrer, T., Sauer, U., Gerdes, K. & Brodersen, D. E. (2019). (p)ppGpp Regulates a bacterial nucleosidase by an allosteric two-domain switch. Molecular Cell, 74(6), 1239-1249.e4. https://doi.org/10.1016/j.molcel.2019.03.035

Zhang, Y., Gal, N., Itel, F., Westensee, I. N., Brodszkij, E., Mayer, D., Stenger, S., Castellote-Borrell, M., Boesen, T., Tabaei, S. R., Hook, F. & Stadler, B. (2019). Hybrid vesicles as intracellular reactive oxygen species and nitric oxide generators. Nanoscale, 11(24), 11530-11541. https://doi.org/10.1039/c9nr02584g

Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., Zhang, Z., Brazma, A., PCAWG Transcriptome Working Group, PCAWG Structural Variation Working Group, Creighton, C. J. & PCAWG Consortium (2020). High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nature Communications, 11(1), Artikel 736. https://doi.org/10.1038/s41467-019-13885-w

Zhang, B., Nandakumar, R., Reinert, L. S., Huang, J., Laustsen, A., Gao, Z., Sun, C., Jensen, S. B., Troldborg, A., Assil, S., Berthelsen, M. F., Scavenius, C., Zhang, Y., Windross, S. J., Olagnier, D., Prabakaran, T., Bodda, C., Narita, R., Cai, Y. ... Paludan, S. R. (2020). Author Correction: STEEP mediates STING ER exit and activation of signaling (Nature Immunology, (2020), 21, 8, (868-879), 10.1038/s41590-020-0730-5). Nature Immunology, 21(11), 1468-1469. https://doi.org/10.1038/s41590-020-0803-5

Zhang, J., Song, L., Pedersen, D. V., Li, A., Lambris, J. D., Andersen, G. R., Mollnes, T. E., Ma, Y. J. & Garred, P. (2020). Soluble collectin-12 mediates C3-independent docking of properdin that activates the alternative pathway of complement. eLife, 9, 1-19. Artikel e60908. https://doi.org/10.7554/eLife.60908

Zhang, Q., Privé, F., Vilhjálmsson, B. & Speed, D. (2021). Improved genetic prediction of complex traits from individual-level data or summary statistics. Nature Communications, 12(1), Artikel 4192. https://doi.org/10.1038/s41467-021-24485-y

Zhang, N., Kisiswa, L., Ramanujan, A., Li, Z., Sim, E. W., Tian, X., Yuan, W., Ibáñez, C. F. & Lin, Z. (2021). Structural basis of NF-κB signaling by the p75 neurotrophin receptor interaction with adaptor protein TRADD through their respective death domains. Journal of Biological Chemistry, 297(2), Artikel 100916. https://doi.org/10.1016/j.jbc.2021.100916

Zhang, X., Galenkamp, N. S., Heide, N. J. V. D., Valero Moreno, J., Maglia, G. & Kjems, J. (2023). Specific Detection of Proteins by a Nanobody-Functionalized Nanopore Sensor. ACS Nano, 17(10), 9167-9177. https://doi.org/10.1021/acsnano.2c12733

Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L. ... Wu, D. D. (2023). Comparative genomics reveals the hybrid origin of a macaque group. Science Advances, 9(22), Artikel eadd3580. https://doi.org/10.1126/sciadv.add3580

Zhang, Y., Plesner, T. J., Ouyang, Y., Zheng, Y.-C., Bouhier, E., Ingemann Berentzen, E., Zhang, M., Zhou, P., Zimmermann , W., Andersen, G. R. & Guo, Z. (2023). Computer-aided discovery of a novel thermophilic laccase for low-density polyethylene degradation. Journal of Hazardous Materials, 458, Artikel 131986. https://doi.org/10.1016/j.jhazmat.2023.131986

Zhang, C., Reid, K., Sands, A. F., Fraimout, A., Schierup, M. H. & Merilä, J. (2023). De Novo Mutation Rates in Sticklebacks. Molecular Biology and Evolution, 40(9), Artikel msad192. https://doi.org/10.1093/molbev/msad192

Zhang, Y., Yu, H., Wang, D., Lei, X., Meng, Y., Zhang, N., Chen, F., Lv, L., Pan, Q., Qin, H., Zhang, Z., van Aalten, D. M. F. & Yuan, K. (2023). Protein O-GlcNAcylation homeostasis regulates facultative heterochromatin to fine-tune sog-Dpp signaling during Drosophila early embryogenesis. Journal of Genetics and Genomics, 50(12), 948-959. https://doi.org/10.1016/j.jgg.2023.05.014

Zhang, L., Armour, K., Chen, J. Y., Mylona, A., Yang, M., Andersen, G. R., Maciejewki, J. P., Bakrania, P. & Lin, F. (2024). Humanization of a mouse anti-human complement C6 monoclonal antibody as a potential therapeutic for certain complement-mediated diseases. Molecular immunology, 170, 19-25. https://doi.org/10.1016/j.molimm.2024.03.010

Zhang, X., Malle, M. G., Thomsen, R. P., Sørensen, R. S., Sørensen, E. W., Hatzakis, N. S. & Kjems, J. (2024). Deconvoluting the Effect of Cell-Penetrating Peptides for Enhanced and Controlled Insertion of Large-Scale DNA Nanopores. A C S Applied Materials and Interfaces, 16(15), 18422-18433. https://doi.org/10.1021/acsami.3c18636

iPSYCH Consortium (2024). Phenotypic and ancestry-related assortative mating in autism. Molecular Autism, 15(1), 27. Artikel 27. https://doi.org/10.1186/s13229-024-00605-5

Zhang, H., Fechete, LI., Himmelbach, A., Poehlein, A., Lohwasser, U., Börner, A., Maalouf, F., Kumar, S., Khazaei, H., Stein, N. & Jayakodi, M. (2024). Optimization of Genotyping-by-Sequencing (GBS) for Germplasm Fingerprinting and Trait Mapping in Faba Bean. Legume Science, 6(3), Artikel e254. https://doi.org/10.1002/leg3.254

Zhan, B., Fadista, J., Thomsen, B., Hedegaard, J., Panitz, F. & Bendixen, C. (2011). Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping. B M C Genomics, 12(557). https://doi.org/10.1186/1471-2164-12-557

Zgadzaj, R., James, E. K., Kelly, S., Kawaharada, Y., de Jonge, N., Jensen, D. B., Madsen, L. H. & Radutoiu, S. (2015). A Legume Genetic Framework Controls Infection of Nodules by Symbiotic and Endophytic Bacteria. P L o S Genetics, 11(6), Artikel 1005280. https://doi.org/10.1371/journal.pgen.1005280

Zgadzaj, R., Garrido-Oter, R., Jensen, D. B., Koprivova, A., Schulze-Lefert, P. & Radutoiu, S. (2016). Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities. Proceedings of the National Academy of Sciences, 113(49), E7996-E8005. https://doi.org/10.1073/pnas.1616564113

Zeng, G., Vad, B. S., Dueholm, M. S., Christiansen, G., Nilsson, M., Tolker-Nielsen, T., Nielsen, P. H., Meyer, R. L. & Otzen, D. E. (2015). Functional bacterial amyloid increases Pseudomonas biofilm hydrophobicity and stiffness. Frontiers in Microbiology, 6, 1099. https://doi.org/10.3389/fmicb.2015.01099

Zelikin, A. N., Andersen, E. S. & Städler, B. (2023). Editorial for the Special Issue 'Synthetic Biology and Biomimicry'. Small, 19(13), Artikel 2301160. https://doi.org/10.1002/smll.202301160

Zechiedrich, E. L., Christiansen, K., Andersen, A. H., Westergaard, O. & Osheroff, N. (1989). Double-stranded DNA cleavage/religation reaction of eukaryotic topoisomerase II: evidence for a nicked DNA intermediate. Biochemistry, 28(15), 6229-36.

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