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Institut for Molekylærbiologi og Genetik

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Peer-review'ede publikationer ved MBG

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de Toda, I. M., Rattan, S., De la Feunte, M. & Arranz, L. (2021). Female mice reaching exceptionally high old age have preserved 20S proteasome activities. Antioxidants, 10(9), [1397]. https://doi.org/10.3390/antiox10091397

de Melo Costa, V. R., Pfeuffer, J., Louloupi, A., Ørom, U. A. V. & Piro, R. M. (2021). SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency. BMC Bioinformatics, 22(1), [368]. https://doi.org/10.1186/s12859-021-04282-6

Zhang, B. B. B., Kan, R. L. D., Woo, T. F., Chan, C. C. H., Fong, K. N. K. & Kranz, G. S. (2021). Probing the effects of single-session iTBS on associative memory: A prospective, randomized, controlled cross-over study. Brain Stimulation, 14(4), 924-926. https://doi.org/10.1016/j.brs.2021.05.017

Zarei, M., Rahimi, K., Hassanzadeh, K., Abdi, M., Hosseini, V., Fathi, A. & Kakaei, K. (2021). From the environment to the cells: An overview on pivotal factors which affect spreading and infection in COVID-19 pandemic. Environmental Research, 201, [111555]. https://doi.org/10.1016/j.envres.2021.111555

Zarantonello, A., Pedersen, H., Laursen, N. S. & Andersen, G. R. (2021). Nanobodies provide insight into the molecular mechanisms of the complement cascade and offer new therapeutic strategies. Biomolecules, 11(2), [298]. https://doi.org/10.3390/biom11020298

Zarantonello, A., Mortensen, S., Laursen, N. S. & Andersen, G. R. (2021). Purification of Human Complement Component C4 and Sample Preparation for Structural Biology Applications. I Methods in Molecular Biology (s. 249-264). Humana Press Inc. Methods in Molecular Biology Bind 2227 https://doi.org/10.1007/978-1-0716-1016-9_22

Zak, K. M., Bostock, M. J., Waligorska, I., Thøgersen, I. B., Enghild, J. J., Popowicz, G. M., Grudnik, P., Potempa, J. & Ksiazek, M. (2021). Latency, thermal stability, and identification of an inhibitory compound of mirolysin, a secretory protease of the human periodontopathogen Tannerella forsythia. Journal of Enzyme Inhibition and Medicinal Chemistry, 36(1), 1267-1281. https://doi.org/10.1080/14756366.2021.1937619

Ye, L., Schnepf, D., Ohnemus, A., Ong, L. C., Gad, H. H., Hartmann, R., Lycke, N. & Staeheli, P. (2021). Interferon-λ Improves the Efficacy of Intranasally or Rectally Administered Influenza Subunit Vaccines by a Thymic Stromal Lymphopoietin-Dependent Mechanism. Frontiers in Immunology, 12, [749325]. https://doi.org/10.3389/fimmu.2021.749325

Yan, Y., Gu, T., Christensen, S. D. K., Su, J., Lassen, T. R., Hjortbak, M. V., Lo, I., Venø, S. T., Tóth, A. E., Song, P., Nielsen, M. S., Bøtker, H. E., Blagoev, B., Drasbek, K. R. & Kjems, J. (2021). Cyclic hypoxia conditioning alters the content of myoblast-derived extracellular vesicles and enhances their cell-protective functions. Biomedicines, 9(9), [1211]. https://doi.org/10.3390/biomedicines9091211

Wippel, K., Tao, K., Niu, Y., Zgadzaj, R., Kiel, N., Guan, R., Dahms, E., Zhang, P., Jensen, D. B., Logemann, E., Radutoiu, S., Schulze-Lefert, P. & Garrido-Oter, R. (2021). Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota. Nature Microbiology, 6(9), 1150-1162. https://doi.org/10.1038/s41564-021-00941-9

Warnet, X. L., Bakke Krog, H., Sevillano-Quispe, O. G., Poulsen, H. & Kjaergaard, M. (2021). The C-terminal domains of the NMDA receptor: How intrinsically disordered tails affect signalling, plasticity and disease. European Journal of Neuroscience, 54(8), 6713-6739. https://doi.org/10.1111/ejn.14842

Wang, X., Hao, D. & Kadarmideen, H. N. (2021). GeneDMRs: An R Package for Gene-Based Differentially Methylated Regions Analysis. Journal of Computational Biology, 28(3), 304-316. https://doi.org/10.1089/cmb.2020.0081

Walther, R., Monge, P., Pedersen, A., Benderoth, A., Pedersen, J., Farzadfard, A., Mandrup, O., Howard, K., Otzen, D. & Zelikin, A. N. (2021). Per-glycosylation of the Surface-Accessible Lysines: One-Pot Aqueous Route to Stabilized Proteins with Native Activity. ChemBioChem, 22(14), 2478-2485. https://doi.org/10.1002/cbic.202100228

Vogt, S., Bobbili, M. R., Stadlmayr, G., Stadlbauer, K., Kjems, J., Rüker, F., Grillari, J. & Wozniak-Knopp, G. (2021). An engineered CD81-based combinatorial library for selecting recombinant binders to cell surface proteins: Laminin binding CD81 enhances cellular uptake of extracellular vesicles. Journal of Extracellular Vesicles, 10(11), [e12139]. https://doi.org/10.1002/jev2.12139

Vittozzi, Y., Nadzieja, M., Rogato, A., Radutoiu, S., Valkov, V. T. & Chiurazzi, M. (2021). The Lotus japonicus NPF3.1 Is a Nodule-Induced Gene That Plays a Positive Role in Nodule Functioning. Frontiers in Plant Science, 12, [688187]. https://doi.org/10.3389/fpls.2021.688187

Villar, I., Rubio, M. C., Calvo-Begueria, L., Pérez-Rontomé, C., Larrainzar, E., Wilson, M. T., Sandal, N., Mur, L. A., Wang, L., Reeder, B., Duanmu, D., Uchiumi, T., Stougaard, J. & Becana, M. (2021). Three classes of hemoglobins are required for optimal vegetative and reproductive growth of Lotus japonicus: genetic and biochemical characterization of LjGlb2-1. Journal of Experimental Botany, 72(22), 7778–7791. https://doi.org/10.1093/jxb/erab376

Vanwalleghem, G., Constantin, L. & Scott, E. K. (2021). Calcium Imaging and the Curse of Negativity. Frontiers in Neural Circuits, 14, [607391]. https://doi.org/10.3389/fncir.2020.607391

Valero, J., Civit, L., Dupont, D. M., Selnihhin, D., Reinert, L. S., Idorn, M., Israels, B. A., Bednarz, A. M., Bus, C., Asbach, B., Peterhoff, D., Pedersen, F. S., Birkedal, V., Wagner, R., Paludan, S. R. & Kjems, J. (2021). A serum-stable RNA aptamer specific for SARS-CoV-2 neutralizes viral entry. Proceedings of the National Academy of Sciences of the United States of America, 118(50), [e2112942118]. https://doi.org/10.1073/pnas.2112942118

Turtola, M., Manav, C. M., Kumar, A., Tudek, A., Mroczek, S., Krawczyk, P. S., Dziembowski, A., Schmid, M., Passmore, L. A., Casanal, A. & Jensen, T. H. (2021). Three-layered control of mRNA poly(A) tail synthesis in Saccharomyces cerevisiae. Genes and Development, 35(17-18), 1290-1303. https://doi.org/10.1101/GAD.348634.121

Tudek, A., Krawczyk, P. S., Mroczek, S., Tomecki, R., Turtola, M., Matylla-Kulińska, K., Jensen, T. H. & Dziembowski, A. (2021). Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae. Nature Communications, 12, [4951]. https://doi.org/10.1038/s41467-021-25251-w

Tsochatzis, E., Berggreen, I. E., Tedeschi, F., Ntrallou, K., Gika, H. & Corredig, M. (2021). Gut microbiome and degradation product formation during biodegradation of expanded polystyrene by mealworm larvae under different feeding strategies. Molecules, 26(24), [7568]. https://doi.org/10.3390/molecules26247568

Timcenko, M., Dieudonné, T., Montigny, C., Boesen, T., Lyons, J. A., Lenoir, G. & Nissen, P. (2021). Structural Basis of Substrate-Independent Phosphorylation in a P4-ATPase Lipid Flippase. Journal of Molecular Biology, 433(16), [167062]. https://doi.org/10.1016/j.jmb.2021.167062

Taschner, M., Basquin, J., Steigenberger, B., Schäfer, I. B., Soh, Y. M., Basquin, C., Lorentzen, E., Räschle, M., Scheltema, R. A. & Gruber, S. (2021). Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding. EMBO Journal, 40(15), [e107807]. https://doi.org/10.15252/embj.2021107807

Tanu, T., Taniue, K., Imamura, K., Onoguchi-Mizutani, R., Han, H., Jensen, T. H. & Akimitsu, N. (2021). hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression. RNA Biology, 18(sup1), 537-547. https://doi.org/10.1080/15476286.2021.1971439

Talotta, R., Bahrami, S. & Laska, M. J. (2021). POS0349 SEQUENCE COMPLEMENTARITY BETWEEN SARS-CoV-2 GENOME AND HUMAN NONCODING RNAS ASSOCIATED WITH IMMUNOLOGICAL DISORDERS: AN IN SILICO PIVOTAL STUDY. Annals of the Rheumatic Diseases, 80, 404-405.

Sweet, M. E., Larsen, C., Zhang, X., Schlame, M., Pedersen, B. P. & Stokes, D. L. (2021). Structural basis for potassium transport in prokaryotes by KdpFABC. Proceedings of the National Academy of Sciences of the United States of America, 118(29), [e2105195118]. https://doi.org/10.1073/pnas.2105195118

Støy, S., Terczynska-Dyla, E., Veidal, S. S., Rigbolt, K., Vilstrup, H., Grønbaek, H., Hartmann, R. & Sandahl, T. D. (2021). Interferon lambda 4 genotype and pathway in alcoholic hepatitis. Scandinavian Journal of Gastroenterology, 56(3), 304-311. https://doi.org/10.1080/00365521.2021.1874046

Stagsted, L. V. W., O'Leary, E. T., Ebbesen, K. K. & Hansen, T. B. (2021). The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals. eLife, 10, [e63088]. https://doi.org/10.7554/eLife.63088

Silberberg, J. M., Corey, R. A., Hielkema, L., Stock, C., Stansfeld, P. J., Paulino, C. & Hänelt, I. (2021). Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC. Nature Communications, 12(1), [5098]. https://doi.org/10.1038/s41467-021-25242-x

Shrestha, A., Zhong, S., Therrien, J., Huebert, T., Sato, S., Mun, T., Andersen, S. U., Stougaard, J., Lepage, A., Niebel, A., Ross, L. & Szczyglowski, K. (2021). Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling. New Phytologist, 229(3), 1535-1552. https://doi.org/10.1111/nph.16950

Shemesh, M., Aktepe, T. E., Deerain, J. M., McAuley, J. L., Audsley, M. D., David, C. T., Purcell, D. F. J., Urin, V., Hartmann, R., Moseley, G. W., Mackenzie, J. M., Schreiber, G. & Harari, D. (2021). SARS-CoV-2 suppresses IFNβ production mediated by NSP1, 5, 6, 15, ORF6 and ORF7b but does not suppress the effects of added interferon. PLOS Pathogens, 17(8), [e1009800]. https://doi.org/10.1371/journal.ppat.1009800

Shahsavar, A., Stohler, P., Bourenkov, G., Zimmermann, I., Siegrist, M., Guba, W., Pinard, E., Sinning, S., Seeger, M. A., Schneider, T. R., Dawson, R. J. P. & Nissen, P. (2021). Structural insights into the inhibition of glycine reuptake. Nature, 591, 677-681. https://doi.org/10.1038/s41586-021-03274-z

Serpell, L. C., Radford, S. E. & Otzen, D. (2021). AlphaFold: A Special Issue and a Special time for Protein Science. Journal of Molecular Biology, 433(20), [167231]. https://doi.org/10.1016/j.jmb.2021.167231

Selas, A., Fuertes, M., Melcón-Fernández, E., Pérez-Pertejo, Y., Reguera, R. M., Balaña-Fouce, R., Knudsen, B. R., Palacios, F. & Alonso, C. (2021). Hybrid quinolinyl phosphonates as heterocyclic carboxylate isosteres: Synthesis and biological evaluation against topoisomerase 1B (TOP1B). Pharmaceuticals, 14(8), [784]. https://doi.org/10.3390/ph14080784

Sekmen Cetinel, A. H., Yalcinkaya, T., Akyol, T. Y., Gokce, A. & Turkan, I. (2021). Pretreatment of seeds with hydrogen peroxide improves deep-sowing tolerance of wheat seedlings. Plant Physiology and Biochemistry, 167, 321-336. https://doi.org/10.1016/j.plaphy.2021.08.016

Schnepf, D., Crotta, S., Thamamongood, T., Stanifer, M., Polcik, L., Ohnemus, A., Vier, J., Jakob, C., Llorian, M., Gad, H. H., Hartmann, R., Strobl, B., Kirschnek, S., Boulant, S., Schwemmle, M., Wack, A. & Staeheli, P. (2021). Selective Janus kinase inhibition preserves interferon-λ-mediated antiviral responses. Science Immunology, 6(59), [eabd5318]. https://doi.org/10.1126/sciimmunol.abd5318

Schmüser, L., Trefz, M., Roeters, S. J., Beckner, W., Pfaendtner, J., Otzen, D., Woutersen, S., Bonn, M., Schneider, D. & Weidner, T. (2021). Membrane Structure of Aquaporin Observed with Combined Experimental and Theoretical Sum Frequency Generation Spectroscopy. Langmuir : the ACS journal of surfaces and colloids, 37(45), 13452-13459. https://doi.org/10.1021/acs.langmuir.1c02206

Rogato, A., Valkov, V. T., Nadzieja, M., Stougaard, J. & Chiurazzi, M. (2021). The lotus japonicus AFB6 gene is involved in the auxin dependent root developmental program. International Journal of Molecular Sciences, 22(16), [8495]. https://doi.org/10.3390/ijms22168495

Roeters, S. J., Golbek, T. W., Bregnhøj, M., Drace, T., Alamdari, S., Roseboom, W., Kramer, G., Šantl-Temkiv, T., Finster, K., Pfaendtner, J., Woutersen, S., Boesen, T. & Weidner, T. (2021). Ice-nucleating proteins are activated by low temperatures to control the structure of interfacial water. Nature Communications, 12(1), [1183]. https://doi.org/10.1038/s41467-021-21349-3

Rice, A. M., Castillo Morales, A., Ho, A. T., Mordstein, C., Mühlhausen, S., Watson, S., Cano, L., Young, B., Kudla, G. & Hurst, L. D. (2021). Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design. Molecular Biology and Evolution, 38(1), 67-83. https://doi.org/10.1093/molbev/msaa188

Reginald, S. S., Etzerodt, M., Fapyane, D. & Chang, I. S. (2021). Functional Expression of a Mo-Cu-Dependent Carbon Monoxide Dehydrogenase (CODH) and Its Use as a Dissolved CO Bio-microsensor. ACS Sensors, 6(7), 2772–2782. https://doi.org/10.1021/acssensors.1c01243

Rattan, S. & Kaur, G. (red.) (2021). Nutrition, Food and Diet in Ageing and Longevity. Springer. Healthy Ageing and Longevity Bind 14 https://doi.org/ISBN 978-3-030-83017-5

Rattan, S. (2021). Nutritional hormetins in ageing and longevity. I S. Rattan & G. Kaur (red.), Nutrition, Food and Diet in Ageing and Longevity (s. 109-122). Springer. Healthy Ageing and Longevity Bind 14 https://doi.org/10.1007/978-3-030-83017-5_6

Rattan, S. & Kaur, G. (2021). Nutrition, food and diet: recapitulation, conclusions and suggestions. I S. Rattan & G. Kaur (red.), Nutrition, food and diet in ageing and longevity (s. 633-640). Springer. Healthy Ageing and Longevity Bind 14 https://doi.org/10.1007/978-3-030-83017-5_30

Rasmussen, H. Ø., Otzen, D. E. & Pedersen, J. S. (2021). A multimethod approach for analyzing FapC fibrillation and determining mass per length. Biophysical Journal, 120(11), 2262-2275. https://doi.org/10.1016/j.bpj.2021.03.031

LifeTime Community Working Groups (2021). Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine (Nature, (2020), 587, 7834, (377-386), 10.1038/s41586-020-2715-9). Nature, 592(7852), E8. https://doi.org/10.1038/s41586-021-03287-8

Rahimi Aqdam, S., Otzen, D. E., Mahmoodi, N. M. & Morshedi, D. (2021). Adsorption of azo dyes by a novel bio-nanocomposite based on whey protein nanofibrils and nano-clay: Equilibrium isotherm and kinetic modeling. Journal of Colloid and Interface Science, 602, 490-503. https://doi.org/10.1016/j.jcis.2021.05.174

Rahimi, K., Füchtbauer, A. C., Fathi, F., Mowla, S. J. & Füchtbauer, E. M. (2021). Expression of the miR-302/367 microRNA cluster is regulated by a conserved long non-coding host-gene. Scientific Reports, 11, [11115]. https://doi.org/10.1038/s41598-021-89080-z

Rahimi, K., Venø, M. T., Dupont, D. M. & Kjems, J. (2021). Nanopore sequencing of brain-derived full-length circRNAs reveals circRNA-specific exon usage, intron retention and microexons. Nature Communications, 12, [4825]. https://doi.org/10.1038/s41467-021-24975-z

Rahimi, K., Færch Nielsen, A., Venø, M. T. & Kjems, J. (2021). Nanopore long-read sequencing of circRNAs. Methods, 196, 23-29. https://doi.org/10.1016/j.ymeth.2021.09.010

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Revideret 18.01.2022 -

Lisbeth Heilesen